High Temperature Triggers Differential Expression of JUMONJI C (JmjC) Domain-Containing Histone Demethylase Genes in Leaf and Stolon Tissues of Potato (Solanum tuberosum L.) Genotypes

[1]  H. Nayyar,et al.  Genome wide identification and expression profiling of Early responsive to dehydration 6 (ERD6)-like gene family in chickpea (Cicer arietinum L.) , 2023, Plant Gene.

[2]  G. Zinta,et al.  Genome editing advancements in potato (Solanum tuberosum L.): operational challenges and solutions , 2022, Journal of Plant Biochemistry and Biotechnology.

[3]  H. Saikia,et al.  Genome-Wide Identification of Histone Modification (HM) Gene Family and Their Expression Patterns Under Abiotic Stress and Different Developmental Stages of Tea (Camellia assamica) , 2022, Journal of Plant Growth Regulation.

[4]  Caixia Liu,et al.  Genome-wide identification of the jumonji C domain- containing histone demethylase gene family in wheat and their expression analysis under drought stress , 2022, Frontiers in Plant Science.

[5]  Vijay Gahlaut,et al.  The interplay of DNA methyltransferases and demethylases with tuberization genes in potato (Solanum tuberosum L.) genotypes under high temperature , 2022, Frontiers in Plant Science.

[6]  Shengdi Yang,et al.  Genome-wide identification and expression analysis of JmjC domain–containing genes in grape under MTA treatment , 2022, Functional & Integrative Genomics.

[7]  Shiqing Ma,et al.  Evolutionary History and Functional Diversification of the JmjC Domain-Containing Histone Demethylase Gene Family in Plants , 2022, Plants.

[8]  I. Bäurle,et al.  Inducible epigenome editing probes for the role of histone H3K4 methylation in Arabidopsis heat stress memory , 2022, Plant physiology.

[9]  M. Davis,et al.  ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program , 2022, Frontiers in Bioinformatics.

[10]  Yanlong Dong,et al.  Overexpression of histone demethylase gene SlJMJ524 from tomato confers Cd tolerance by regulating metal transport-related protein genes and flavonoid content in Arabidopsis. , 2022, Plant science : an international journal of experimental plant biology.

[11]  L. Lopez,et al.  Genome-Wide Identification of Histone Modification Gene Families in the Model Legume Medicago truncatula and Their Expression Analysis in Nodules , 2022, Plants.

[12]  Changning Liu,et al.  Genome-wide identification, classification and expression analysis of the JmjC domain-containing histone demethylase gene family in Jatropha curcas L. , 2021, Scientific Reports.

[13]  A. Banerjee,et al.  Development of aerial and belowground tubers in potato is governed by photoperiod and epigenetic mechanism. , 2021, Plant physiology.

[14]  G. Deng,et al.  Identification of HvLRX, a new dehydration and light responsive gene in Tibetan hulless barley (Hordeum vulgare var. nudum) , 2021, Genes & Genomics.

[15]  Jun Liu,et al.  DNA methylation affects photoperiodic tuberization in potato (Solanum tuberosum L.) by mediating the expression of genes related to the photoperiod and GA pathways , 2021, Horticulture Research.

[16]  Nobutoshi Yamaguchi,et al.  Expression profiling of H3K27me3 demethylase genes during plant development and in response to environmental stress in Arabidopsis , 2021, Plant Signalling & Behavior.

[17]  Yuan Li,et al.  JMJ27-mediated histone H3K9 demethylation positively regulates drought-stress responses in Arabidopsis. , 2021, The New phytologist.

[18]  Nobutoshi Yamaguchi Removal of H3K27me3 by JMJ Proteins Controls Plant Development and Environmental Responses in Arabidopsis , 2021, Frontiers in Plant Science.

[19]  Qingwen Shen,et al.  Dynamics of H3K27me3 Modification on Plant Adaptation to Environmental Cues , 2021, Plants.

[20]  Y. Ruan,et al.  Systematic analysis of JmjC gene family and stress-response expression of KDM5 subfamily genes in Brassica napus , 2021, PeerJ.

[21]  Xiaofeng Cao,et al.  Histone methylation in epigenetic regulation and temperature responses. , 2021, Current opinion in plant biology.

[22]  O. Distl,et al.  De novo ZIC2 frameshift variant associated with frontonasal dysplasia in a Limousin calf , 2021, BMC Genomics.

[23]  S. Fan,et al.  Genome-wide analysis of JMJ-C histone demethylase family involved in salt-tolerance in Gossypium hirsutum L. , 2020, Plant physiology and biochemistry : PPB.

[24]  Wei Liu,et al.  Characterization and Stress Response of the JmjC Domain-Containing Histone Demethylase Gene Family in the Allotetraploid Cotton Species Gossypium hirsutum , 2020, Plants.

[25]  A. Banerjee,et al.  StE(z)2, a Polycomb group methyltransferase and deposition of H3K27me3 and H3K4me3 regulate the expression of tuberization genes in potato. , 2020, Journal of experimental botany.

[26]  Keqiang Wu,et al.  Arabidopsis JMJ29 is involved in trichome development by regulating the core trichome initiation gene GLABRA3. , 2020, The Plant journal : for cell and molecular biology.

[27]  Xuncheng Liu,et al.  Histone demethylase SlJMJ6 promotes fruit ripening by removing H3K27 methylation of ripening-related genes in tomato. , 2020, The New phytologist.

[28]  Jinyi Liu,et al.  Genome-wide identification and functional analysis of JmjC domain-containing genes in flower development of Rosa chinensis , 2020, Plant Molecular Biology.

[29]  C. Hardtke,et al.  Conditional effects of the epigenetic regulator JUMONJI 14 in Arabidopsis root growth , 2019, Development.

[30]  Dan Li,et al.  JMJ14 encoded H3K4 demethylase modulates immune responses by regulating defense gene expression and pipecolic acid levels. , 2019, The New phytologist.

[31]  S. Kaul,et al.  Identification and in silico characterization of cis-acting elements of genes involved in carotenoid biosynthesis in tomato , 2019, 3 Biotech.

[32]  Yexiong Qian,et al.  Genome-wide identification, classification and expression analysis of the JmjC domain-containing histone demethylase gene family in maize , 2019, BMC Genomics.

[33]  Jiamu Du,et al.  The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor , 2019, Nature Communications.

[34]  A. Saidi,et al.  Characterization of cis-elements in hormonal stress-responsive genes in Oryza sativa , 2019, Asia Pacific Journal of Molecular Biology and Biotechnology.

[35]  Qian Zhang,et al.  OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress. , 2018, Plant physiology and biochemistry : PPB.

[36]  Longbiao Guo,et al.  Sensing of Abiotic Stress and Ionic Stress Responses in Plants , 2018, International journal of molecular sciences.

[37]  Dong Zhang,et al.  Identification and characterization of histone modification gene family reveal their critical responses to flower induction in apple , 2018, BMC Plant Biology.

[38]  Bernadetta Rina Hastilestari,et al.  Deciphering source and sink responses of potato plants (Solanum tuberosum L.) to elevated temperatures. , 2018, Plant, cell & environment.

[39]  P. Seo,et al.  JMJ30‐mediated demethylation of H3K9me3 drives tissue identity changes to promote callus formation in Arabidopsis , 2018, The Plant journal : for cell and molecular biology.

[40]  Jian‐Kang Zhu,et al.  UTR-Dependent Control of Gene Expression in Plants. , 2017, Trends in plant science.

[41]  Xuncheng Liu,et al.  Genome-Wide Identification of Histone Modifiers and Their Expression Patterns during Fruit Abscission in Litchi , 2017, Front. Plant Sci..

[42]  S. Dutt,et al.  Key players associated with tuberization in potato: potential candidates for genetic engineering , 2017, Critical reviews in biotechnology.

[43]  Lei Wang,et al.  Genome-Wide Analysis of Soybean JmjC Domain-Containing Proteins Suggests Evolutionary Conservation Following Whole-Genome Duplication , 2016, Front. Plant Sci..

[44]  Dengcai Liu,et al.  Cold-dependent alternative splicing of a Jumonji C domain-containing gene MtJMJC5 in Medicago truncatula. , 2016, Biochemical and biophysical research communications.

[45]  Tingting Gu,et al.  Identification and characterization of histone lysine methylation modifiers in Fragaria vesca , 2016, Scientific Reports.

[46]  Sudhir Kumar,et al.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.

[47]  S. Wan,et al.  Genome-Wide Identification and Comparative Analysis of Cytosine-5 DNA Methyltransferase and Demethylase Families in Wild and Cultivated Peanut , 2016, Front. Plant Sci..

[48]  Qiang Xu,et al.  Genome-wide identification of sweet orange (Citrus sinensis) histone modification gene families and their expression analysis during the fruit development and fruit-blue mold infection process , 2015, Front. Plant Sci..

[49]  Hong Ma,et al.  Expansion and Functional Divergence of Jumonji C-Containing Histone Demethylases: Significance of Duplications in Ancestral Angiosperms and Vertebrates1[OPEN] , 2015, Plant Physiology.

[50]  S. Jacobsen,et al.  C-terminal domains of histone demethylase JMJ14 interact with a pair of NAC transcription factors to mediate specific chromatin association , 2015, Cell Discovery.

[51]  Sang-Hun Bae,et al.  Functional Analysis of the Molecular Interactions of TATA Box-Containing Genes and Essential Genes , 2015, PloS one.

[52]  Bo Hu,et al.  GSDS 2.0: an upgraded gene feature visualization server , 2014, Bioinform..

[53]  Toshiro Ito,et al.  Jumonji demethylases moderate precocious flowering at elevated temperature via regulation of FLC in Arabidopsis , 2014, Nature Communications.

[54]  Lisha Shen,et al.  A MYB-domain protein EFM mediates flowering responses to environmental cues in Arabidopsis. , 2014, Developmental cell.

[55]  Daoxiu Zhou,et al.  Over-expression of histone H3K4 demethylase gene JMJ15 enhances salt tolerance in Arabidopsis , 2014, Front. Plant Sci..

[56]  Jenn-Kang Hwang,et al.  CELLO2GO: A Web Server for Protein subCELlular LOcalization Prediction with Functional Gene Ontology Annotation , 2014, PloS one.

[57]  Xuncheng Liu,et al.  Histone Lysine Demethylases and Their Functions in Plants , 2014, Plant Molecular Biology Reporter.

[58]  C. Buell,et al.  Spud DB: A Resource for Mining Sequences, Genotypes, and Phenotypes to Accelerate Potato Breeding , 2014 .

[59]  J. Finer,et al.  Identification and validation of promoters and cis-acting regulatory elements. , 2014, Plant science : an international journal of experimental plant biology.

[60]  Xiaoyun Liu,et al.  Jumonji C Domain Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice[C][W] , 2013, Plant Cell.

[61]  D. Patel,et al.  Readout of epigenetic modifications. , 2013, Annual review of biochemistry.

[62]  Yang Shi,et al.  Emerging roles for chromatin as a signal integration and storage platform , 2013, Nature Reviews Molecular Cell Biology.

[63]  R. Aiese Cigliano,et al.  Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles , 2013, BMC Genomics.

[64]  Vassilios Ioannidis,et al.  ExPASy: SIB bioinformatics resource portal , 2012, Nucleic Acids Res..

[65]  P. Wittkopp,et al.  Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence , 2011, Nature Reviews Genetics.

[66]  Xiaofeng Cao,et al.  Characterization of the PRMT Gene Family in Rice Reveals Conservation of Arginine Methylation , 2011, PloS one.

[67]  X. Zhang,et al.  DNA Methylation and Histone Modifications Regulate De Novo Shoot Regeneration in Arabidopsis by Modulating WUSCHEL Expression and Auxin Signaling , 2011, PLoS genetics.

[68]  David M. A. Martin,et al.  Genome sequence and analysis of the tuber crop potato , 2011, Nature.

[69]  Michael F. Covington,et al.  Jumonji domain protein JMJD5 functions in both the plant and human circadian systems , 2010, Proceedings of the National Academy of Sciences.

[70]  Xiaofeng Cao,et al.  JMJ14 is an H3K4 demethylase regulating flowering time in Arabidopsis , 2010, Cell Research.

[71]  G. Crabtree,et al.  Chromatin remodelling during development , 2010, Nature.

[72]  R. Amasino,et al.  A Single Amino Acid Change in the Enhancer of Zeste Ortholog CURLY LEAF Results in Vernalization-Independent, Rapid Flowering in Arabidopsis1[C][W][OA] , 2009, Plant Physiology.

[73]  Jian-Kang Zhu,et al.  Epigenetic regulation of stress responses in plants. , 2009, Current opinion in plant biology.

[74]  Yu Xue,et al.  DOG 1.0: illustrator of protein domain structures , 2009, Cell Research.

[75]  Daoxiu Zhou,et al.  Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development , 2008, Proceedings of the National Academy of Sciences.

[76]  Guanglin Li,et al.  Comparative analysis of JmjC domain-containing proteins reveals the potential histone demethylases in Arabidopsis and rice. , 2008, Journal of integrative plant biology.

[77]  Thomas D. Schmittgen,et al.  Analyzing real-time PCR data by the comparative CT method , 2008, Nature Protocols.

[78]  Lei Li,et al.  Modulation of brassinosteroid-regulated gene expression by jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis , 2008, Proceedings of the National Academy of Sciences.

[79]  S. Berger The complex language of chromatin regulation during transcription , 2007, Nature.

[80]  C. Qian,et al.  SET domain protein lysine methyltransferases: Structure, specificity and catalysis , 2006, Cellular and Molecular Life Sciences CMLS.

[81]  H. Erdjument-Bromage,et al.  Histone demethylation by a family of JmjC domain-containing proteins , 2006, Nature.

[82]  A. Samach,et al.  Ambient temperature perception in plants. , 2005, Current opinion in plant biology.

[83]  Q. Ngo,et al.  Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis , 2005, Development.

[84]  Yang Shi,et al.  Histone Demethylation Mediated by the Nuclear Amine Oxidase Homolog LSD1 , 2004, Cell.

[85]  X. Duan,et al.  Histone demethylase MaJMJ15 is involved in the regulation of postharvest banana fruit ripening. , 2023, Food chemistry.

[86]  Kathleen Marchal,et al.  PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences , 2002, Nucleic Acids Res..

[87]  Peer Bork,et al.  SMART: a web-based tool for the study of genetically mobile domains , 2000, Nucleic Acids Res..