Diatom diversity through HTS-metabarcoding in coastal European seas

[1]  D. Vaulot,et al.  Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of the 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta , 2018, Environmental microbiology.

[2]  X. Pochon,et al.  A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations. , 2018, Marine pollution bulletin.

[3]  S. Jacquet,et al.  Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment , 2018, Hydrobiologia.

[4]  Anastasija Zaiko,et al.  Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications , 2017, PloS one.

[5]  F. Rimet,et al.  Assessing ecological status with diatoms DNA metabarcoding: Scaling-up on a WFD monitoring network (Mayotte island, France) , 2017 .

[6]  A. Godhe,et al.  The role of intraspecific variation in the ecological and evolutionary success of diatoms in changing environments , 2017, Philosophical Transactions of the Royal Society B: Biological Sciences.

[7]  C. Lange,et al.  Diatom Resting Stages in Surface Sediments: A Pilot Study Comparing Next Generation Sequencing and Serial Dilution Cultures , 2017, Cryptogamie, Algologie.

[8]  J. Poulain,et al.  Biogeography and diversity of Collodaria (Radiolaria) in the global ocean , 2017, The ISME Journal.

[9]  M. Úriz,et al.  Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA , 2016, PeerJ.

[10]  P. Wincker,et al.  Extreme Diversity of Diplonemid Eukaryotes in the Ocean , 2016, Current Biology.

[11]  Ben Nichols,et al.  VSEARCH: a versatile open source tool for metagenomics , 2016, PeerJ.

[12]  J. Claverie,et al.  Benthic protists: the under-charted majority. , 2016, FEMS microbiology ecology.

[13]  S. Passy,et al.  Global patterns and drivers of species and trait composition in diatoms , 2016 .

[14]  Philippe Esling,et al.  Benthic monitoring of salmon farms in Norway using foraminiferal metabarcoding , 2016 .

[15]  Stéphane Audic,et al.  Insights into global diatom distribution and diversity in the world’s ocean , 2016, Proceedings of the National Academy of Sciences.

[16]  A. Kappler,et al.  Ribosomal Tag Pyrosequencing of DNA and RNA Reveals “Rare” Taxa with High Protein Synthesis Potential in the Sediment of a Hypersaline Lake in Western Australia , 2016 .

[17]  B. Beszteri,et al.  rRNA and rDNA based assessment of sea ice protist biodiversity from the central Arctic Ocean , 2016 .

[18]  L. Medlin Evolution of the diatoms: major steps in their evolution and a review of the supporting molecular and morphological evidence , 2016 .

[19]  J. Claverie,et al.  Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing. , 2015, Environmental microbiology.

[20]  Philippe Esling,et al.  High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems , 2015, Scientific Reports.

[21]  Rachelle M. Jensen,et al.  The ocean sampling day consortium , 2015, GigaScience.

[22]  P. Bork,et al.  Eukaryotic plankton diversity in the sunlit ocean , 2015, Science.

[23]  Gernot Glöckner,et al.  Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies , 2015, Molecular ecology resources.

[24]  R. Sandaa,et al.  Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing , 2015, Molecular ecology.

[25]  D. Sarno,et al.  Diversity and temporal pattern of Pseudo-nitzschia species (Bacillariophyceae) through the molecular lens , 2015 .

[26]  S. O’Brien,et al.  SmileFinder: a resampling-based approach to evaluate signatures of selection from genome-wide sets of matching allele frequency data in two or more diploid populations , 2015, GigaScience.

[27]  Adriana Zingone,et al.  Assessment of Species Diversity and Distribution of an Ancient Diatom Lineage Using a DNA Metabarcoding Approach , 2014, PloS one.

[28]  Tim Urich,et al.  Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams. , 2014, Environmental microbiology.

[29]  E. Theriot,et al.  Comparative analysis of the interaction between habitat and growth form in diatoms , 2014, The ISME Journal.

[30]  Jean-Michel Claverie,et al.  Patterns of Rare and Abundant Marine Microbial Eukaryotes , 2014, Current Biology.

[31]  Renzo Kottmann,et al.  The founding charter of the Genomic Observatories Network , 2014, GigaScience.

[32]  J. Ehrman,et al.  Cryptic diversity in a cosmopolitan diatom known as Asterionellopsis glacialis (Fragilariaceae): Implications for ecology, biogeography, and taxonomy. , 2014, American journal of botany.

[33]  Alexandros Stamatakis,et al.  Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context. , 2014, Molecular biology and evolution.

[34]  A. Zingone,et al.  A reappraisal of the genus Leptocylindrus (Bacillariophyta), with the addition of three species and the erection of Tenuicylindrus gen. nov , 2013, Journal of phycology.

[35]  S. Audic,et al.  454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes , 2013, PloS one.

[36]  M. Firestone,et al.  Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses , 2013, The ISME Journal.

[37]  D. Sarno,et al.  Diversity and germination patterns of diatom resting stages at a coastal Mediterranean site , 2013 .

[38]  S. Dittami,et al.  Seasonal dynamics of harmful algae in outer Oslofjorden monitored by microarray, qPCR, and microscopy , 2013, Environmental Science and Pollution Research.

[39]  D. Kirchman,et al.  Activity of abundant and rare bacteria in a coastal ocean , 2011, Proceedings of the National Academy of Sciences.

[40]  R. Jansen,et al.  A preliminary multi gene phylogeny of the diatoms (Bacillariophyta): Challenges for future research , 2010 .

[41]  Y. Pazos,et al.  Biocoenosis and thanatocoenosis of diatoms in a western Galician ría. , 2010 .

[42]  M. Degerlund,et al.  Main Species Characteristics of Phytoplankton Spring Blooms in NE Atlantic and Arctic Waters (68–80° N) , 2010 .

[43]  L. Dubroca,et al.  The time for sex: A biennial life cycle in a marine planktonic diatom , 2010 .

[44]  Martin Hartmann,et al.  Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities , 2009, Applied and Environmental Microbiology.

[45]  E. Virginia Armbrust,et al.  The life of diatoms in the world's oceans , 2009, Nature.

[46]  A. Dell'Anno,et al.  Damage and degradation rates of extracellular DNA in marine sediments: implications for the preservation of gene sequences , 2008, Molecular ecology.

[47]  D. Sarno,et al.  DIVERSITY IN THE GENUS SKELETONEMA (BACILLARIOPHYCEAE). II. AN ASSESSMENT OF THE TAXONOMY OF S. COSTATUM‐LIKE SPECIES WITH THE DESCRIPTION OF FOUR NEW SPECIES 1 , 2005 .

[48]  Olga Mangoni,et al.  Seasonal patterns in plankton communities in a pluriannual time series at a coastal Mediterranean site (Gulf of Naples): an attempt to discern recurrences and trends , 2004 .

[49]  G. Hasle,et al.  A STUDY OF THE PSEUDO‐NITZSCHIA PSEUDODELICATISSIMA/CUSPIDATA COMPLEX (BACILLARIOPHYCEAE): WHAT IS P. PSEUDODELICATISSIMA? 1 , 2003 .

[50]  David G. Mann,et al.  The species concept in diatoms , 1999 .

[51]  P. Hargraves Identifying Marine Phytoplankton , 1998 .

[52]  C. Lange,et al.  Seasonal cycle of diatoms in the Skagerrak, North Atlantic, with emphasis on the period 1980–1990 , 1992 .

[53]  David G. Mann,et al.  Diatoms: Biology and Morphology of the Genera , 1990 .

[54]  P. Hargraves,et al.  SPORE FORMATION IN THE LIFE CYCLES OF THE DIATOMS CHAETOCEROS DIADEMA AND LEPTOCYLINDRUS DANICUS 1 , 1985 .

[55]  G. Pesole,et al.  Diversity and temporal patterns of planktonic protist assemblages at a Mediterranean Long Term Ecological Research site , 2017, FEMS microbiology ecology.

[56]  O. Clerck,et al.  Matching names and clades in the brown algal genus Lobophora (Dictyotales, Phaeophyceae) : an effort to integrate type specimens in modern taxonomy , 2015 .

[57]  C. Cusack,et al.  Microscopic and molecular methods for quantitative phytoplankton analysis , 2010 .

[58]  J. Walters Challenges for future research , 2010 .

[59]  D. Mann,et al.  The origin and evolution of the diatoms: their adaptation to a planktonic existence , 2007 .

[60]  Paul G. Falkowski,et al.  Evolution of primary producers in the sea , 2007 .