Meat Species Identification using Loop-mediated Isothermal Amplification Assay Targeting Species-specific Mitochondrial DNA

Meat source fraud and adulteration scandals have led to consumer demands for accurate meat identification methods. Nucleotide amplification assays have been proposed as an alternative method to protein-based assays for meat identification. In this study, we designed Loop-mediated isothermal amplification (LAMP) assays targeting species-specific mitochondrial DNA to identify and discriminate eight meat species; cattle, pig, horse, goat, sheep, chicken, duck, and turkey. The LAMP primer sets were designed and the target genes were discriminated according to their unique annealing temperature generated by annealing curve analysis. Their unique annealing temperatures were found to be 85.56±0.07℃ for cattle, 84.96±0.08℃ for pig, and 85.99±0.05℃ for horse in the BSE-LAMP set (Bos taurus, Sus scrofa domesticus and Equus caballus); 84.91±0.11℃ for goat and 83.90±0.11℃ for sheep in the CO-LAMP set (Capra hircus and Ovis aries); and 86.31±0.23℃ for chicken, 88.66±0.12℃ for duck, and 84.49±0.08℃ for turkey in the GAM-LAMP set (Gallus gallus, Anas platyrhynchos and Meleagris gallopavo). No cross-reactivity was observed in each set. The limits of detection (LODs) of the LAMP assays in raw and cooked meat were determined from 10 pg/μL to 100 fg/μL levels, and LODs in raw and cooked meat admixtures were determined from 0.01% to 0.0001% levels. The assays were performed within 30 min and showed greater sensitivity than that of the PCR assays. These novel LAMP assays provide a simple, rapid, accurate, and sensitive technology for discrimination of eight meat species.

[1]  P S Girish,et al.  Sequence analysis of mitochondrial 12S rRNA gene can identify meat species. , 2004, Meat science.

[2]  A. Gulluce,et al.  Identification of meat species by TaqMan-based real-time PCR assay. , 2009, Meat science.

[3]  T. García,et al.  Identification of goose, mule duck, chicken, turkey, and swine in foie gras by species-specific polymerase chain reaction. , 2003, Journal of agricultural and food chemistry.

[4]  M. T. Bottero,et al.  Animal species identification in food products: evolution of biomolecular methods. , 2011, Veterinary journal.

[5]  H. Proom The preparation of precipitating sera for the identification of animal species , 1943 .

[6]  I. Martinez,et al.  Species identification in meat products by RAPD analysis , 1998 .

[7]  R. Whittaker,et al.  An enzyme‐linked immunosorbent assay for species identification of raw meat , 1983 .

[8]  K. Klimpel,et al.  Improvement in the specificity and sensitivity of detection for the Taura syndrome virus and yellow head virus of penaeid shrimp by increasing the amplicon size in SYBR Green real-time RT-PCR. , 2003, Journal of virological methods.

[9]  Ji-Yeon Kim,et al.  Development of species-specific multiplex PCR assays of mitochondrial 12S rRNA and 16S rRNA for the identification of animal species , 2011 .

[10]  S. Garrett,et al.  Detection of meat species using TaqMan real-time PCR assays. , 2004, Meat science.

[11]  I. Kandarakis,et al.  Identification and differentiation of goat and sheep milk based on diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) using cluster analysis , 2008 .

[12]  Masato Saito,et al.  Meat species identification based on the loop mediated isothermal amplification and electrochemical DNA sensor , 2010 .

[13]  Jacques Schrenzel,et al.  Robustness of a loop-mediated isothermal amplification reaction for diagnostic applications. , 2011, FEMS immunology and medical microbiology.

[14]  P. Hebert,et al.  Identification of Birds through DNA Barcodes , 2004, PLoS biology.

[15]  J. Lenstra,et al.  Differentiation of cattle species in beef by PCR-RFLP of mitochondrial and satellite DNA. , 2002, Meat science.

[16]  J. Rentsch,et al.  PCR-RFLP analysis of mitochondrial DNA: a reliable method for species identification. , 1999, Journal of agricultural and food chemistry.

[17]  Rob Ogden,et al.  Validation of the barcoding gene COI for use in forensic genetic species identification. , 2007, Forensic science international.

[18]  M. T. Bottero,et al.  A multiplex PCR assay for the identification of animal species in feedstuffs. , 2004, Molecular and cellular probes.

[19]  J. Neigel,et al.  Intraspecific Phylogeography: The Mitochondrial DNA Bridge Between Population Genetics and Systematics , 1987 .

[20]  C. Gill Safety and storage stability of horse meat for human consumption. , 2005, Meat science.

[21]  T. García,et al.  Species-specific PCR for the identification of ruminant species in feedstuffs. , 2007, Meat science.

[22]  F. Şahin,et al.  Detection of chicken and turkey meat in meat mixtures by using real-time PCR assays. , 2012, Journal of food science.

[23]  C. Hitchcock,et al.  Methodology for meat species identification: A review. , 1985, Meat science.

[24]  K. Chikuni,et al.  Species identification of cooked meats by DNA hybridization assay. , 1990, Meat science.

[25]  F. Vogensen,et al.  Species determination - Can we detect and quantify meat adulteration? , 2009, Meat science.

[26]  M. Abasiyanik,et al.  The devolopment of duplex real-time PCR based on SYBR Green florescence for rapid ıdentification of ruminant and poultry origins in foodstuff , 2012 .

[27]  J. Chisholm,et al.  The detection of horse and donkey using real-time PCR. , 2005, Meat science.

[28]  M. Shimokomaki,et al.  Hamburger meat identification by dot-ELISA. , 2000, Meat science.

[29]  D. James,et al.  Detection and differentiation of Plum pox virus using real-time multiplex PCR with SYBR Green and melting curve analysis: a rapid method for strain typing. , 2005, Journal of virological methods.

[30]  J. Spearow,et al.  The effects of curing and cooking on the detection of species origin of meat products by competitive and indirect ELISA techniques. , 1987, Meat science.

[31]  Yasuyoshi Mori,et al.  Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products , 2008, Nature Protocols.

[32]  V. S. Melo,et al.  Identification of hare meat by a species-specific marker of mitochondrial origin. , 2012, Meat science.

[33]  C. Weng,et al.  Investigation of Goats??Milk Adulteration with Cows??Milk by PCR , 2006 .

[34]  A. Slater,et al.  A TaqMan real-time PCR system for the identification and quantification of bovine DNA in meats, milks and cheeses , 2007 .

[35]  Li-rong Huang,et al.  Species-specific multiplex real-time PCR assay for identification of deer and common domestic animals , 2014, Food Science and Biotechnology.