Genome-wide analysis of the NAC transcription factor family in Tartary buckwheat (Fagopyrum tataricum)

[1]  Chenglei Li,et al.  Genome-wide investigation of the MADS gene family and dehulling genes in tartary buckwheat (Fagopyrum tataricum) , 2019, Planta.

[2]  P. Yao,et al.  Cloning, Characterization, and Expression Analysis of Eight Stress-Related NAC Genes in Tartary Buckwheat , 2019, Crop Science.

[3]  Chenglei Li,et al.  Genome-Wide Investigation of the Auxin Response Factor Gene Family in Tartary Buckwheat (Fagopyrum tataricum) , 2018, International journal of molecular sciences.

[4]  Chenglei Li,et al.  The Potential Role of Auxin and Abscisic Acid Balance and FtARF2 in the Final Size Determination of Tartary Buckwheat Fruit , 2018, International journal of molecular sciences.

[5]  Chenglei Li,et al.  Insights into the correlation between Physiological changes in and seed development of tartary buckwheat (Fagopyrum tataricum Gaertn.) , 2018, BMC Genomics.

[6]  Jing Liu,et al.  De novo assembly of a Chinese soybean genome , 2018, Science China Life Sciences.

[7]  A. Brożyna,et al.  Transplantable Melanomas in Hamsters and Gerbils as Models for Human Melanoma. Sensitization in Melanoma Radiotherapy—From Animal Models to Clinical Trials , 2018, International journal of molecular sciences.

[8]  W. Ge,et al.  Genome-Wide Analyses of the NAC Transcription Factor Gene Family in Pepper (Capsicum annuum L.): Chromosome Location, Phylogeny, Structure, Expression Patterns, Cis-Elements in the Promoter, and Interaction Network , 2018, International journal of molecular sciences.

[9]  Peer Bork,et al.  20 years of the SMART protein domain annotation resource , 2017, Nucleic Acids Res..

[10]  Y. Assefa,et al.  Major Management Factors Determining Spring and Winter Canola Yield in North America , 2018 .

[11]  Dan Zou,et al.  The cotton (Gossypium hirsutum) NAC transcription factor (FSN1) as a positive regulator participates in controlling secondary cell wall biosynthesis and modification of fibers. , 2018, The New phytologist.

[12]  K. Hura,et al.  Biochemical and Physicochemical Background of Mammalian Androgen Activity in Winter Wheat Exposed to Low Temperature , 2018, Journal of Plant Growth Regulation.

[13]  Xiaopeng Luo,et al.  An R2R3-MYB Transcription Factor FtMYB15 Involved in the Synthesis of Anthocyanin and Proanthocyanidins from Tartary Buckwheat , 2018, Journal of Plant Growth Regulation.

[14]  Jiayang Li,et al.  Witnessing the advance of science and technology in life sciences in the new era , 2018, Science China Life Sciences.

[15]  Yan Li,et al.  The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance. , 2017, Molecular plant.

[16]  C. Uauy,et al.  Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat , 2017, G3: Genes, Genomes, Genetics.

[17]  L. Rieseberg,et al.  The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution , 2017, Nature.

[18]  Fengning Xiang,et al.  Evolutionary and Functional Analysis of Membrane-Bound NAC Transcription Factor Genes in Soybean1 , 2016, Plant Physiology.

[19]  Xiao Yang,et al.  Genome-wide investigation of the NAC transcription factor family in melon (Cucumis melo L.) and their expression analysis under salt stress , 2016, Plant Cell Reports.

[20]  Xiaocui Ma,et al.  Suppression of tomato SlNAC1 transcription factor delays fruit ripening. , 2016, Journal of plant physiology.

[21]  P. Khurana,et al.  Genome-wide analysis, expression dynamics and varietal comparison of NAC gene family at various developmental stages in Morus notabilis , 2016, Molecular Genetics and Genomics.

[22]  Bihua Chen,et al.  Characterization and expression profile of CaNAC2 pepper gene , 2015, Front. Plant Sci..

[23]  Wei Hu,et al.  Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava , 2015, PloS one.

[24]  H. Endo,et al.  NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants , 2015, Front. Plant Sci..

[25]  A. Burian,et al.  The CUP-SHAPED COTYLEDON2 and 3 genes have a post-meristematic effect on Arabidopsis thaliana phyllotaxis. , 2015, Annals of botany.

[26]  Dong Li,et al.  Overexpression of tomato SlNAC1 transcription factor alters fruit pigmentation and softening , 2014, BMC Plant Biology.

[27]  Zheng-Hua Ye,et al.  Arabidopsis NAC Domain Proteins, VND1 to VND5, Are Transcriptional Regulators of Secondary Wall Biosynthesis in Vessels , 2014, PloS one.

[28]  F. Hossain,et al.  Genome-wide identification and expression pattern of drought-responsive members of the NAC family in maize , 2014, Meta gene.

[29]  A. Xiong,et al.  Genome wide analysis of the NAC transcription factor family in Chinese cabbage to elucidate responses to temperature stress , 2014 .

[30]  Alexander Goesmann,et al.  The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) , 2013, Nature.

[31]  M. Rouard,et al.  Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots , 2014, Plant Molecular Biology.

[32]  Y. Hao,et al.  Genome-wide analysis and identification of stress-responsive genes of the NAM-ATAF1,2-CUC2 transcription factor family in apple. , 2013, Plant physiology and biochemistry : PPB.

[33]  Dong‐Wook Kim,et al.  Extract of buckwheat sprouts scavenges oxidation and inhibits pro-inflammatory mediators in lipopolysaccharide-stimulated macrophages (RAW264.7). , 2013, Journal of integrative medicine.

[34]  Anil Kumar Singh,et al.  Genome-Wide Organization and Expression Profiling of the NAC Transcription Factor Family in Potato (Solanum tuberosum L.) , 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.

[35]  K. Paek,et al.  ATAF2, a NAC transcription factor, binds to the promoter and regulates NIT2 gene expression involved in auxin biosynthesis , 2012, Molecules and cells.

[36]  H. Tsai,et al.  Bioactivity comparison of extracts from various parts of common and tartary buckwheats: evaluation of the antioxidant- and angiotensin-converting enzyme inhibitory activities , 2012, Chemistry Central Journal.

[37]  Manoj Prasad,et al.  NAC proteins: regulation and role in stress tolerance. , 2012, Trends in plant science.

[38]  Jeremy D. DeBarry,et al.  MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity , 2012, Nucleic acids research.

[39]  A. Myburg,et al.  SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus , 2011, BMC Plant Biology.

[40]  Hong Jin,et al.  Anti-Fatigue Properties of Tartary Buckwheat Extracts in Mice , 2011, International journal of molecular sciences.

[41]  Kazuo Shinozaki,et al.  Genome-Wide Survey and Expression Analysis of the Plant-Specific NAC Transcription Factor Family in Soybean During Development and Dehydration Stress , 2011, DNA research : an international journal for rapid publication of reports on genes and genomes.

[42]  Stefan R. Henz,et al.  Reference-guided assembly of four diverse Arabidopsis thaliana genomes , 2011, Proceedings of the National Academy of Sciences.

[43]  Robert D. Finn,et al.  HMMER web server: interactive sequence similarity searching , 2011, Nucleic Acids Res..

[44]  Liang Tang,et al.  PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database , 2010, Nucleic Acids Res..

[45]  Shoshi Kikuchi,et al.  Genome-wide analysis of NAC transcription factor family in rice. , 2010, Gene.

[46]  Tamao Saito,et al.  Overexpression of the NAC transcription factor family gene ANAC036 results in a dwarf phenotype in Arabidopsis thaliana. , 2010, Journal of plant physiology.

[47]  R. Dixon,et al.  An NAC transcription factor orchestrates multiple features of cell wall development in Medicago truncatula. , 2010, The Plant journal : for cell and molecular biology.

[48]  M. K. Jensen,et al.  The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling. , 2010, The Biochemical journal.

[49]  L. Xiong,et al.  Erratum to: Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice , 2010, Plant Molecular Biology.

[50]  L. Holm,et al.  The Pfam protein families database , 2005, Nucleic Acids Res..

[51]  M. Grusak,et al.  Wheat (Triticum aestivum) NAM proteins regulate the translocation of iron, zinc, and nitrogen compounds from vegetative tissues to grain. , 2009, Journal of experimental botany.

[52]  Qi Xie,et al.  Dual function of Arabidopsis ATAF1 in abiotic and biotic stress responses , 2009, Cell Research.

[53]  M. Grusak,et al.  Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor , 2009, Planta.

[54]  Mikael Bodén,et al.  MEME Suite: tools for motif discovery and searching , 2009, Nucleic Acids Res..

[55]  E. Birney,et al.  Pfam: the protein families database , 2013, Nucleic Acids Res..

[56]  Nobutaka Mitsuda,et al.  NAC transcription factors NST1 and NST3 regulate pod shattering in a partially redundant manner by promoting secondary wall formation after the establishment of tissue identity. , 2008, The Plant journal : for cell and molecular biology.

[57]  Kiyoshi Matsumoto,et al.  Endothelium-dependent vasorelaxation effect of rutin-free tartary buckwheat extract in isolated rat thoracic aorta. , 2008, The Journal of nutritional biochemistry.

[58]  L. Xiong,et al.  Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice , 2008, Plant Molecular Biology.

[59]  Chengsong Zhao,et al.  XND1, a member of the NAC domain family in Arabidopsis thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem. , 2007, The Plant journal : for cell and molecular biology.

[60]  J. Poulain,et al.  The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla , 2007, Nature.

[61]  K. Shinozaki,et al.  Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. , 2007, The Plant journal : for cell and molecular biology.

[62]  R. Zhong,et al.  Two NAC domain transcription factors, SND1 and NST1, function redundantly in regulation of secondary wall synthesis in fibers of Arabidopsis , 2007, Planta.

[63]  K. Shinozaki,et al.  NAC Transcription Factors, NST1 and NST3, Are Key Regulators of the Formation of Secondary Walls in Woody Tissues of Arabidopsis[W][OA] , 2007, The Plant Cell Online.

[64]  Ingo Dreyer,et al.  PlnTFDB: an integrative plant transcription factor database , 2007, BMC Bioinformatics.

[65]  J. Dubcovsky,et al.  A NAC Gene Regulating Senescence Improves Grain Protein, Zinc, and Iron Content in Wheat , 2006, Science.

[66]  Youn-sung Kim,et al.  A Membrane-Bound NAC Transcription Factor Regulates Cell Division in Arabidopsis[W] , 2006, The Plant Cell Online.

[67]  K. Hibara,et al.  Arabidopsis CUP-SHAPED COTYLEDON3 Regulates Postembryonic Shoot Meristem and Organ Boundary Formation[W] , 2006, The Plant Cell Online.

[68]  P. Laufs,et al.  The Balance between the MIR164A and CUC2 Genes Controls Leaf Margin Serration in Arabidopsis[W] , 2006, The Plant Cell Online.

[69]  V. Sundaresan.  Control of seed size in plants. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[70]  R. Van der Hoeven,et al.  Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments , 2005, Theoretical and Applied Genetics.

[71]  S. Chen,et al.  AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. , 2005, The Plant journal : for cell and molecular biology.

[72]  K. Shinozaki,et al.  The NAC Transcription Factors NST1 and NST2 of Arabidopsis Regulate Secondary Wall Thickenings and Are Required for Anther Dehiscencew⃞ , 2005, The Plant Cell Online.

[73]  Tetsuro Mimura,et al.  Transcription switches for protoxylem and metaxylem vessel formation. , 2005, Genes & development.

[74]  U. Wobus,et al.  Molecular physiology of legume seed development. , 2005, Annual review of plant biology.

[75]  Addie Nina Olsen,et al.  NAC transcription factors: structurally distinct, functionally diverse. , 2005, Trends in plant science.

[76]  J. Randles,et al.  A NAC Domain Protein Interacts with Tomato leaf curl virus Replication Accessory Protein and Enhances Viral Replication , 2005, The Plant Cell Online.

[77]  Kazuo Shinozaki,et al.  A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. , 2004, The Plant journal : for cell and molecular biology.

[78]  Kazuo Shinozaki,et al.  Isolation and Functional Analysis of Arabidopsis Stress-Inducible NAC Transcription Factors That Bind to a Drought-Responsive cis-Element in the early responsive to dehydration stress 1 Promoterw⃞ , 2004, The Plant Cell Online.

[79]  Tzung-Fu Hsieh,et al.  Molecular characterization of AtNAM: a member of theArabidopsis NAC domain superfamily , 2002, Plant Molecular Biology.

[80]  K. Shinozaki,et al.  Isolation and Functional Analysis of Arabidopsis Stress-Inducible NAC Transcription Factors That Bind to a Drought-Responsive cis-Element in the early responsive to dehydration stress 1 Promoter , 2004 .

[81]  Steven B Cannon,et al.  The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana , 2004, BMC Plant Biology.

[82]  Matthew W. Hahn,et al.  The evolution of transcriptional regulation in eukaryotes. , 2003, Molecular biology and evolution.

[83]  K. Hokamp,et al.  A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. , 2003, Genome research.

[84]  Shoshi Kikuchi,et al.  Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. , 2003, DNA research : an international journal for rapid publication of reports on genes and genomes.

[85]  Julie D Thompson,et al.  Multiple Sequence Alignment Using ClustalW and ClustalX , 2003, Current protocols in bioinformatics.

[86]  F. B. Pickett,et al.  Splitting pairs: the diverging fates of duplicated genes , 2002, Nature Reviews Genetics.

[87]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[88]  K. Hibara,et al.  The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical meristem formation. , 2001, Development.

[89]  Sean R. Eddy,et al.  The Pfam protein families database , 2007, Nucleic Acids Res..

[90]  R. R. Samaha,et al.  Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. , 2000, Science.

[91]  D. G. Brown,et al.  The origins of genomic duplications in Arabidopsis. , 2000, Science.

[92]  N. Chua,et al.  Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. , 2000, Genes & development.

[93]  M. Ueguchi-Tanaka,et al.  Molecular analysis of the NAC gene family in rice , 2000, Molecular and General Genetics MGG.

[94]  T. MacRae,et al.  Transcription factors and their genes in higher plants functional domains, evolution and regulation. , 1999, European journal of biochemistry.

[95]  E. Meyerowitz,et al.  A Homolog of NO APICAL MERISTEM Is an Immediate Target of the Floral Homeotic Genes APETALA3/PISTILLATA , 1998, Cell.

[96]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[97]  H Fujisawa,et al.  Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. , 1997, The Plant cell.

[98]  J. Mol,et al.  The No Apical Meristem Gene of Petunia Is Required for Pattern Formation in Embryos and Flowers and Is Expressed at Meristem and Primordia Boundaries , 1996, Cell.

[99]  W. Ruhland,et al.  Die Permeabilität von Beggiatoa Mirabilis. Ein Beitrag zur Ultrafiltertheorie des Plasmas , 1925 .

[100]  Thomas D. Schmittgen,et al.  Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method , 2022 .