A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596

[1]  Michael J. Barratt,et al.  Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition , 2016, Cell.

[2]  H. Neve,et al.  Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut , 2015, Microbiome.

[3]  D. Sinderen,et al.  Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems , 2015, BMC Genomics.

[4]  Danielle G. Lemay,et al.  Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria , 2015, Scientific Reports.

[5]  T. Hennet,et al.  Sialic acid catabolism drives intestinal inflammation and microbial dysbiosis in mice , 2015, Nature Communications.

[6]  D. Mills,et al.  Diet shapes the gut microbiome of pigs during nursing and weaning , 2015, Microbiome.

[7]  J. Xuan,et al.  BMRF-MI: integrative identification of protein interaction network by modeling the gene dependency , 2015, BMC Genomics.

[8]  M. O'Connell Motherway,et al.  Cross-feeding by Bifidobacterium breve UCC2003 during co-cultivation with Bifidobacterium bifidum PRL2010 in a mucin-based medium , 2014, BMC Microbiology.

[9]  Rustem F. Ismagilov,et al.  Rapid fucosylation of intestinal epithelium sustains host-commensal symbiosis in sickness , 2014, Nature.

[10]  S. Zeissig,et al.  Life at the beginning: perturbation of the microbiota by antibiotics in early life and its role in health and disease , 2014, Nature Immunology.

[11]  A. Stromberg,et al.  Secretory antibodies in breast milk promote long-term intestinal homeostasis by regulating the gut microbiota and host gene expression , 2014, Proceedings of the National Academy of Sciences.

[12]  Pornpan Pumirat,et al.  The role of short-chain dehydrogenase/oxidoreductase, induced by salt stress, on host interaction of B. pseudomallei , 2014, BMC Microbiology.

[13]  J. German,et al.  The human milk metabolome reveals diverse oligosaccharide profiles. , 2013, The Journal of nutrition.

[14]  M. Icaza-Chávez,et al.  Gut microbiota in health and disease , 2013 .

[15]  Bin Wen,et al.  Genome Sequence of the Bacterium Bifidobacterium longum Strain CMCC P0001, a Probiotic Strain Used for Treating Gastrointestinal Disease , 2013, Genome Announcements.

[16]  Wim Soetaert,et al.  Unraveling the Leloir Pathway of Bifidobacterium bifidum: Significance of the Uridylyltransferases , 2013, Applied and Environmental Microbiology.

[17]  C. Lebrilla,et al.  Variation in Consumption of Human Milk Oligosaccharides by Infant Gut-Associated Strains of Bifidobacterium breve , 2013, Applied and Environmental Microbiology.

[18]  M. Kitaoka,et al.  Lacto-N-biosidase Encoded by a Novel Gene of Bifidobacterium longum Subspecies longum Shows Unique Substrate Specificity and Requires a Designated Chaperone for Its Active Expression* , 2013, The Journal of Biological Chemistry.

[19]  D. Block,et al.  Utilization of galactooligosaccharides by Bifidobacterium longum subsp. infantis isolates. , 2013, Food microbiology.

[20]  D. Dallas,et al.  Consumption of human milk glycoconjugates by infant-associated bifidobacteria: mechanisms and implications. , 2013, Microbiology.

[21]  Elisabeth M. Bik,et al.  Distinct Distal Gut Microbiome Diversity and Composition in Healthy Children from Bangladesh and the United States , 2013, PloS one.

[22]  L. R. Ruhaak,et al.  Comprehensive profiles of human milk oligosaccharides yield highly sensitive and specific markers for determining secretor status in lactating mothers. , 2012, Journal of proteome research.

[23]  E. Avershina,et al.  Bifidobacterial Succession and Correlation Networks in a Large Unselected Cohort of Mothers and Their Children , 2012, Applied and Environmental Microbiology.

[24]  V. Sperandio,et al.  Fucose Sensing Regulates Bacterial Intestinal Colonization , 2012, Nature.

[25]  John S. Strum,et al.  Lacto-N-tetraose, fucosylation, and secretor status are highly variable in human milk oligosaccharides from women delivering preterm. , 2012, Journal of proteome research.

[26]  D. Mills,et al.  Release and utilization of N-acetyl-D-glucosamine from human milk oligosaccharides by Bifidobacterium longum subsp. infantis. , 2012, Anaerobe.

[27]  C. Lebrilla,et al.  Endo-β-N-acetylglucosaminidases from Infant Gut-associated Bifidobacteria Release Complex N-glycans from Human Milk Glycoproteins* , 2012, Molecular & Cellular Proteomics.

[28]  M. Severgnini,et al.  Diversity of Bifidobacteria within the Infant Gut Microbiota , 2012, PloS one.

[29]  J. Clemente,et al.  Human gut microbiome viewed across age and geography , 2012, Nature.

[30]  R. Oozeer,et al.  The early settlers: intestinal microbiology in early life. , 2012, Annual review of food science and technology.

[31]  M. Kitaoka,et al.  Bifidobacterium longum subsp. infantis uses two different β-galactosidases for selectively degrading type-1 and type-2 human milk oligosaccharides. , 2012, Glycobiology.

[32]  A. Joachimiak,et al.  Bifidobacterium longum subsp. infantis ATCC 15697 α-Fucosidases Are Active on Fucosylated Human Milk Oligosaccharides , 2011, Applied and Environmental Microbiology.

[33]  M. Kitaoka,et al.  Physiology of Consumption of Human Milk Oligosaccharides by Infant Gut-associated Bifidobacteria* , 2011, The Journal of Biological Chemistry.

[34]  M. Blaser,et al.  Development of the human gastrointestinal microbiota and insights from high-throughput sequencing. , 2011, Gastroenterology.

[35]  Kenji Yamamoto,et al.  An exo-alpha-sialidase from bifidobacteria involved in the degradation of sialyloligosaccharides in human milk and intestinal glycoconjugates. , 2011, Glycobiology.

[36]  J. German,et al.  Oligosaccharide Binding Proteins from Bifidobacterium longum subsp. infantis Reveal a Preference for Host Glycans , 2011, PloS one.

[37]  C. Lebrilla,et al.  Annotation and structural analysis of sialylated human milk oligosaccharides. , 2011, Journal of proteome research.

[38]  X. Chen,et al.  An Infant-associated Bacterial Commensal Utilizes Breast Milk Sialyloligosaccharides* , 2011, The Journal of Biological Chemistry.

[39]  M. Hattori,et al.  Bifidobacteria can protect from enteropathogenic infection through production of acetate , 2011, Nature.

[40]  A. McCartney,et al.  Longitudinal investigation of the faecal microbiota of healthy full-term infants using fluorescence in situ hybridization and denaturing gradient gel electrophoresis. , 2010, Microbiology.

[41]  Aldert L. Zomer,et al.  Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging , 2010, Proceedings of the National Academy of Sciences.

[42]  B. Weimer,et al.  Broad Conservation of Milk Utilization Genes in Bifidobacterium longum subsp. infantis as Revealed by Comparative Genomic Hybridization , 2010, Applied and Environmental Microbiology.

[43]  C. Lebrilla,et al.  Development of an annotated library of neutral human milk oligosaccharides. , 2010, Journal of proteome research.

[44]  D. Mills,et al.  Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides. , 2010, Trends in microbiology.

[45]  B. Finlay,et al.  Gut microbiota in health and disease. , 2010, Physiological reviews.

[46]  S. Brisse,et al.  Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing. , 2010, Research in microbiology.

[47]  M. Kitaoka,et al.  Bifidobacterium bifidum Lacto-N-Biosidase, a Critical Enzyme for the Degradation of Human Milk Oligosaccharides with a Type 1 Structure , 2009, Applied and Environmental Microbiology.

[48]  H. Kumagai,et al.  Two distinct alpha-L-fucosidases from Bifidobacterium bifidum are essential for the utilization of fucosylated milk oligosaccharides and glycoconjugates. , 2009, Glycobiology.

[49]  Scott R. Kronewitter,et al.  A versatile and scalable strategy for glycoprofiling bifidobacterial consumption of human milk oligosaccharides , 2009, Microbial biotechnology.

[50]  J. Chapman,et al.  The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome , 2008, Proceedings of the National Academy of Sciences.

[51]  Kazutaka Katoh,et al.  Recent developments in the MAFFT multiple sequence alignment program , 2008, Briefings Bioinform..

[52]  W. D. de Vos,et al.  Differential Transcriptional Response of Bifidobacterium longum to Human Milk, Formula Milk, and Galactooligosaccharide , 2008, Applied and Environmental Microbiology.

[53]  Ju-Hoon Lee,et al.  Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth , 2008, BMC Genomics.

[54]  M. Kitaoka,et al.  Bifidobacterium bifidum Lacto-N-Biosidase, a Critical Enzyme for the Degradation of Human Milk Oligosaccharides with a Type 1 Structure , 2008, Applied and Environmental Microbiology.

[55]  R. Suzuki,et al.  Structural and Thermodynamic Analyses of Solute-binding Protein from Bifidobacterium longum Specific for Core 1 Disaccharide and Lacto-N-biose I* , 2008, Journal of Biological Chemistry.

[56]  S. Salminen,et al.  Early differences in fecal microbiota composition in children may predict overweight. , 2008, The American journal of clinical nutrition.

[57]  A. Margolles,et al.  Mucin Degradation by Bifidobacterium Strains Isolated from the Human Intestinal Microbiota , 2008, Applied and Environmental Microbiology.

[58]  C. Lebrilla,et al.  Glycoprofiling of bifidobacterial consumption of human milk oligosaccharides demonstrates strain specific, preferential consumption of small chain glycans secreted in early human lactation. , 2007, Journal of agricultural and food chemistry.

[59]  M. Nishimoto,et al.  Identification of N-Acetylhexosamine 1-Kinase in the Complete Lacto-N-Biose I/Galacto-N-Biose Metabolic Pathway in Bifidobacterium longum , 2007, Applied and Environmental Microbiology.

[60]  Rudolf Grimm,et al.  A strategy for annotating the human milk glycome. , 2006, Journal of agricultural and food chemistry.

[61]  C. Lebrilla,et al.  In Vitro Fermentation of Breast Milk Oligosaccharides by Bifidobacterium infantis and Lactobacillus gasseri , 2006, Applied and Environmental Microbiology.

[62]  D. Bryant,et al.  A Simple and Robust Statistical Test for Detecting the Presence of Recombination , 2006, Genetics.

[63]  D. Jacobs,et al.  Lactose-over-Glucose Preference in Bifidobacterium longum NCC2705: glcP, Encoding a Glucose Transporter, Is Subject to Lactose Repression , 2006, Journal of bacteriology.

[64]  Inna Dubchak,et al.  The integrated microbial genomes (IMG) system , 2005, Nucleic Acids Res..

[65]  K. Fujita,et al.  Identification and Molecular Cloning of a Novel Glycoside Hydrolase Family of Core 1 Type O-Glycan-specific Endo-α-N-acetylgalactosaminidase from Bifidobacterium longum* , 2005, Journal of Biological Chemistry.

[66]  Peer Bork,et al.  The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[67]  Wei Qian,et al.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.

[68]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[69]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[70]  V. Tremaroli,et al.  Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life. , 2015, Cell host & microbe.

[71]  Mathias Allemand,et al.  Mechanisms and Implications , 2013 .

[72]  D. Oh,et al.  Quantitative Comparison of Lactose and Glucose Utilization in Bifidobacteriumlongum Cultures , 2003, Biotechnology progress.

[73]  N Klein,et al.  Oligosaccharides in human milk: structural, functional, and metabolic aspects. , 2000, Annual review of nutrition.