Human oral viruses are personal, persistent and gender-consistent
暂无分享,去创建一个
Julia Salzman | Refugio Robles-Sikisaka | Melissa Ly | D. Pride | J. Salzman | S. Abeles | T. Boehm | R. Robles-Sikisaka | David T Pride | Shira R Abeles | Melissa Ly | Andrew G Lum | Tobias K Boehm
[1] Leah M. Feazel,et al. Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity , 2013, Science.
[2] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[3] F. Bäckhed,et al. Obesity alters gut microbial ecology. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[4] Robert C. Edgar,et al. BIOINFORMATICS APPLICATIONS NOTE , 2001 .
[5] Peter Salamon,et al. Viral and microbial community dynamics in four aquatic environments , 2010, The ISME Journal.
[6] Christine L. Sun,et al. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. , 2011, Genome research.
[7] Florent E. Angly,et al. Biodiversity and biogeography of phages in modern stromatolites and thrombolites , 2008, Nature.
[8] E. Halperin,et al. Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota , 2011, Microbial Ecology.
[9] T. D. Read,et al. Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis , 2003, Science.
[10] W. Wade,et al. The oral microbiome in health and disease. , 2013, Pharmacological research.
[11] R. Knight,et al. The influence of sex, handedness, and washing on the diversity of hand surface bacteria , 2008, Proceedings of the National Academy of Sciences.
[12] F. Rohwer,et al. Explaining microbial population genomics through phage predation , 2009, Nature Reviews Microbiology.
[13] N. Cohen,et al. Genomic and Functional Analyses of Rhodococcus equi Phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7 , 2010, Applied and Environmental Microbiology.
[14] Charlotte E. Egan,et al. Inflammation Drives Dysbiosis and Bacterial Invasion in Murine Models of Ileal Crohn’s Disease , 2012, PloS one.
[15] D. Relman,et al. Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. , 2012, Environmental microbiology.
[16] E. Sintes,et al. Dynamics and diversity of newly produced virioplankton in the North Sea , 2008, The ISME Journal.
[17] Eoin L. Brodie,et al. Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.
[18] Wayne M. Getz,et al. Persisting Viral Sequences Shape Microbial CRISPR-based Immunity , 2012, PLoS Comput. Biol..
[19] Mitsuhiro Yoshida,et al. Metagenomic Analysis of Viral Communities in (Hado)Pelagic Sediments , 2013, PloS one.
[20] Katherine H. Huang,et al. Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.
[21] Haixu Tang,et al. CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes , 2013, Genome Biology.
[22] J. Gunsolley,et al. Oral Microbiome of Deep and Shallow Dental Pockets In Chronic Periodontitis , 2013, PloS one.
[23] J. Maniloff,et al. Virus taxonomy : eighth report of the International Committee on Taxonomy of Viruses , 2005 .
[24] Adam Godzik,et al. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..
[25] F. Bushman,et al. The human gut virome: inter-individual variation and dynamic response to diet. , 2011, Genome research.
[26] E. Mardis,et al. An obesity-associated gut microbiome with increased capacity for energy harvest , 2006, Nature.
[27] M. Weinbauer,et al. Viral control of bacterial biodiversity--evidence from a nutrient-enriched marine mesocosm experiment. , 2009, Environmental microbiology.
[28] Melissa Ly,et al. Association between living environment and human oral viral ecology , 2013, The ISME Journal.
[29] Alok J. Saldanha,et al. Java Treeview - extensible visualization of microarray data , 2004, Bioinform..
[30] Anthony O'Donnell,et al. Microbial 16S rRNA Ion Tag and community metagenome sequencing using the Ion Torrent (PGM) Platform. , 2012, Journal of microbiological methods.
[31] Daniel J. Nasko,et al. VIROME: a standard operating procedure for analysis of viral metagenome sequences , 2012, Standards in genomic sciences.
[32] É. Gay,et al. Patterns and mechanisms of beta-lactam resistance among isolates of Escherichia coli from hospitals in the United States , 1990, Antimicrobial Agents and Chemotherapy.
[33] J. Slots,et al. Risk indicators for harboring periodontal pathogens. , 1998, Journal of periodontology.
[34] Forest Rohwer,et al. Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals , 2009, PloS one.
[35] L. Hooper,et al. A composite bacteriophage alters colonization by an intestinal commensal bacterium , 2012, Proceedings of the National Academy of Sciences.
[36] S. Yooseph,et al. Metagenomic investigation of microbes and viruses in patients with jaw osteonecrosis associated with bisphosphonate therapy. , 2012, Oral surgery, oral medicine, oral pathology and oral radiology.
[37] P. Turnbaugh,et al. Microbial ecology: Human gut microbes associated with obesity , 2006, Nature.
[38] B. Andresen,et al. Genomic analysis of uncultured marine viral communities , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[39] H Löe,et al. The Gingival Index, the Plaque Index and the Retention Index Systems. , 1967, Journal of periodontology.
[40] Frederic D Bushman,et al. Rapid evolution of the human gut virome , 2013, Proceedings of the National Academy of Sciences.
[41] Bernard P. Puc,et al. An integrated semiconductor device enabling non-optical genome sequencing , 2011, Nature.
[42] Rob Knight,et al. PyNAST: a flexible tool for aligning sequences to a template alignment , 2009, Bioinform..
[43] Nicolas Produit,et al. Loss of Sex and Age Driven Differences in the Gut Microbiome Characterize Arthritis-Susceptible *0401 Mice but Not Arthritis-Resistant *0402 Mice , 2012, PloS one.
[44] J. Doré,et al. Colonic Microbiota Signatures across Five Northern European Countries , 2005, Applied and Environmental Microbiology.
[45] Chun Xing Li,et al. Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis , 2011, BMC oral health.
[46] Haifeng Lu,et al. Symbiotic gut microbes modulate human metabolic phenotypes , 2008, Proceedings of the National Academy of Sciences.
[47] Purnima S. Kumar. Sex and the subgingival microbiome: do female sex steroids affect periodontal bacteria? , 2013, Periodontology 2000.
[48] Adam P. Arkin,et al. FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix , 2009, Molecular biology and evolution.
[49] D. Relman,et al. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome , 2011, The ISME Journal.
[50] Rob Knight,et al. UniFrac – An online tool for comparing microbial community diversity in a phylogenetic context , 2006, BMC Bioinformatics.
[51] R. Barrangou,et al. CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes , 2007, Science.
[52] R. K. Rose,et al. The Fecal Viral Flora of Wild Rodents , 2011, PLoS pathogens.
[53] Heather K. Allen,et al. Antibiotics in Feed Induce Prophages in Swine Fecal Microbiomes , 2011, mBio.
[54] L. Moore,et al. The influence of race and gender on periodontal microflora. , 1993, Journal of periodontology.
[55] J. Slots,et al. Age and sex relationships of superinfecting microorganisms in periodontitis patients. , 1990, Oral microbiology and immunology.
[56] P. Salamon,et al. Metagenomic Analyses of an Uncultured Viral Community from Human Feces , 2003, Journal of bacteriology.
[57] J. Izard,et al. The Human Oral Microbiome , 2010, Journal of bacteriology.
[58] D. Debroas,et al. Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics , 2012, PloS one.
[59] Kyoung-Ho Kim,et al. Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses , 2011, Applied and Environmental Microbiology.
[60] J. Tiedje,et al. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.
[61] Forest Rohwer,et al. Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity , 2010, Proceedings of the National Academy of Sciences.
[62] J. Doré,et al. Differences in Fecal Microbiota in Different European Study Populations in Relation to Age, Gender, and Country: a Cross-Sectional Study , 2006, Applied and Environmental Microbiology.
[63] James R. Cole,et al. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis , 2008, Nucleic Acids Res..
[64] T. Staudinger,et al. Molecular analysis of the prevalent microbiota of human male and female forehead skin compared to forearm skin and the influence of make‐up , 2011, Journal of applied microbiology.