A genome wide dosage suppressor network reveals genomic robustness
暂无分享,去创建一个
A. Kaur | N. Baliga | R. R. Vallabhajosyula | C. Adami | D. Galas | J. Schossau | A. Hintze | E. Phizicky | J. Frumkin | B. Marzolf | A. Raval | A. Ray | E. Grayhack | Y. Kon | G. Yadav | B. Patra | A. Sevold | A. Bhan | J. K. Tamashiro | B. Østman | Bruz Marzolf | Amardeep Kaur | Jory Schossau
[1] G. Hong,et al. Nucleic Acids Research , 2015, Nucleic Acids Research.
[2] Bor-Sen Chen,et al. Using Nonlinear Stochastic Evolutionary Game Strategy to Model an Evolutionary Biological Network of Organ Carcinogenesis Under a Natural Selection Scheme , 2015, Evolutionary bioinformatics online.
[3] E. Airoldi,et al. Differential Stoichiometry among Core Ribosomal Proteins , 2014, bioRxiv.
[4] S. Ho,et al. The Stochastic Evolutionary Game for a Population of Biological Networks Under Natural Selection , 2014, Evolutionary bioinformatics online.
[5] A. Raval,et al. Introduction to Biological Networks , 2013 .
[6] D. Luse,et al. Inactivated RNA Polymerase II Open Complexes Can Be Reactivated with TFIIE* , 2011, The Journal of Biological Chemistry.
[7] Yoshinori Watanabe,et al. Condensin association with histone H2A shapes mitotic chromosomes , 2011, Nature.
[8] G. Giaever,et al. Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell , 2011, Nature Biotechnology.
[9] Frederick S. Vizeacoumar,et al. Systematic exploration of essential yeast gene function with temperature-sensitive mutants , 2011, Nature Biotechnology.
[10] Sourav Bandyopadhyay,et al. Rewiring of Genetic Networks in Response to DNA Damage , 2010, Science.
[11] Y. Kashi,et al. Genome-wide analysis of DNA turnover and gene expression in stationary-phase Saccharomyces cerevisiae. , 2010, Microbiology.
[12] Gary D Bader,et al. The Genetic Landscape of a Cell , 2010, Science.
[13] Hiroki Saito,et al. Unexpected consequences of a sudden and massive transposon amplification on rice gene expression , 2009, Nature.
[14] Arend Hintze,et al. Modularity and anti-modularity in networks with arbitrary degree distribution , 2009, Biology Direct.
[15] S. Pu,et al. Up-to-date catalogues of yeast protein complexes , 2008, Nucleic acids research.
[16] István Simon,et al. Malleable Machines in Transcription Regulation: The Mediator Complex , 2008, PLoS Comput. Biol..
[17] F. Sherman,et al. Overexpressed ribosomal proteins suppress defective chaperonins in Saccharomyces cerevisiae. , 2008, FEMS yeast research.
[18] Norman Pavelka,et al. Aneuploidy Underlies Rapid Adaptive Evolution of Yeast Cells Deprived of a Conserved Cytokinesis Motor , 2008, Cell.
[19] Wan Kyu Kim,et al. Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence , 2008, PLoS Comput. Biol..
[20] A. Barabasi,et al. High-Quality Binary Protein Interaction Map of the Yeast Interactome Network , 2008, Science.
[21] P. Mieczkowski,et al. Double-strand breaks associated with repetitive DNA can reshape the genome , 2008, Proceedings of the National Academy of Sciences.
[22] Hiroaki Kitano,et al. Biological robustness , 2008, Nature Reviews Genetics.
[23] G. Servant,et al. Remodeling Yeast Gene Transcription by Activating the Ty1 Long Terminal Repeat Retrotransposon under Severe Adenine Deficiency , 2008, Molecular and Cellular Biology.
[24] Rachel B. Brem,et al. Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks , 2008, Nature Genetics.
[25] C. Landry,et al. An in Vivo Map of the Yeast Protein Interactome , 2008, Science.
[26] E. Raineri,et al. Evolvability and hierarchy in rewired bacterial gene networks , 2008, Nature.
[27] S. Onesti,et al. Unstructured N Terminus of the RNA Polymerase II Subunit Rpb4 Contributes to the Interaction of Rpb4·Rpb7 Subcomplex with the Core RNA Polymerase II of Saccharomyces cerevisiae* , 2008, Journal of Biological Chemistry.
[28] G. Wagner,et al. The road to modularity , 2007, Nature Reviews Genetics.
[29] Wayne M Patrick,et al. Multicopy suppression underpins metabolic evolvability. , 2007, Molecular biology and evolution.
[30] Arend Hintze,et al. Evolution of Complex Modular Biological Networks , 2007, PLoS Comput. Biol..
[31] S. Gygi,et al. Mek1 Kinase Is Regulated To Suppress Double-Strand Break Repair between Sister Chromatids during Budding Yeast Meiosis , 2007, Molecular and Cellular Biology.
[32] Grant W. Brown,et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map , 2007, Nature.
[33] Ronald W. Davis,et al. High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing , 2007, Proceedings of the National Academy of Sciences.
[34] Xiaomei Wu,et al. Prediction of yeast protein–protein interaction network: insights from the Gene Ontology and annotations , 2006, Nucleic acids research.
[35] John Doyle,et al. Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System , 2006, PLoS Comput. Biol..
[36] P. Bork,et al. Proteome survey reveals modularity of the yeast cell machinery , 2006, Nature.
[37] Sean R. Collins,et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae , 2006, Nature.
[38] Mike Tyers,et al. BioGRID: a general repository for interaction datasets , 2005, Nucleic Acids Res..
[39] Mark Gerstein,et al. Biochemical and genetic analysis of the yeast proteome with a movable ORF collection. , 2005, Genes & development.
[40] M. Osley,et al. Chromatin remodelling at a DNA double-strand break site in Saccharomyces cerevisiae , 2005, Nature.
[41] Kevin P. Byrne,et al. The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. , 2005, Genome research.
[42] Marc Vidal,et al. Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis , 2005, Nature.
[43] T. Hirano,et al. Dynamic molecular linkers of the genome: the first decade of SMC proteins. , 2005, Genes & development.
[44] D. Koshland,et al. Rings, bracelet or snaps: fashionable alternatives for Smc complexes , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.
[45] Hunter B. Fraser,et al. Modularity and evolutionary constraint on proteins , 2005, Nature Genetics.
[46] R. Guimerà,et al. Functional cartography of complex metabolic networks , 2005, Nature.
[47] John C. Doyle,et al. Surviving heat shock: control strategies for robustness and performance. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[48] Lan V. Zhang,et al. Evidence for dynamically organized modularity in the yeast protein–protein interaction network , 2004, Nature.
[49] Nicholas T Ingolia,et al. Topology and Robustness in the Drosophila Segment Polarity Network , 2004, PLoS biology.
[50] B. Birren,et al. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae , 2004, Nature.
[51] Roger D Kornberg,et al. Structural Basis of Transcription: An RNA Polymerase II-TFIIB Cocrystal at 4.5 Angstroms , 2004, Science.
[52] Z. Oltvai,et al. Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.
[53] D. Koshland,et al. Meiotic condensin is required for proper chromosome compaction, SC assembly, and resolution of recombination-dependent chromosome linkages , 2003, The Journal of cell biology.
[54] S. Mangan,et al. The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. , 2003, Journal of molecular biology.
[55] M. J. Mallory,et al. Ume1p Represses Meiotic Gene Transcription in Saccharomyces cerevisiae through Interaction with the Histone Deacetylase Rpd3p* , 2003, Journal of Biological Chemistry.
[56] S. Mangan,et al. Structure and function of the feed-forward loop network motif , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[57] M. Newman,et al. Finding and evaluating community structure in networks. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.
[58] T. Speed,et al. Summaries of Affymetrix GeneChip probe level data. , 2003, Nucleic acids research.
[59] Ronald W. Davis,et al. Role of duplicate genes in genetic robustness against null mutations , 2003, Nature.
[60] A. Bergman,et al. Waddington's canalization revisited: Developmental stability and evolution , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[61] Anton J. Enright,et al. An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.
[62] M. Hampsey,et al. The RNA Polymerase II Machinery Structure Illuminates Function , 2002, Cell.
[63] A. Barabasi,et al. Lethality and centrality in protein networks , 2001, Nature.
[64] D. Botstein,et al. Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.
[65] Yudong D. He,et al. Functional Discovery via a Compendium of Expression Profiles , 2000, Cell.
[66] L. Serrano,et al. Engineering stability in gene networks by autoregulation , 2000, Nature.
[67] A. Strunnikov,et al. The Condensin Complex Governs Chromosome Condensation and Mitotic Transmission of Rdna , 2000, The Journal of cell biology.
[68] Ronald W. Davis,et al. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. , 1999, Science.
[69] J. W. Little,et al. Robustness of a gene regulatory circuit , 1999, The EMBO journal.
[70] Michael R. Green,et al. Dissecting the Regulatory Circuitry of a Eukaryotic Genome , 1998, Cell.
[71] Michael Hampsey,et al. Molecular Genetics of the RNA Polymerase II General Transcriptional Machinery , 1998, Microbiology and Molecular Biology Reviews.
[72] N. Kleckner,et al. Interhomolog Bias during Meiotic Recombination: Meiotic Functions Promote a Highly Differentiated Interhomolog-Only Pathway , 1997, Cell.
[73] Martin A. Nowak,et al. Evolution of genetic redundancy , 1997, Nature.
[74] L. Altenberg,et al. PERSPECTIVE: COMPLEX ADAPTATIONS AND THE EVOLUTION OF EVOLVABILITY , 1996, Evolution; international journal of organic evolution.
[75] A. Kondrashov. Sex and deleterious mutation , 1994, Nature.
[76] T. A. Brown,et al. A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. , 1990, Nucleic acids research.
[77] Leonard M. Freeman,et al. A set of measures of centrality based upon betweenness , 1977 .
[78] Michael Karin,et al. Genetic Properties Influencing the Evolvability of Gene Expression , 2007 .
[79] L. Lai,et al. UC San Francisco UC San Francisco Previously Published Works Title Robustness and modular design of the Drosophila segment polarity network , 2006 .
[80] Günter P. Wagner,et al. Complex Adaptations and the Evolution of Evolvability , 2005 .
[81] H. Mewes,et al. The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. , 2004, Nucleic acids research.
[82] P. Hartman,et al. Mechanisms of suppression. , 1973, Advances in genetics.