A pathway for protective quenching in antenna proteins of Photosystem II

[1]  Govindjee,et al.  Role of Ions in the Regulation of Light-Harvesting , 2016, Front. Plant Sci..

[2]  A. Rutherford,et al.  Bicarbonate-induced redox tuning in Photosystem II for regulation and protection , 2016, Proceedings of the National Academy of Sciences.

[3]  Y. M. Rhee,et al.  Electric Field Keeps Chromophore Planar and Produces High Yield Fluorescence in Green Fluorescent Protein. , 2016, Journal of the American Chemical Society.

[4]  N. Ioannidis,et al.  Energizing the light harvesting antenna: Insight from CP29. , 2016, Biochimica et biophysica acta.

[5]  Ville R. I. Kaila,et al.  A Protonated Water Cluster as a Transient Proton-Loading Site in Cytochrome c Oxidase. , 2016, Angewandte Chemie.

[6]  P. Hegemann,et al.  A blue-light photoreceptor mediates the feedback regulation of photosynthesis , 2016, Nature.

[7]  G. Finazzi,et al.  Calredoxin represents a novel type of calcium-dependent sensor-responder connected to redox regulation in the chloroplast , 2016, Nature Communications.

[8]  Ivan Kassal,et al.  Geometry, Supertransfer, and Optimality in the Light Harvesting of Purple Bacteria. , 2016, The journal of physical chemistry letters.

[9]  R. Augulis,et al.  The nature of self-regulation in photosynthetic light-harvesting antenna , 2016, Nature Plants.

[10]  Jeremy C. Smith,et al.  The dynamics of single protein molecules is non-equilibrium and self-similar over thirteen decades in time , 2015, Nature Physics.

[11]  S. Marrink,et al.  From light-harvesting to photoprotection: structural basis of the dynamic switch of the major antenna complex of plants (LHCII) , 2015, Scientific Reports.

[12]  Xavier Andrade,et al.  Insights into colour-tuning of chlorophyll optical response in green plants. , 2015, Physical chemistry chemical physics : PCCP.

[13]  M. Stockett,et al.  The Soret absorption band of isolated chlorophyll a and b tagged with quaternary ammonium ions. , 2015, Physical chemistry chemical physics : PCCP.

[14]  William P. Bricker,et al.  Non-radiative relaxation of photoexcited chlorophylls: theoretical and experimental study , 2015, Scientific Reports.

[15]  Lijin Tian,et al.  Molecular insights into Zeaxanthin-dependent quenching in higher plants , 2015, Scientific Reports.

[16]  Mei Li,et al.  Crystal structures of the PsbS protein essential for photoprotection in plants , 2015, Nature Structural &Molecular Biology.

[17]  M. Zubik,et al.  Is It Beneficial for the Major Photosynthetic Antenna Complex of Plants To Form Trimers? , 2015, The journal of physical chemistry. B.

[18]  Thomas Renger,et al.  Towards an ab initio description of the optical spectra of light-harvesting antennae: application to the CP29 complex of photosystem II. , 2015, Physical chemistry chemical physics : PCCP.

[19]  W. Moerner,et al.  Single-Molecule Identification of Quenched and Unquenched States of LHCII. , 2015, The journal of physical chemistry letters.

[20]  Á. Rubio,et al.  Unraveling the intrinsic color of chlorophyll. , 2015, Angewandte Chemie.

[21]  N. Ioannidis,et al.  Could structural similarity of specific domains between animal globins and plant antenna proteins provide hints important for the photoprotection mechanism? , 2015, Journal of theoretical biology.

[22]  Lei Zhang,et al.  Identification of the roles of individual amino acid residues of the helix E of the major antenna of photosystem II (LHCII) by alanine scanning mutagenesis. , 2014, Journal of biochemistry.

[23]  Matthew P. Johnson,et al.  Disentangling the low-energy states of the major light-harvesting complex of plants and their role in photoprotection. , 2014, Biochimica et biophysica acta.

[24]  C. Robinson,et al.  Membrane proteins bind lipids selectively to modulate their structure and function , 2014, Nature.

[25]  A. Holzwarth,et al.  Charge-transfer character of the low-energy Chl a Q(y) absorption band in aggregated light harvesting complexes II. , 2014, The journal of physical chemistry. B.

[26]  J. Rochaix.  Regulation and dynamics of the light-harvesting system. , 2014, Annual review of plant biology.

[27]  M. Karttunen,et al.  Molecular dynamics simulations of lipid membranes with lateral force: rupture and dynamic properties. , 2014, Biochimica et Biophysica Acta.

[28]  D. Elton,et al.  Polar nanoregions in water: a study of the dielectric properties of TIP4P/2005, TIP4P/2005f and TTM3F. , 2014, The Journal of chemical physics.

[29]  G. Durand,et al.  Regulation of light harvesting in the green alga Chlamydomonas reinhardtii: the C-terminus of LHCSR is the knob of a dimmer switch. , 2013, Journal of the American Chemical Society.

[30]  M. Huang,et al.  Binding of O2 and NO to heme in heme-nitric oxide/oxygen-binding (H-NOX) proteins. A theoretical study. , 2013, The journal of physical chemistry. B.

[31]  Matthew P. Johnson,et al.  The specificity of controlled protein disorder in the photoprotection of plants. , 2013, Biophysical journal.

[32]  John C. Hackett,et al.  Cytochrome P450 compound I in the plane wave pseudopotential framework: GGA electronic and geometric structure of thiolate‐ligated iron(IV)–oxo porphyrin , 2013, J. Comput. Chem..

[33]  B. Cabral,et al.  Born-Oppenheimer molecular dynamics and electronic properties of chlorophyll-c(2) in liquid methanol. , 2013, The Journal of chemical physics.

[34]  K. Niyogi,et al.  Evolution of flexible non-photochemical quenching mechanisms that regulate light harvesting in oxygenic photosynthesis. , 2013, Current opinion in plant biology.

[35]  Tjaart P. J. Krüger,et al.  How Photosynthetic Proteins Switch , 2012 .

[36]  Francesco Luigi Gervasio,et al.  New advances in metadynamics , 2012 .

[37]  R. Croce,et al.  From red to blue to far-red in Lhca4: how does the protein modulate the spectral properties of the pigments? , 2012, Biochimica et biophysica acta.

[38]  R. van Grondelle,et al.  Identification of two emitting sites in the dissipative state of the major light harvesting antenna. , 2012, Physical chemistry chemical physics : PCCP.

[39]  G. Jeschke,et al.  Rigid Core and Flexible Terminus , 2011, The Journal of Biological Chemistry.

[40]  M. Zubik,et al.  Light-induced isomerization of the LHCII-bound xanthophyll neoxanthin: possible implications for photoprotection in plants. , 2011, Biochimica et biophysica acta.

[41]  Mei Li,et al.  Structural insights into energy regulation of light-harvesting complex CP29 from spinach , 2011, Nature Structural &Molecular Biology.

[42]  Harold A Scheraga,et al.  Nonexponential decay of internal rotational correlation functions of native proteins and self-similar structural fluctuations , 2010, Proceedings of the National Academy of Sciences.

[43]  Matthew P. Johnson,et al.  Origin of Absorption Changes Associated with Photoprotective Energy Dissipation in the Absence of Zeaxanthin* , 2010, The Journal of Biological Chemistry.

[44]  G. Fleming,et al.  Quantum coherence and its interplay with protein environments in photosynthetic electronic energy transfer. , 2010, Physical chemistry chemical physics : PCCP.

[45]  A. Holzwarth,et al.  Singlet energy dissipation in the photosystem II light-harvesting complex does not involve energy transfer to carotenoids. , 2010, Chemphyschem : a European journal of chemical physics and physical chemistry.

[46]  F. Bittner,et al.  On the regulation of photosynthesis by excitonic interactions between carotenoids and chlorophylls , 2009, Proceedings of the National Academy of Sciences.

[47]  Matthew P. Johnson,et al.  Photoprotective Energy Dissipation in Higher Plants Involves Alteration of the Excited State Energy of the Emitting Chlorophyll(s) in the Light Harvesting Antenna II (LHCII)* , 2009, The Journal of Biological Chemistry.

[48]  M. Ulmschneider,et al.  United Atom Lipid Parameters for Combination with the Optimized Potentials for Liquid Simulations All-Atom Force Field. , 2009, Journal of chemical theory and computation.

[49]  C. Pace,et al.  Protein Ionizable Groups: pK Values and Their Contribution to Protein Stability and Solubility* , 2009, Journal of Biological Chemistry.

[50]  T. Morosinotto,et al.  Occupancy and Functional Architecture of the Pigment Binding Sites of Photosystem II Antenna Complex Lhcb5* , 2009, Journal of Biological Chemistry.

[51]  H. Paulsen,et al.  The negatively charged amino acids in the lumenal loop influence the pigment binding and conformation of the major light-harvesting chlorophyll a/b complex of photosystem II. , 2008, Biochimica et biophysica acta.

[52]  G. Garab,et al.  Far‐red fluorescence: A direct spectroscopic marker for LHCII oligomer formation in non‐photochemical quenching , 2008, FEBS letters.

[53]  Graham R Fleming,et al.  Architecture of a Charge-Transfer State Regulating Light Harvesting in a Plant Antenna Protein , 2008, Science.

[54]  M. Parrinello,et al.  Well-tempered metadynamics: a smoothly converging and tunable free-energy method. , 2008, Physical review letters.

[55]  J. Kennis,et al.  Identification of a mechanism of photoprotective energy dissipation in higher plants , 2007, Nature.

[56]  Hohjai Lee,et al.  Coherence Dynamics in Photosynthesis: Protein Protection of Excitonic Coherence , 2007, Science.

[57]  Zhenfeng Liu,et al.  Two lutein molecules in LHCII have different conformations and functions: Insights into the molecular mechanism of thermal dissipation in plants. , 2007, Biochemical and biophysical research communications.

[58]  Zaida Luthey-Schulten,et al.  MultiSeq: unifying sequence and structure data for evolutionary analysis , 2006, BMC Bioinformatics.

[59]  A. Elcock.  Molecular Simulations of Cotranslational Protein Folding: Fragment Stabilities, Folding Cooperativity, and Trapping in the Ribosome , 2006, PLoS Comput. Biol..

[60]  Bruno Robert,et al.  Molecular basis of photoprotection and control of photosynthetic light-harvesting , 2005, Nature.

[61]  W. Kühlbrandt,et al.  Mechanisms of photoprotection and nonphotochemical quenching in pea light‐harvesting complex at 2.5 Å resolution , 2005, The EMBO journal.

[62]  Egbert J Boekema,et al.  Supramolecular organization of thylakoid membrane proteins in green plants. , 2005, Biochimica et biophysica acta.

[63]  John Mongan,et al.  Interactive essential dynamics , 2004, J. Comput. Aided Mol. Des..

[64]  Zhenfeng Liu,et al.  Crystal structure of spinach major light-harvesting complex at 2.72 Å resolution , 2004, Nature.

[65]  A. Holzenburg,et al.  Light-induced trimer to monomer transition in the main light-harvesting antenna complex of plants: thermo-optic mechanism. , 2002, Biochemistry.

[66]  L. Nilsson,et al.  Structure and Dynamics of the TIP3P, SPC, and SPC/E Water Models at 298 K , 2001 .

[67]  J. Breton,et al.  The Major Antenna Complex of Photosystem II Has a Xanthophyll Binding Site Not Involved in Light Harvesting* , 2001, The Journal of Biological Chemistry.

[68]  D. Kramer,et al.  How acidic is the lumen? , 1999, Photosynthesis Research.

[69]  A. Young,et al.  Determination of the Stoichiometry and Strength of Binding of Xanthophylls to the Photosystem II Light Harvesting Complexes* , 1999, The Journal of Biological Chemistry.

[70]  Ruban,et al.  The xanthophyll cycle modulates the kinetics of nonphotochemical energy dissipation in isolated light-harvesting complexes, intact chloroplasts, and leaves of spinach , 1999, Plant physiology.

[71]  Yingkai Zhang,et al.  Comment on “Generalized Gradient Approximation Made Simple” , 1998 .

[72]  A. Young,et al.  Dynamics of Xanthophyll-Cycle Activity in Different Antenna Subcomplexes in the Photosynthetic Membranes of Higher Plants (The Relationship between Zeaxanthin Conversion and Nonphotochemical Fluorescence Quenching) , 1997, Plant physiology.

[73]  Burke,et al.  Generalized Gradient Approximation Made Simple. , 1996, Physical review letters.

[74]  P. Horton,et al.  REGULATION OF LIGHT HARVESTING IN GREEN PLANTS. , 1996, Annual review of plant physiology and plant molecular biology.

[75]  K Schulten,et al.  VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.

[76]  P. Horton,et al.  Induction of Nonphotochemical Energy Dissipation and Absorbance Changes in Leaves (Evidence for Changes in the State of the Light-Harvesting System of Photosystem II in Vivo) , 1993, Plant physiology.

[77]  P. Horton,et al.  Regulation of Photosystem II , 1992, Photosynthesis Research.

[78]  Martins,et al.  Efficient pseudopotentials for plane-wave calculations. , 1991, Physical review. B, Condensed matter.

[79]  D. Siefermann-Harms.  Carotenoids in photosynthesis. I: Location in photosynthetic membranes and light-harvesting function , 1985 .

[80]  Leonard Kleinman,et al.  Efficacious Form for Model Pseudopotentials , 1982 .

[81]  Yvonne Koch,et al.  A Primer In Density Functional Theory , 2016 .

[82]  M. Ballottari,et al.  Evolution and functional properties of photosystem II light harvesting complexes in eukaryotes. , 2012, Biochimica et biophysica acta.

[83]  Matthew P. Johnson,et al.  The photoprotective molecular switch in the photosystem II antenna. , 2012, Biochimica et biophysica acta.

[84]  Massimiliano Bonomi,et al.  Metadynamics , 2019, ioChem-BD Computational Chemistry Datasets.

[85]  G. Noctor,et al.  pH dependent chlorophyll fluorescence quenching in spinach thylakoids from light treated or dark adapted leaves , 2004, Photosynthesis Research.