Structure—property modeling of metal binders using molecular fragments

The method of Substructural Molecular Fragments (SMF) based on splitting of a molecular graph into a limited number of topological fragments and calculation of their contributions to a given property was applied to the structure—property modeling of (i) stability constants of the complexes formed by the K+ cation with phosphoryl-containing podands in a mixed THF—CHCl3 solvent, (ii) distribution coefficients for Hg and Pt extraction by podands from water into 1,2-dichloroethane, and (iii) stability constants of complexes of crown ethers with alkali metal cations in methanol. A procedure for the reduction of the number of fragment descriptors in structure—property relationship (QSPR) models based on the Student t-test was proposed. The use of selected variables improves the robustness of the structure—property models.

[1]  Nikolai S. Zefirov,et al.  Fragmental Approach in QSPR , 2002, J. Chem. Inf. Comput. Sci..

[2]  Alexandre Varnek,et al.  Assessment of the Macrocyclic Effect for the Complexation of Crown-Ethers with Alkali Cations Using the Substructural Molecular Fragments Method , 2002, J. Chem. Inf. Comput. Sci..

[3]  Vladimir Poroikov,et al.  Robustness of Biological Activity Spectra Predicting by Computer Program PASS for Noncongeneric Sets of Chemical Compounds , 2000, J. Chem. Inf. Comput. Sci..

[4]  C. S. Matthews,et al.  Relationship of Thermodynamic Properties to.Molecular Structure. Heat Capacities and Heat Contents of Hydrocarbon Vapors. , 1949 .

[5]  Gilles Klopman,et al.  Computer Aided Olive Oil-Gas Partition Coefficient Calculations , 1997, J. Chem. Inf. Comput. Sci..

[6]  Hao Zhu,et al.  Estimation of the Aqueous Solubility of Organic Molecules by the Group Contribution Approach , 2001, J. Chem. Inf. Comput. Sci..

[7]  P. Kollman,et al.  QUANTITATION AND NATURE OF THE MACROCYCLIC EFFECT : K+ COMPLEXATION WITH 18-CROWN-6 AND PENTAGLYME , 1995 .

[8]  S. Anzali,et al.  Discriminating between drugs and nondrugs by prediction of activity spectra for substances (PASS). , 2001, Journal of medicinal chemistry.

[9]  Ronald L. Bruening,et al.  Thermodynamic and kinetic data for macrocycle interactions with cations and anions , 1991 .

[10]  J. D. Lamb,et al.  Thermodynamic and kinetic data for cation-macrocycle interaction , 1985 .

[11]  D. Golden,et al.  Additivity rules for the estimation of thermochemical properties , 1969 .

[12]  Alexandre Varnek,et al.  Anti-HIV Activity of HEPT, TIBO, and Cyclic Urea Derivatives: Structure-Property Studies, Focused Combinatorial Library Generation, and Hits Selection Using Substructural Molecular Fragments Method , 2003, J. Chem. Inf. Comput. Sci..

[13]  R. Hancock,et al.  Factors affecting stabilities of chelate, macrocyclic and macrobicyclic complexes in solution , 1994 .

[14]  Dale W. Margerum,et al.  Macrocyclic effect on the stability of copper(II) tetramine complexes , 1969 .

[15]  R. M. Izatt,et al.  Thermodynamic origin of the macrocyclic effect in crown ether complexes of sodium(1+), potassium(1+), and barium(2+) , 1982 .

[16]  Sergei V. Trepalin,et al.  New Diversity Calculations Algorithms Used for Compound Selection , 2002, J. Chem. Inf. Comput. Sci..

[17]  M. Mavrovouniotis Estimation of standard Gibbs energy changes of biotransformations. , 1991, The Journal of biological chemistry.

[18]  E. Schollmeyer,et al.  The complex formation of non-cyclic polyethers and crown ethers with Ag+ in acetone and propylene carbonate studied by potentiometric and calorimetric methods , 1999 .

[19]  Dan C. Fara,et al.  Quantitative Structure-Property Relationship Modeling of beta-Cyclodextrin Complexation Free Energies , 2004, J. Chem. Inf. Model..

[20]  Alexandre Varnek,et al.  Modeling of Ion Complexation and Extraction Using Substructural Molecular Fragments , 2000, J. Chem. Inf. Comput. Sci..

[21]  Alexandre Varnek,et al.  TOWARDS AN INFORMATION SYSTEM ON SOLVENT EXTRACTION , 2001 .

[22]  G Klopman,et al.  Diversity analysis of 14 156 molecules tested by the National Cancer Institute for anti-HIV activity using the quantitative structure-activity relational expert system MCASE. , 1999, Journal of medicinal chemistry.

[23]  R. Reid,et al.  The Properties of Gases and Liquids , 1977 .

[24]  Tudor I. Oprea,et al.  Three-dimensional quantitative structure-activity relationship of human immunodeficiency virus (I) protease inhibitors. 2. Predictive power using limited exploration of alternate binding modes. , 1994, Journal of medicinal chemistry.

[25]  C. S. Matthews,et al.  Entropy and Heat of Formation of Hydrocarbon Vapors , 1949 .

[26]  A. Turanov,et al.  EXTRACTION OF METAL SPECIES FROM HNO3 SOLUTIONS BY PHOSPHORYL-CONTAINING PODANDS , 1999 .

[27]  G. Ercolani,et al.  Association of alkali and alkaline earth cations with benzo-18-crown-6 and its neutral and negatively charged acyclic analogs in methanol solution , 1981 .