Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver
暂无分享,去创建一个
Brian D. Bennett | Sara A. Grimm | G. Bouffard | Xiaobin Guan | J. McDowell | Morgan Park | D. Morgan | P. Bushel | R. Legaspi | S. Stantripop | B. Bennett | F. Tyson | B. Merrick | John D. Roberts | P. Wade | James W. Thomas | Christina Sison | Holly Coleman | Joel Han | Casandra Montemayor | Karen Schandler | Meghana Vemulapalli | Jennifer C. McDowell | Pamela J. Thomas | Shelise Y. Brooks | Christopher G. Duncan | Alice C. Young | Jim Mullikin | B. Schmidt | Beatrice B. Barnabas | L. Dekhtyar | Nancy L. Riebow | Beatrice B. Gerard G. Shelise Y. Holly Lyudmila Xiaobin Joe Barnabas Bouffard Brooks Coleman Dekhtya | S. Ho | Quino L. Maduro | Catherine A. Masiello | Raymond Smith | Jennifer C Mcdowell | J. Mullikin
[1] S. Mirarab,et al. Sequence Analysis , 2020, Encyclopedia of Bioinformatics and Computational Biology.
[2] D. Waxman,et al. Feminization of Male Mouse Liver by Persistent Growth Hormone Stimulation: Activation of Sex-Biased Transcriptional Networks and Dynamic Changes in Chromatin States , 2017, Molecular and Cellular Biology.
[3] Hadley Wickham,et al. ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .
[4] C. Disteche,et al. Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain , 2017, Proceedings of the National Academy of Sciences.
[5] J. Parsch,et al. Sex-Biased Gene Expression. , 2016, Annual review of genetics.
[6] Howard Y. Chang,et al. Structural organization of the inactive X chromosome in the mouse , 2016, Nature.
[7] Carolyn J. Brown,et al. Escape Artists of the X Chromosome. , 2016, Trends in genetics : TIG.
[8] Hao Wu,et al. Differential methylation analysis for BS-seq data under general experimental design , 2016, Bioinform..
[9] Helene Kretzmer,et al. metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data , 2016, Genome research.
[10] William Stafford Noble,et al. Bipartite structure of the inactive mouse X chromosome , 2015, Genome Biology.
[11] René A. M. Dirks,et al. Dynamics of gene silencing during X inactivation using allele-specific RNA-seq , 2015, Genome Biology.
[12] Erika L. Moen,et al. Characterization of CpG sites that escape methylation on the inactive human X-chromosome , 2015, Epigenetics.
[13] Matthew D. Schultz,et al. Human Body Epigenome Maps Reveal Noncanonical DNA Methylation Variation , 2015, Nature.
[14] William Stafford Noble,et al. Escape from X Inactivation Varies in Mouse Tissues , 2015, PLoS genetics.
[15] Carolyn J. Brown,et al. Landscape of DNA methylation on the X chromosome reflects CpG density, functional chromatin state and X-chromosome inactivation , 2014, Human molecular genetics.
[16] Martin J. Aryee,et al. Coverage recommendations for methylation analysis by whole genome bisulfite sequencing , 2014, Nature Methods.
[17] E. Heard,et al. Noncoding RNAs and epigenetic mechanisms during X-chromosome inactivation. , 2014, Annual review of cell and developmental biology.
[18] Carolyn J. Brown,et al. Variable escape from X-chromosome inactivation: Identifying factors that tip the scales towards expression , 2014, BioEssays : news and reviews in molecular, cellular and developmental biology.
[19] Francis S Collins,et al. Policy: NIH to balance sex in cell and animal studies , 2014, Nature.
[20] L. Doyle,et al. Human active X-specific DNA methylation events showing stability across time and tissues , 2014, European Journal of Human Genetics.
[21] J. Nathans,et al. Cellular Resolution Maps of X Chromosome Inactivation: Implications for Neural Development, Function, and Disease , 2014, Neuron.
[22] V. Catania,et al. Hormonal regulation of hepatic drug biotransformation and transport systems. , 2013, Comprehensive Physiology.
[23] Matthew D. Schultz,et al. Global Epigenomic Reconfiguration During Mammalian Brain Development , 2013, Science.
[24] David J. Waxman,et al. Genome-Wide Analysis of Chromatin States Reveals Distinct Mechanisms of Sex-Dependent Gene Regulation in Male and Female Mouse Liver , 2013, Molecular and Cellular Biology.
[25] Wei Shi,et al. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..
[26] Matthew D. Schultz,et al. 'Leveling' the playing field for analyses of single-base resolution DNA methylomes. , 2012, Trends in genetics : TIG.
[27] Wei Sun,et al. Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation , 2012, Cell.
[28] Philip Cayting,et al. An encyclopedia of mouse DNA elements (Mouse ENCODE) , 2012, Genome Biology.
[29] Peter A. Jones. Functions of DNA methylation: islands, start sites, gene bodies and beyond , 2012, Nature Reviews Genetics.
[30] Hanlin Gao,et al. Transcriptome-Wide Survey of Mouse CNS-Derived Cells Reveals Monoallelic Expression within Novel Gene Families , 2012, PloS one.
[31] Edith Heard,et al. Fifty years of X-inactivation research , 2011, Development.
[32] K. Gunderson,et al. High density DNA methylation array with single CpG site resolution. , 2011, Genomics.
[33] Andrew J Sharp,et al. DNA methylation profiles of human active and inactive X chromosomes. , 2011, Genome research.
[34] W. V. van IJcken,et al. The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA. , 2011, Genes & development.
[35] Elphège P. Nora,et al. Regulation of X-chromosome inactivation by the X-inactivation centre , 2011, Nature Reviews Genetics.
[36] M. Esteller,et al. Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome , 2011, Epigenetics.
[37] Ian M. Wilson,et al. Chromosome-wide DNA methylation analysis predicts human tissue-specific X inactivation , 2011, Human Genetics.
[38] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[39] William N. Venables,et al. Modern Applied Statistics with S , 2010 .
[40] S. Salzberg,et al. NIH Public Access Author Manuscript , 2006 .
[41] J. Shendure,et al. Global survey of escape from X inactivation by RNA-sequencing in mouse. , 2010, Genome research.
[42] Michael P. Snyder,et al. X chromosome-wide analyses of genomic DNA methylation states and gene expression in male and female neutrophils , 2010, Proceedings of the National Academy of Sciences.
[43] Martin J. Aryee,et al. Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts , 2009, Nature Genetics.
[44] R. Maronpot. Biological Basis of Differential Susceptibility to Hepatocarcinogenesis among Mouse Strains , 2009, Journal of toxicologic pathology.
[45] Rafael A. Irizarry,et al. Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores , 2008, Nature Genetics.
[46] Michael B. Stadler,et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome , 2007, Nature Genetics.
[47] A. Chess,et al. Gene Body-Specific Methylation on the Active X Chromosome , 2007, Science.
[48] D. Waxman,et al. Growth hormone regulation of sex-dependent liver gene expression. , 2006, Molecular endocrinology.
[49] C. Disteche,et al. Dosage compensation in mammals: fine-tuning the expression of the X chromosome. , 2006, Genes & development.
[50] J. Rinn,et al. Sexual dimorphism in mammalian gene expression. , 2005, Trends in genetics : TIG.
[51] U. Bunz. How Are Alkynes Scrambled? , 2005, Science.
[52] Daiya Takai,et al. Comprehensive analysis of CpG islands in human chromosomes 21 and 22 , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[53] V. Chapman,et al. Escape from X inactivation of Smcx is preceded by silencing during mouse development , 1998, Nature Genetics.
[54] A. Niveleau,et al. DNA methylation of the X chromosomes of the human female: an in situ semi-quantitative analysis , 1996, Chromosoma.
[55] E. Maestrini,et al. Methylation and sequence analysis around EagI sites: identification of 28 new CpG islands in XQ24-XQ28. , 1992, Nucleic acids research.
[56] T. Mohandas,et al. Reactivation of an inactive human X chromosome: evidence for X inactivation by DNA methylation. , 1981, Science.
[57] R Holliday,et al. DNA modification mechanisms and gene activity during development , 1975, Science.
[58] K. Rao,et al. Development of broad spectrum of tumors by ethylnitrosourea in mice and the modifying role of age, sex, and strain. , 1974, Cancer research.
[59] S. Vesselinovitch. The sex-dependent difference in the development of liver tumors in mice administered dimethylnitrosamine. , 1969, Cancer research.
[60] M. Lyon. Gene Action in the X-chromosome of the Mouse (Mus musculus L.) , 1961, Nature.
[61] W. Gardner,et al. The incidence of spontaneous hepatomas in C3H, C3H (low milk factor), and CBA mice and the effect of estrogen and androgen on the occurrence of these tumors in C3H mice. , 1952, Cancer research.
[62] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[63] M. Waters,et al. How growth hormone controls growth, obesity and sexual dimorphism. , 2008, Trends in genetics : TIG.
[64] A. Bird. DNA methylation patterns and epigenetic memory. , 2002, Genes & development.
[65] Alex E. Lash,et al. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..
[66] P. Jones,et al. The DNA methylation paradox. , 1999, Trends in genetics : TIG.
[67] V. Chapman,et al. Mechanisms of X-chromosome regulation. , 1988, Annual review of genetics.
[68] Arthur D. Riggs,et al. X inactivation, differentiation, and DNA methylation. , 1975, Cytogenetics and cell genetics.