Discrete-State Stochastic Models of Calcium-Regulated Calcium Influx and Subspace Dynamics Are Not Well-Approximated by ODEs That Neglect Concentration Fluctuations
暂无分享,去创建一个
[1] A. Tanskanen,et al. Multiscale Modeling of Calcium Signaling in the Cardiac Dyad , 2006, Annals of the New York Academy of Sciences.
[2] R. Winslow,et al. A computational model of the human left-ventricular epicardial myocyte. , 2004, Biophysical journal.
[3] L. Opresko,et al. Cellular trafficking of phospholamban and formation of functional sarcoplasmic reticulum during myocyte differentiation. , 2007, American journal of physiology. Cell physiology.
[4] Upinder S. Bhalla,et al. Adaptive stochastic-deterministic chemical kinetic simulations , 2004, Bioinform..
[5] T. Chittenden,et al. Bax interacts with the permeability transition pore to induce permeability transition and cytochrome c release in isolated mitochondria. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[6] Ramon Grima,et al. A study of the accuracy of moment-closure approximations for stochastic chemical kinetics. , 2012, The Journal of chemical physics.
[7] M. Huertas,et al. The dynamics of luminal depletion and the stochastic gating of Ca2+-activated Ca2+ channels and release sites. , 2007, Journal of theoretical biology.
[8] P. Kalivas,et al. Computational model of extracellular glutamate in the nucleus accumbens incorporates neuroadaptations by chronic cocaine , 2009, Neuroscience.
[9] Borbala Mazzag,et al. The effect of residual Ca2+ on the stochastic gating of Ca2+-regulated Ca2+ channel models. , 2005, Journal of theoretical biology.
[10] Eric A Sobie,et al. Orphaned ryanodine receptors in the failing heart. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[11] Joseph L Greenstein,et al. Cardiac myocytes and local signaling in nano-domains. , 2011, Progress in biophysics and molecular biology.
[12] B. Sakmann,et al. Single-Channel Recording , 1995, Springer US.
[13] Kevin Burrage,et al. Stochastic approaches for modelling in vivo reactions , 2004, Comput. Biol. Chem..
[14] I. Györke,et al. Regulation of the cardiac ryanodine receptor channel by luminal Ca2+ involves luminal Ca2+ sensing sites. , 1998, Biophysical journal.
[15] Bo Zhang,et al. Network target for screening synergistic drug combinations with application to traditional Chinese medicine , 2011, BMC Systems Biology.
[16] J. Benovic,et al. The role of receptor kinases and arrestins in G protein-coupled receptor regulation. , 1998, Annual review of pharmacology and toxicology.
[17] Qiang Zheng,et al. Comparison of deterministic and stochastic kinetics for nonlinear systems , 1991 .
[18] David T. Yue,et al. Mechanism of Local and Global Ca2+ Sensing by Calmodulin in Complex with a Ca2+ Channel , 2008, Cell.
[19] R. Winslow,et al. An integrative model of the cardiac ventricular myocyte incorporating local control of Ca2+ release. , 2002, Biophysical journal.
[20] Wei Chen,et al. A mathematical model of spontaneous calcium release in cardiac myocytes. , 2011, American journal of physiology. Heart and circulatory physiology.
[21] Yoram Rudy,et al. Local control of β-adrenergic stimulation: Effects on ventricular myocyte electrophysiology and Ca(2+)-transient. , 2011, Journal of molecular and cellular cardiology.
[22] Donald A. McQuarrie,et al. Kinetics of Small Systems. I , 1963 .
[23] Ian J. Laurenzi,et al. An analytical solution of the stochastic master equation for reversible bimolecular reaction kinetics , 2000 .
[24] Stochastic simulation of calcium microdomains in the vicinity of an L-type calcium channel , 2010, European Biophysics Journal.
[25] J. A. Bittencourt. The Equilibrium State , 2004 .
[26] Jie Liang,et al. Computational Cellular Dynamics Based on the Chemical Master Equation: A Challenge for Understanding Complexity , 2010, Journal of Computer Science and Technology.
[27] I. Laurenzi,et al. Kinetics of autocatalysis in small systems. , 2008, The Journal of chemical physics.
[28] Joseph L Greenstein,et al. Role of CaMKII in RyR leak, EC coupling and action potential duration: a computational model. , 2010, Journal of molecular and cellular cardiology.
[29] Eric A Sobie,et al. A probability density approach to modeling local control of calcium-induced calcium release in cardiac myocytes. , 2007, Biophysical journal.
[30] Hong Qian,et al. The Chemical Master Equation Approach to Nonequilibrium Steady-State of Open Biochemical Systems: Linear Single-Molecule Enzyme Kinetics and Nonlinear Biochemical Reaction Networks , 2010, International journal of molecular sciences.
[31] Brani Vidakovic,et al. Constructing stochastic models from deterministic process equations by propensity adjustment , 2011, BMC Systems Biology.
[32] G. Verghese,et al. Mass fluctuation kinetics: capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations. , 2007, The Journal of chemical physics.
[33] Role of the synaptic microenvironment in functional modification of synaptic transmission , 1999, Neurophysiology.
[34] Barry W. Ninham,et al. Stochastic Models for Second‐Order Chemical Reaction Kinetics. The Equilibrium State , 1966 .
[35] Adam Duguid,et al. Stronger Computational Modelling of Signalling Pathways Using Both Continuous and Discrete-State Methods , 2006, CMSB.
[36] Eric A Sobie,et al. Spontaneous Ca2+ sparks and Ca2+ homeostasis in a minimal model of permeabilized ventricular myocytes. , 2010, American journal of physiology. Heart and circulatory physiology.
[37] Glenn Vinnicombe,et al. Noise in Gene Regulatory Networks , 2008, IEEE Transactions on Automatic Control.
[38] W. Rose,et al. Macroscopic and unitary properties of physiological ion flux through T‐type Ca2+ channels in guinea‐pig heart cells. , 1992, The Journal of physiology.
[39] D. T. Yue,et al. Functional Stoichiometry and Local Enrichment of Calmodulin Interacting with Ca2+ Channels , 2004, Science.
[40] D. T. Yue,et al. Unified Mechanisms of Ca2+ Regulation across the Ca2+ Channel Family , 2003, Neuron.
[41] D. Bers. Cardiac excitation–contraction coupling , 2002, Nature.
[42] J. Hell,et al. Regulation of Cardiac L-Type Calcium Channels by Protein Kinase A and Protein Kinase C , 2000, Circulation research.
[43] F. Schlögl,et al. J. Keizer: “Statistical Thermodynamics of Nonequilibrium Processes”, Springer‐Verlag, New York, Berlin, Heidelberg, London, Paris, Tokyo 1987. 506 Seiten, Preis: DM 128,–. , 1989 .
[44] G. Smith,et al. Calcium-dependent inactivation and the dynamics of calcium puffs and sparks. , 2008, Journal of theoretical biology.
[45] Hong Qian,et al. Concentration fluctuations in a mesoscopic oscillating chemical reaction system , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[46] Desmond J. Higham,et al. Modeling and Simulating Chemical Reactions , 2008, SIAM Rev..
[47] Hongli Wang,et al. Master equation analysis of deterministic chemical chaos , 1998 .
[48] H. Qian. Nonlinear stochastic dynamics of mesoscopic homogeneous biochemical reaction systems—an analytical theory , 2011 .
[49] J. Goutsias. Classical versus stochastic kinetics modeling of biochemical reaction systems. , 2007, Biophysical journal.
[50] C. Gadgil. Size-Independent Differences between the Mean of Discrete Stochastic Systems and the Corresponding Continuous Deterministic Systems , 2008, Bulletin of mathematical biology.
[51] M. Cannell,et al. Local control in cardiac E-C coupling. , 2012, Journal of molecular and cellular cardiology.
[52] G. Smith,et al. Ryanodine receptor allosteric coupling and the dynamics of calcium sparks. , 2008, Biophysical journal.
[53] S. Wray,et al. Sarcoplasmic reticulum function in smooth muscle. , 2010, Physiological reviews.
[54] Joel Keizer,et al. Statistical Thermodynamics of Nonequilibrium Processes , 1987 .
[55] Kwang-Hyun Cho,et al. Modeling and simulation of intracellular dynamics: choosing an appropriate framework , 2004, IEEE Transactions on NanoBioscience.