Genome-wide identification and abiotic stress-responsive pattern of heat shock transcription factor family in Triticum aestivum L.

[1]  P. Liu,et al.  Genome-Wide Identification of Cyclic Nucleotide-Gated Ion Channel Gene Family in Wheat and Functional Analyses of TaCNGC14 and TaCNGC16 , 2018, Front. Plant Sci..

[2]  Peer Bork,et al.  20 years of the SMART protein domain annotation resource , 2017, Nucleic Acids Res..

[3]  Xiufang Guo,et al.  Cloning and Characterization of Heat Shock Transcription Factor Gene TaHsfB2d and Its Regulating Role in Thermotolerance , 2018 .

[4]  J. Drenth,et al.  Heat shock factor C2a serves as a proactive mechanism for heat protection in developing grains in wheat via an ABA-mediated regulatory pathway. , 2018, Plant, cell & environment.

[5]  Mingming Xin,et al.  Genetic improvement of heat tolerance in wheat: recent progress in understanding the underlying molecular mechanisms , 2017 .

[6]  Hongfang Liu,et al.  Systematic Analysis of Hsf Family Genes in the Brassica napus Genome Reveals Novel Responses to Heat, Drought and High CO2 Stresses , 2017, Front. Plant Sci..

[7]  Steven L Salzberg,et al.  The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum , 2017, bioRxiv.

[8]  Genome-wide characterization of JASMONATE-ZIM DOMAIN transcription repressors in wheat (Triticum aestivum L.) , 2017, BMC Genomics.

[9]  Pengcheng Li,et al.  Genome-Wide Dissection of the Heat Shock Transcription Factor Family Genes in Arachis , 2017, Frontiers in plant science.

[10]  Ge Gao,et al.  PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants , 2016, Nucleic Acids Res..

[11]  K. Dossa,et al.  Genome-Wide Investigation of Hsf Genes in Sesame Reveals Their Segmental Duplication Expansion and Their Active Role in Drought Stress Response , 2016, Front. Plant Sci..

[12]  Robert P. Davey,et al.  An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations , 2016, bioRxiv.

[13]  Jian‐Kang Zhu.  Abiotic Stress Signaling and Responses in Plants , 2016, Cell.

[14]  Ya-Chen Huang,et al.  The Heat Stress Factor HSFA6b Connects ABA Signaling and ABA-Mediated Heat Responses1[OPEN] , 2016, Plant Physiology.

[15]  Xiaoying Huo,et al.  Identification of miRNAs associated with dark-induced senescence in Arabidopsis , 2015, BMC Plant Biology.

[16]  Mingming Xin,et al.  Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.) , 2015, BMC Plant Biology.

[17]  W. Chai,et al.  Genome-wide analysis, expression profile of heat shock factor gene family (CaHsfs) and characterisation of CaHsfA2 in pepper (Capsicum annuum L.) , 2015, BMC Plant Biology.

[18]  Bo Hu,et al.  GSDS 2.0: an upgraded gene feature visualization server , 2014, Bioinform..

[19]  M. Li,et al.  Genome-wide identification and comparative analysis of the heat shock transcription factor family in Chinese white pear (Pyrus bretschneideri) and five other Rosaceae species , 2015, BMC Plant Biology.

[20]  Weibo Jin,et al.  Characterization of miRNAs associated with Botrytis cinerea infection of tomato leaves , 2015, BMC Plant Biology.

[21]  Youzhi Ma,et al.  Genome-wide analysis of the Hsf family in soybean and functional identification of GmHsf-34 involvement in drought and heat stresses , 2014, BMC Genomics.

[22]  Bao Liu,et al.  Evolution of physiological responses to salt stress in hexaploid wheat , 2014, Proceedings of the National Academy of Sciences.

[23]  K. Jakobsen,et al.  Ancient hybridizations among the ancestral genomes of bread wheat , 2014, Science.

[24]  J. Batley,et al.  A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome , 2014, Science.

[25]  Hui Wang.  Primary nasopharyngeal tuberculosis from China: a case report and literature review , 2014 .

[26]  Mario Pezzotti,et al.  Genome and transcriptome analysis of the grapevine (Vitis vinifera L.) WRKY gene family , 2014, Horticulture Research.

[27]  R. D. Rai,et al.  Can Wheat Beat the Heat: Understanding the Mechanism of Thermotolerance in Wheat (Triticum aestivum L.) , 2014 .

[28]  J. Drenth,et al.  The heat shock factor family from Triticum aestivum in response to heat and other major abiotic stresses and their role in regulation of heat shock protein genes , 2013, Journal of experimental botany.

[29]  Lida Zhang,et al.  Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum) , 2014, BMC Genomics.

[30]  Lindsey J. Leach,et al.  Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat , 2014, BMC Genomics.

[31]  Xiaoping Zhou,et al.  Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice , 2013, Plant Cell Reports.

[32]  D. Salt,et al.  Polyploids Exhibit Higher Potassium Uptake and Salinity Tolerance in Arabidopsis , 2013, Science.

[33]  Y. Charng,et al.  Common and Distinct Functions of Arabidopsis Class A1 and A2 Heat Shock Factors in Diverse Abiotic Stress Responses and Development1[W][OPEN] , 2013, Plant Physiology.

[34]  N. Singh,et al.  DREB1/CBF transcription factors: their structure, function and role in abiotic stress tolerance in plants , 2012, Journal of Genetics.

[35]  J. Hansen,et al.  Perception of climate change , 2012, Proceedings of the National Academy of Sciences.

[36]  B. Mueller‐Roeber,et al.  Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica , 2012, AoB PLANTS.

[37]  Y. Charng,et al.  Acquired thermotolerance independent of heat shock factor A1 (HsfA1), the master regulator of the heat stress response , 2012, Plant signaling & behavior.

[38]  J. Hansen,et al.  Perception of climate change , 2012, Proceedings of the National Academy of Sciences.

[39]  I. Ebersberger,et al.  The plant heat stress transcription factor (Hsf) family: structure, function and evolution. , 2012, Biochimica et biophysica acta.

[40]  K. Shinozaki,et al.  NAC transcription factors in plant abiotic stress responses. , 2012, Biochimica et biophysica acta.

[41]  C. Lata,et al.  Role of DREBs in regulation of abiotic stress responses in plants. , 2011, Journal of experimental botany.

[42]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[43]  K. Shinozaki,et al.  Arabidopsis HsfA1 transcription factors function as the main positive regulators in heat shock-responsive gene expression , 2011, Molecular Genetics and Genomics.

[44]  P. Khurana,et al.  Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress , 2011, Molecular Genetics and Genomics.

[45]  Robert D. Finn,et al.  HMMER web server: interactive sequence similarity searching , 2011, Nucleic Acids Res..

[46]  M. Al-Whaibi.  Plant heat-shock proteins: A mini review , 2011 .

[47]  S. Asseng,et al.  The impact of temperature variability on wheat yields , 2011 .

[48]  Haiyang Jiang,et al.  Genome-wide identification, classification and analysis of heat shock transcription factor family in maize , 2011, BMC Genomics.

[49]  Hongtao Liu,et al.  Progress in the participation of Ca2+–calmodulin in heat shock signal transduction , 2009 .

[50]  Sveta Chakrabarti,et al.  Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses. , 2009, Plant physiology and biochemistry : PPB.

[51]  M. Tomita,et al.  Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs , 2009, Proceedings of the National Academy of Sciences.

[52]  Mikael Bodén,et al.  MEME Suite: tools for motif discovery and searching , 2009, Nucleic Acids Res..

[53]  M. Ohme-Takagi,et al.  A novel group of transcriptional repressors in Arabidopsis. , 2009, Plant & cell physiology.

[54]  Hongtao Liu,et al.  The calmodulin-binding protein kinase 3 is part of heat-shock signal transduction in Arabidopsis thaliana. , 2008, The Plant journal : for cell and molecular biology.

[55]  M. Cronjé,et al.  Modulation of heat shock factors accompanies salicylic acid-mediated potentiation of Hsp70 in tomato seedlings , 2008, Journal of experimental botany.

[56]  K. Yamaguchi,et al.  High-level overexpression of the Arabidopsis HsfA2 gene confers not only increased themotolerance but also salt/osmotic stress tolerance and enhanced callus growth. , 2007, Journal of experimental botany.

[57]  Z. Chen,et al.  Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. , 2007, Annual review of plant biology.

[58]  E. Vierling,et al.  A Novel Transcriptional Cascade Regulating Expression of Heat Stress Proteins during Seed Development of Arabidopsis[W] , 2007, The Plant Cell Online.

[59]  S. K. Baniwal,et al.  Role of Heat Stress Transcription Factor HsfA5 as Specific Repressor of HsfA4* , 2006, Journal of Biological Chemistry.

[60]  Kapil Bharti,et al.  Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors , 2004, Journal of Biosciences.

[61]  Y. Charng,et al.  A Heat-Inducible Transcription Factor, HsfA2, Is Required for Extension of Acquired Thermotolerance in Arabidopsis1[W][OA] , 2006, Plant Physiology.

[62]  R. Mittler,et al.  Could heat shock transcription factors function as hydrogen peroxide sensors in plants? , 2006, Annals of botany.

[63]  D. Inzé,et al.  Transcriptomic Footprints Disclose Specificity of Reactive Oxygen Species Signaling in Arabidopsis1[W] , 2006, Plant Physiology.

[64]  G. Petersen,et al.  Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum). , 2006, Molecular phylogenetics and evolution.

[65]  T. Salem,et al.  Plant class B HSFs inhibit transcription and exhibit affinity for TFIIB and TBP , 2004, Plant Molecular Biology.

[66]  Pascal von Koskull-Döring,et al.  Characterization of C-terminal domains of Arabidopsis heat stress transcription factors (Hsfs) and identification of a new signature combination of plant class A Hsfs with AHA and NES motifs essential for activator function and intracellular localization. , 2004, The Plant journal : for cell and molecular biology.

[67]  Søren Brunak,et al.  Analysis and prediction of leucine-rich nuclear export signals. , 2004, Protein engineering, design & selection : PEDS.

[68]  R. Mittler.  Oxidative stress, antioxidants and stress tolerance. , 2002, Trends in plant science.

[69]  R. Haselkorn,et al.  Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[70]  Andrea Brandolini,et al.  Genetics and geography of wild cereal domestication in the near east , 2002, Nature Reviews Genetics.

[71]  M. Knight,et al.  Protection against Heat Stress-Induced Oxidative Damage in Arabidopsis Involves Calcium, Abscisic Acid, Ethylene, and Salicylic Acid , 2002, Plant Physiology.

[72]  K. Scharf,et al.  Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need? , 2001, Cell stress & chaperones.

[73]  F. Bonzelius,et al.  The Balance of Nuclear Import and Export Determines the Intracellular Distribution and Function of Tomato Heat Stress Transcription Factor HsfA2 , 2001, Molecular and Cellular Biology.

[74]  E. Treuter,et al.  The Role of AHA Motifs in the Activator Function of Tomato Heat Stress Transcription Factors HsfA1 and HsfA2 , 2000, Plant Cell.

[75]  A. Force,et al.  The probability of duplicate gene preservation by subfunctionalization. , 2000, Genetics.

[76]  M. Nicolas,et al.  Effect of Timing of Heat Stress During Grain Filling on Two Wheat Varieties Differing in Heat Tolerance. I. Grain Growth , 1995 .

[77]  J. Celis,et al.  Reference points for comparisons of two‐dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions , 1994, Electrophoresis.

[78]  K. Scharf,et al.  Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA‐binding domain of the yeast HSF. , 1990, The EMBO journal.

[79]  R. Fewster,et al.  The tolerance of wheat to high temperatures during reproductive growth. I. Survey procedures and general response patterns , 1989 .