Macro-level Modeling of the Response of C. elegans Reproduction to Chronic Heat Stress
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Patrick D. McMullen | Erin Z. Aprison | Peter B. Winter | Luis A. N. Amaral | Richard I. Morimoto | Ilya Ruvinsky | L. A. N. Amaral | R. Morimoto | L. Amaral | P. McMullen | I. Ruvinsky | R. Morimoto
[1] L. Mahadevan,et al. On the growth and form of the gut , 2011, Nature.
[2] K. Sachs,et al. Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data , 2005, Science.
[3] T. Schedl. Developmental Genetics of the Germ Line , 1997 .
[4] Aravinthan D. T. Samuel,et al. Calcium dynamics during fertilization in C. elegans , 2001, BMC Developmental Biology.
[5] S. L'Hernault. The genetics and cell biology of spermatogenesis in the nematode C. elegans , 2009, Molecular and Cellular Endocrinology.
[6] Matthew J. Salganik,et al. Experimental Study of Inequality and Unpredictability in an Artificial Cultural Market , 2006, Science.
[7] O. Cinquin,et al. Progression from a stem cell–like state to early differentiation in the C. elegans germ line , 2010, Proceedings of the National Academy of Sciences.
[8] R. Tibshirani,et al. An Introduction to the Bootstrap , 1995 .
[9] H. Horvitz,et al. Mutations in the α1 subunit of an L‐type voltage‐activated Ca2+ channel cause myotonia in Caenorhabditis elegans , 1997, The EMBO journal.
[10] Ken A. Dill,et al. Molecular driving forces : statistical thermodynamics in biology, chemistry, physics, and nanoscience , 2012 .
[11] Jianjun Chen,et al. Facultative Vivipary is a Life-History Trait in Caenorhabditis elegans. , 2004, Journal of nematology.
[12] James R. Knight,et al. Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.
[13] Reza Olfati-Saber,et al. Consensus and Cooperation in Networked Multi-Agent Systems , 2007, Proceedings of the IEEE.
[14] L. Byerly,et al. The life cycle of the nematode Caenorhabditis elegans. I. Wild-type growth and reproduction. , 1976, Developmental biology.
[15] Dana T Byrd,et al. Cellular analyses of the mitotic region in the Caenorhabditis elegans adult germ line. , 2006, Molecular biology of the cell.
[16] D. Black. On the Rationale of Group Decision-making , 1948, Journal of Political Economy.
[17] A. Wayne,et al. Emergence in Physics , 2009 .
[18] H. Morowitz. The Emergence of Everything: How the World Became Complex , 2002 .
[19] S. Tuljapurkar,et al. Delayed reproduction and fitness in variable environments. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[20] H. Horvitz,et al. Egg-laying defective mutants of the nematode Caenorhabditis elegans. , 1983, Genetics.
[21] Michael A. Miller,et al. Eph and NMDA receptors control Ca2+/calmodulin-dependent protein kinase II activation during C. elegans oocyte meiotic maturation , 2005, Development.
[22] I. Ruvinsky,et al. Distinct Functional Constraints Partition Sequence Conservation in a cis-Regulatory Element , 2011, PLoS genetics.
[23] H. Schulenburg,et al. Evolutionary history of Caenorhabditis elegans inferred from microsatellites: evidence for spatial and temporal genetic differentiation and the occurrence of outbreeding. , 2004, Molecular biology and evolution.
[24] A. Fraser,et al. Genetic analysis of tissue aging in Caenorhabditis elegans: a role for heat-shock factor and bacterial proliferation. , 2002, Genetics.
[25] Yoav Benjamini,et al. Identifying differentially expressed genes using false discovery rate controlling procedures , 2003, Bioinform..
[26] P. Kuwabara. The multifaceted C. elegans major sperm protein: an ephrin signaling antagonist in oocyte maturation. , 2003, Genes & development.
[27] Ralph B. D'Agostino,et al. Goodness-of-Fit-Techniques , 2020 .
[28] George Henry Lewes,et al. Problems of life and mind, first series: The foundations of a creed, Vol 2. , 1891 .
[29] Marie-Anne Félix,et al. High Local Genetic Diversity and Low Outcrossing Rate in Caenorhabditis elegans Natural Populations , 2005, Current Biology.
[30] J. McCarter,et al. On the control of oocyte meiotic maturation and ovulation in Caenorhabditis elegans. , 1999, Developmental biology.
[31] S. T. Buckland,et al. An Introduction to the Bootstrap. , 1994 .
[32] Jerome T. Mettetal,et al. Stochastic switching as a survival strategy in fluctuating environments , 2008, Nature Genetics.
[33] A. Singson,et al. Molecular genetic approaches to studying fertilization in model systems. , 2004, Reproduction.
[34] R. Caprioli,et al. A Sperm Cytoskeletal Protein That Signals Oocyte Meiotic Maturation and Ovulation , 2001, Science.
[35] R. W. Rousseau,et al. Elementary principles of chemical processes , 1978 .
[36] W. Deen. Analysis Of Transport Phenomena , 1998 .
[37] H. Horvitz,et al. EGG-LAYING DEFECTIVE MUTANTS OF THE NEMATODE , 1983 .
[38] M. Félix,et al. The natural history of Caenorhabditis elegans , 2010, Current Biology.
[39] K. McDonald,et al. C. elegans sperm bud vesicles to deliver a meiotic maturation signal to distant oocytes , 2005, Development.
[40] J. Kimble,et al. Controls of germline stem cells, entry into meiosis, and the sperm/oocyte decision in Caenorhabditis elegans. , 2007, Annual review of cell and developmental biology.
[41] S. Leibler,et al. Bacterial Persistence as a Phenotypic Switch , 2004, Science.
[42] M. Latterich,et al. GTPase-Mediated Regulation of the Unfolded Protein Response in Caenorhabditis elegans Is Dependent on the AAA+ ATPase CDC-48 , 2008, Molecular and Cellular Biology.
[43] J. Shaffer. Multiple Hypothesis Testing , 1995 .
[44] T. Schedl,et al. Gain-of-function mutations of fem-3, a sex-determination gene in Caenorhabditis elegans. , 1987, Genetics.
[45] Matthew J. Salganik,et al. Web-Based Experiments for the Study of Collective Social Dynamics in Cultural Markets , 2009, Top. Cogn. Sci..
[46] T. Ideker,et al. A new approach to decoding life: systems biology. , 2001, Annual review of genomics and human genetics.
[47] A. Cutter. SPERM‐LIMITED FECUNDITY IN NEMATODES: HOW MANY SPERM ARE ENOUGH? , 2004, Evolution; international journal of organic evolution.
[48] M. Marcello,et al. Fertilization and the oocyte-to-embryo transition in C. elegans. , 2010, BMB reports.
[49] L. Dagdug. Book Review: Molecular Driving Forces: Statistical Thermodynamics in Chemistry and Biology. Ken A. Dill and Sarina Bromberg, Garland Science, New York, 2003 , 2003 .
[50] S. Ward,et al. 7 Germ-line Development and Fertilization , 1988 .
[51] Roy Kishony,et al. Nongenetic Individuality in the Host–Phage Interaction , 2008, PLoS biology.
[52] Nasser M. Nasrabadi,et al. Pattern Recognition and Machine Learning , 2006, Technometrics.
[53] B. Alberts,et al. Isolation of actin‐associated proteins from Caenorhabditis elegans oocytes and their localization in the early embryo , 1997, The EMBO journal.
[54] Edward Ott,et al. Theoretical mechanics: Crowd synchrony on the Millennium Bridge , 2005, Nature.
[55] C. Murphy,et al. Caenorhabditis elegans reproductive aging: Regulation and underlying mechanisms , 2011, Genesis.
[56] Ronald W. Davis,et al. Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray , 1995, Science.
[57] L. Avery,et al. The genetics of feeding in Caenorhabditis elegans. , 1993, Genetics.
[58] G. Kleemann,et al. TGF-β and Insulin Signaling Regulate Reproductive Aging via Oocyte and Germline Quality Maintenance , 2010, Cell.
[59] S. Ward,et al. Fertilization and sperm competition in the nematode Caenorhabditis elegans. , 1979, Developmental biology.
[60] R. Morimoto,et al. Regulation of longevity in Caenorhabditis elegans by heat shock factor and molecular chaperones. , 2003, Molecular biology of the cell.
[61] W. Schafer. Genetics of egg-laying in worms. , 2006, Annual review of genetics.
[62] P. Anderson. More is different. , 1972, Science.
[63] A. Singson,et al. Every sperm is sacred: fertilization in Caenorhabditis elegans. , 2001, Developmental biology.
[64] M. Klass,et al. Development of the reproductive system of Caenorhabditis elegans. , 1976, Developmental biology.
[65] D. Greenstein,et al. Start me up: Cell signaling and the journey from oocyte to embryo in C. elegans , 2006, Developmental dynamics : an official publication of the American Association of Anatomists.
[66] Keith Stowe,et al. An Introduction to Thermodynamics and Statistical Mechanics , 2007 .
[67] Christopher M. Bishop,et al. Pattern Recognition and Machine Learning (Information Science and Statistics) , 2006 .
[68] F. Leroy,et al. Molecular Driving Forces. Statistical Thermodynamics in Biology, Chemistry, Physics, and Nanoscience , 2013 .
[69] D. Hirsh,et al. Temperature-sensitive developmental mutants of Caenorhabditis elegans. , 1976, Developmental biology.
[70] Michael A. Miller. Sperm and oocyte isolation methods for biochemical and proteomic analysis. , 2006, Methods in molecular biology.
[71] Kyung Won Kim,et al. GLD-2/RNP-8 cytoplasmic poly(A) polymerase is a broad-spectrum regulator of the oogenesis program , 2010, Proceedings of the National Academy of Sciences.
[72] R. Morimoto,et al. Regulation of the Cellular Heat Shock Response in Caenorhabditis elegans by Thermosensory Neurons , 2008, Science.
[73] Hilla Peretz,et al. The , 1966 .
[74] S. Hanks,et al. An Eph receptor sperm-sensing control mechanism for oocyte meiotic maturation in Caenorhabditis elegans. , 2003, Genes & development.
[75] T. Starich,et al. Somatic cAMP signaling regulates MSP-dependent oocyte growth and meiotic maturation in C. elegans , 2009, Development.
[76] A. Barabasi,et al. Human disease classification in the postgenomic era: A complex systems approach to human pathobiology , 2007, Molecular systems biology.
[77] M. Fee,et al. Using temperature to analyze temporal dynamics in the songbird motor pathway , 2008, Nature.
[78] Marcus Müller,et al. Coarse‐grained models and collective phenomena in membranes: Computer simulation of membrane fusion , 2003 .
[79] Theodore R Rieger,et al. Mathematical modeling of the eukaryotic heat-shock response: dynamics of the hsp70 promoter. , 2005, Biophysical journal.
[80] John J. Wyrick,et al. Genome-wide location and function of DNA binding proteins. , 2000, Science.
[81] J. Dennis,et al. Eggshell Chitin and Chitin-Interacting Proteins Prevent Polyspermy in C. elegans , 2010, Current Biology.
[82] Pier Luigi Luisi,et al. Emergence in Chemistry: Chemistry as the Embodiment of Emergence , 2002 .
[83] Ronald W. Schafer,et al. A three-state biological point process model and its parameter estimation , 1998, IEEE Trans. Signal Process..
[84] David H. Sharp,et al. Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene , 2006, Nature Genetics.
[85] M. Feder,et al. Natural thermal stress and heat‐shock protein expression in Drosophila larvae and pupae , 1997 .
[86] S. Ward,et al. Developmental genetics of chromosome I spermatogenesis-defective mutants in the nematode Caenorhabditis elegans. , 1988, Genetics.
[87] M. Labouesse. [Caenorhabditis elegans]. , 2003, Medecine sciences : M/S.
[88] J. Hodgkin,et al. More is not better: brood size and population growth in a self-fertilizing nematode , 1991, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[89] M. Félix,et al. Hakuna Nematoda: genetic and phenotypic diversity in African isolates of Caenorhabditis elegans and C. briggsae , 2008, Heredity.
[90] M. Klass,et al. Sperm isolation and biochemical analysis of the major sperm protein from Caenorhabditis elegans. , 1981, Developmental biology.
[91] Robert Tibshirani,et al. An Introduction to the Bootstrap CHAPMAN & HALL/CRC , 1993 .
[92] D. Lauffenburger,et al. Physicochemical modelling of cell signalling pathways , 2006, Nature Cell Biology.
[93] T. Schedl,et al. Sex determination in the germ line. , 2007, WormBook : the online review of C. elegans biology.
[94] N. Munakata. [Genetics of Caenorhabditis elegans]. , 1989, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.
[95] Robert Tibshirani,et al. An Introduction to the Bootstrap , 1994 .