Guiding the self-organization of random Boolean networks
暂无分享,去创建一个
[1] Andrew Wuensche,et al. A model of transcriptional regulatory networks based on biases in the observed regulation rules , 2002, Complex..
[2] M. Aldana. Boolean dynamics of networks with scale-free topology , 2003 .
[3] Albert Y. Zomaya,et al. The Information Dynamics of Phase Transitions in Random Boolean Networks , 2008, ALIFE.
[4] S. Kauffman,et al. Activities and sensitivities in boolean network models. , 2004, Physical review letters.
[5] Viktor Mikhaĭlovich Glushkov,et al. An Introduction to Cybernetics , 1957, The Mathematical Gazette.
[6] Marc Ebner,et al. How neutral networks influence evolvability , 2001, Complex..
[7] Seth Bullock,et al. Spatial embedding and the structure of complex networks , 2010, Complex..
[8] J. Pereira-Leal,et al. Modularity: Understanding the Development and Evolution of Natural Complex Systems , 2006 .
[9] Michael A. Savageau,et al. Effects of alternative connectivity on behavior of randomly constructed Boolean networks , 2002 .
[10] Mikhail Prokopenko,et al. A Fisher Information Study of Phase Transitions in Random Boolean Networks , 2010, ALIFE.
[11] M. Tomassini,et al. Dynamics of Scale-Free Semi-Synchronous Boolean Networks , 2006 .
[12] James P. Crutchfield,et al. Revisiting the Edge of Chaos: Evolving Cellular Automata to Perform Computations , 1993, Complex Syst..
[13] Carlos Gershenson,et al. Modular Random Boolean Networks , 2010, IEEE Symposium on Artificial Life.
[14] F. Taylor. Cybernetics (or control and communication in the animal and the machine). , 1949 .
[15] G. Edelman,et al. Degeneracy and complexity in biological systems , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[16] Carlos Gershenson,et al. Modular Random Boolean Networks1 , 2011, Artificial Life.
[17] Neil Gershenfeld,et al. Information In Dynamics , 1992, Workshop on Physics and Computation.
[18] M. Stern,et al. Emergence of homeostasis and "noise imprinting" in an evolution model. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[19] Julian Francis Miller,et al. Neutrality and the Evolvability of Boolean Function Landscape , 2001, EuroGP.
[20] S. Huang,et al. Shape-dependent control of cell growth, differentiation, and apoptosis: switching between attractors in cell regulatory networks. , 2000, Experimental cell research.
[21] W. Ashby,et al. Principles of the self-organizing dynamic system. , 1947, The Journal of general psychology.
[22] Mikhail Prokopenko,et al. An information-theoretic primer on complexity, self-organization, and emergence , 2009, Complex..
[23] Herbert A. Simon,et al. The Sciences of the Artificial , 1970 .
[24] Axel Bender,et al. Degeneracy: a design principle for achieving robustness and evolvability. , 2009, Journal of theoretical biology.
[25] Luc Steels,et al. Building agents out of autonomous behavior systems , 1995 .
[26] Mikhail Prokopenko,et al. Information Dynamics in Small-World Boolean Networks , 2011, Artificial Life.
[27] Carlos Gershenson,et al. When Can We Call a System Self-Organizing? , 2003, ECAL.
[28] Stefano Nolfi,et al. Emergence of functional modularity in robots , 1998 .
[29] Carsten Peterson,et al. Random Boolean network models and the yeast transcriptional network , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[30] H. Maibom. Social Systems , 2007 .
[31] Fred Keijzer. Artificial Life XI: Proceedings of the eleventh international conference on the simulation and synthesis of living systems , 2008 .
[32] Marco Tomassini,et al. Transient Perturbations on Scale-Free Boolean Networks with Topology Driven Dynamics , 2009, ECAL.
[33] Carlos Gershenson,et al. The Role of Redundancy in the Robustness of Random Boolean Networks , 2005, ArXiv.
[34] P. Cluzel,et al. A natural class of robust networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[35] Guy Theraulaz,et al. Self-Organization in Biological Systems , 2001, Princeton studies in complexity.
[36] V. Isaeva. Self-organization in biological systems , 2012, Biology Bulletin.
[37] Dietrich Stauffer. On forcing functions in Kauffman's random Boolean networks , 1987 .
[38] Carlos Gershenson,et al. Design and Control of Self-organizing Systems , 2007 .
[39] Phil Husbands,et al. Artificial Life IX: Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems , 2004 .
[40] S. Kauffman,et al. Genetic networks with canalyzing Boolean rules are always stable. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[41] Günter P. Wagner,et al. Complex Adaptations and the Evolution of Evolvability , 2005 .
[42] Duncan J. Watts,et al. Collective dynamics of ‘small-world’ networks , 1998, Nature.
[43] Peter V. Coveney,et al. Self-organization: the quest for the origin and evolution of structure. Proceedings of the 2002 Nobel Symposium on self-organization , 2003 .
[44] F. H. Adler. Cybernetics, or Control and Communication in the Animal and the Machine. , 1949 .
[45] Francis Heylighen,et al. The Science of Self-Organization and Adaptivity , 1999 .
[46] T. Jukes,et al. The neutral theory of molecular evolution. , 2000, Genetics.
[47] Andrew Wuensche,et al. Discrete Dynamical Networks and Their Attractor Basins , 1998 .
[48] Erica Jen,et al. Robust design : a repertoire of biological, ecological, and engineering case studies , 2005 .
[49] Alexander Riegler,et al. Natural or Internal Selection? The Case of Canalization in Complex Evolutionary Systems , 2008, Artificial Life.
[50] L. Altenberg,et al. PERSPECTIVE: COMPLEX ADAPTATIONS AND THE EVOLUTION OF EVOLVABILITY , 1996, Evolution; international journal of organic evolution.
[51] Luis Mateus Rocha,et al. The Role of Conceptual Structure in Designing Cellular Automata to Perform Collective Computation , 2008, UC.
[52] A. Wagner. Distributed robustness versus redundancy as causes of mutational robustness. , 2005, BioEssays : news and reviews in molecular, cellular and developmental biology.
[53] Stephen Wolfram,et al. A New Kind of Science , 2003, Artificial Life.
[54] B. Derrida,et al. Random networks of automata: a simple annealed approximation , 1986 .
[55] Christopher G. Langton,et al. Computation at the edge of chaos: Phase transitions and emergent computation , 1990 .
[56] Carlos Gershenson,et al. Updating Schemes in Random Boolean Networks: Do They Really Matter? , 2004, ArXiv.
[57] Diederik Aerts,et al. Contextual Random Boolean Networks , 2003, ECAL.
[58] M. Huynen,et al. Neutral evolution of mutational robustness. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[59] Ricard V. Solé,et al. Neutrality and Robustness in Evo-Devo: Emergence of Lateral Inhibition , 2008, PLoS Comput. Biol..
[60] P. Cluzel,et al. Effects of topology on network evolution , 2006 .
[61] L. Kadanoff,et al. Boolean Dynamics with Random Couplings , 2002, nlin/0204062.
[62] Kasper Stoy,et al. Artificial Life XII Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems , 2010 .
[63] M. Kimura. The Neutral Theory of Molecular Evolution: Introduction , 1983 .
[64] James P. Crutchfield. Critical Computation, Phase Transitions, and Hierarchical Learning , 2001 .
[65] Alan MacLennan,et al. The artificial life route to artificial intelligence: Building embodied, situated agents , 1996 .
[66] Pau Fernandez,et al. The Role of Computation in Complex Regulatory Networks , 2003, q-bio/0311012.
[67] Andrew Wuensche,et al. Classifying cellular automata automatically: Finding gliders, filtering, and relating space-time patterns, attractor basins, and the Z parameter , 1999, Complex..
[68] Marco Villani,et al. On the Dynamics of Scale-Free Boolean Networks , 2003, WIRN.
[69] H. Von Foerster,et al. On Self-Organizing Systems and Their Environments , 2003 .
[70] W. Ross Ashby,et al. Principles of the Self-Organizing System , 1991 .
[71] M. Prokopenko. Guided self‐organization , 2009, HFSP journal.
[72] John Skår,et al. Introduction: Self–organization as an actual theme , 2003, Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences.
[73] S. Kauffman. Metabolic stability and epigenesis in randomly constructed genetic nets. , 1969, Journal of theoretical biology.
[74] John von Neumann,et al. Theory Of Self Reproducing Automata , 1967 .
[75] Mikhail Prokopenko,et al. An information-theoretic primer on complexity, self-organization, and emergence , 2009 .
[76] Diego Rasskin-Gutman,et al. Modularity. Understanding the Development and Evolution of Natural Complex Systems , 2005 .
[77] R. Watson,et al. Optimisation in ‘Self-modelling’ Complex Adaptive Systems , 2011 .
[78] R. Solé,et al. Lyapunov exponents in random Boolean networks , 1999, adap-org/9907001.
[79] Ricard V. Solé,et al. Controlling chaos in random Boolean networks , 1997 .
[80] M Villani,et al. Genetic network models and statistical properties of gene expression data in knock-out experiments. , 2004, Journal of theoretical biology.
[81] B. Drossel,et al. Evolution of canalizing Boolean networks , 2007, q-bio/0701025.
[82] John B Rundle,et al. Self-organized complexity in the physical, biological, and social sciences , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[83] S. Kauffman,et al. Critical Dynamics in Genetic Regulatory Networks: Examples from Four Kingdoms , 2008, PloS one.
[84] Adrian Thompson,et al. Hardware evolution - automatic design of electronic circuits in reconfigurable hardware by artificial evolution , 1999, CPHC/BCS distinguished dissertations.
[85] Carlos Gershenson,et al. Introduction to Random Boolean Networks , 2004, ArXiv.
[86] J. Schnakenberg,et al. G. Nicolis und I. Prigogine: Self‐Organization in Nonequilibrium Systems. From Dissipative Structures to Order through Fluctuations. J. Wiley & Sons, New York, London, Sydney, Toronto 1977. 491 Seiten, Preis: £ 20.–, $ 34.– , 1978 .
[87] Carlos Gershenson,et al. Classification of Random Boolean Networks , 2002, ArXiv.
[88] Ney Lemke,et al. A numerical investigation of adaptation in populations of random boolean networks , 2001 .
[89] Ricard V. Solé,et al. PHASE TRANSITIONS IN RANDOM NETWORKS : SIMPLE ANALYTIC DETERMINATION OF CRITICAL POINTS , 1997 .
[90] Stuart A. Kauffman,et al. ORIGINS OF ORDER , 2019, Origins of Order.
[91] A. Wagner. Robustness and Evolvability in Living Systems , 2005 .
[92] J. S. Andrade,et al. Apollonian networks: simultaneously scale-free, small world, euclidean, space filling, and with matching graphs. , 2005, Physical review letters.