Peptidoglycan as a barrier to transenvelope transport

The bacterial envelope can be considered a combined mechanical and permeability barrier. This duality of function protects the cell against detrimental environmental influences and allows the maintenance of a high internal osmotic pressure. Although these properties imply rigidity, the barrier should also be flexible, permitting morphogenetic changes during growth and division and allowing for transport out of and into the bacterial cell. The mechanical integrity and permeability characteristics of the envelope are usually assigned separately to the two major constituents of the envelope: peptidoglycan is considered to be responsible for the mechanical integrity, whereas the membrane(s) constitute(s) the permeability barrier. Although this functional division is for the most part valid, it overlooks the possible contribution of peptidoglycan to the permeability characteristics of the envelope. For gram-positive bacteria, this issue was discussed in some early studies (30, 88), and the fact that the multilayered peptidoglycan, with its high degree of cross-linking and the presence of teichoic acids, might act as a permeability barrier is also the key feature of the recently proposed concept of gram-positive periplasm (68). For gram-negative bacteria, on the other hand, the permeability characteristics of peptidoglycan were overshadowed by those of the outer membrane (72). In fact, whereas low-molecular-weight compounds probably diffuse readily through peptidoglycan, the size of its pores may well be a limiting factor for the passage of larger proteins and protein complexes. In particular, the penetration of peptidoglycan by large multisubunit protein complexes that span the entire envelope may pose considerable steric problems. The presence of these envelopespanning structures has been demonstrated or postulated for a variety of transfer processes such as the secretion of toxins, the assembly of flagella and fimbriae, conjugation, and transformation. However, when the putative structure or function of these large multiprotein transfer machineries is described, the issue of peptidoglycan penetration is not usually taken into consideration. This is illustrated by the failure to depict the peptidoglycan layer in several schematic representations of these large putative envelope-spanning structures. The presence of peptidoglycan pores large enough to accommodate these structures is often taken for granted. On the other hand, some indirect evidence has led to speculation about possible peptidoglycan rearrangements during the assembly of these structures or during the actual transfer process (19, 26, 27, 36, 66). This minireview takes this speculation further by looking at the phenomenon of envelope spanning from a dimensional perspective: we focus on the correlation between the structural and functional features of peptidoglycan and the envelopespanning protein complexes. The observed dimensional discrepancies, combined with an examination of the reported links between the assembly of envelope-spanning complexes and peptidoglycan metabolism, strongly suggest the involvement of specific peptidoglycan-processing enzymes in this assembly. This hypothesis is supported by the recent identification of peptidoglycan hydrolase homologs in several crossenvelope transfer systems.

[1]  P. J. Butler Filamentous phage assembly , 1976, Nature.

[2]  D. Karamata,et al.  Genetic analysis of autolysin-deficient and flagellaless mutants of Bacillus subtilis , 1984, Journal of bacteriology.

[3]  G. Högenauer,et al.  The sequence of the leading region of the resistance plasmid R1. , 1990, Nucleic acids research.

[4]  E. Koonin,et al.  A family of lysozyme-like virulence factors in bacterial pathogens of plants and animals. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[5]  R. C. Ferreira,et al.  Plasmid regulation and temperature-sensitive behavior of the Yersinia pestis penicillin-binding proteins , 1994, Infection and immunity.

[6]  G. Salmond,et al.  Membrane traffic wardens and protein secretion in gram-negative bacteria. , 1993, Trends in biochemical sciences.

[7]  H. Labischinski,et al.  Chapter 2 Bacterial peptidoglycan: overview and evolving concepts , 1994 .

[8]  C. Kado Promiscuous DNA transfer system of Agrobacterium tumefaciens: role of the virB operon in sex pilus assembly and synthesis , 1994, Molecular microbiology.

[9]  B. Hohn,et al.  Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: analogy to bacterial conjugation. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[10]  D. Dubnau,et al.  comF, a Bacillus subtilis late competence locus, encodes a protein similar to ATP‐dependent RNA/DNA helicases , 1993, Molecular microbiology.

[11]  R. Schilperoort,et al.  Conjugative Transfer by the Virulence System of Agrobacterium tumefaciens , 1992, Science.

[12]  T. Nakae,et al.  Outer membrane as a diffusion barrier in Salmonella typhimurium. Penetration of oligo- and polysaccharides into isolated outer membrane vesicles and cells with degraded peptidoglycan layer. , 1975, The Journal of biological chemistry.

[13]  E. Minkley,et al.  DNA transfer occurs during a cell surface contact stage of F sex factor-mediated bacterial conjugation , 1985, Journal of bacteriology.

[14]  A. Pugsley,et al.  The general secretory pathway of Klebsiella oxytoca: no evidence for relocalization or assembly of pilin‐like PulG protein into a multiprotein complex , 1993, Molecular microbiology.

[15]  Christopher M Thomas,et al.  Conjugative transfer functions of broad‐host‐range plasmid RK2 are coregulated with vegetative replication , 1992, Molecular microbiology.

[16]  C. Rees,et al.  Transfer of tra proteins into the recipient cell during bacterial conjugation mediated by plasmid ColIb-P9 , 1989, Journal of bacteriology.

[17]  A. L. Koch,et al.  The permeability of the wall fabric of Escherichia coli and Bacillus subtilis , 1996, Journal of bacteriology.

[18]  A. Pugsley Translocation of a folded protein across the outer membrane in Escherichia coli. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[19]  M. Bayer,et al.  Zones of membrane adhesion in the cryofixed envelope of Escherichia coli. , 1991, Journal of structural biology.

[20]  E. Kellenberger The ‘Bayer bridges’ confronted with results from improved electron microscopy methods , 1990, Molecular microbiology.

[21]  R. Rappuoli,et al.  Pertussis toxin export requires accessory genes located downstream from the pertussis toxin operon , 1993, Molecular microbiology.

[22]  R. Skurray,et al.  Genetic Organization of Transfer-Related Determinants on the Sex Factor F and Related Plasmids , 1993 .

[23]  G. Shockman Microbial peptidoglycan (murein) hydrolases , 1994 .

[24]  G. Koraimann,et al.  Expression of gene 19 of the conjugative plasmid R1 is controlled by RNase III , 1993, Molecular microbiology.

[25]  N H Mendelson,et al.  Mechanical behaviour of bacterial cell walls. , 1991, Advances in microbial physiology.

[26]  J. Dubochet,et al.  X-ray diffraction and electron microscope studies on the structure of bacterial F pili. , 1979, Journal of molecular biology.

[27]  J. Tomb,et al.  Nucleotide sequence of a cluster of genes involved in the transformation of Haemophilus influenzae Rd. , 1991, Gene.

[28]  J. Fein Possible involvement of bacterial autolytic enzymes in flagellar morphogenesis , 1979, Journal of bacteriology.

[29]  R. Macnab,et al.  FlgB, FlgC, FlgF and FlgG. A family of structurally related proteins in the flagellar basal body of Salmonella typhimurium. , 1990, Journal of molecular biology.

[30]  J. Fein,et al.  Autolytic enzyme-deficient mutants of Bacillus subtilis 168 , 1976, Journal of bacteriology.

[31]  M. Lessl,et al.  Sequence similarities between the RP4 Tra2 and the Ti VirB region strongly support the conjugation model for T-DNA transfer. , 1992, The Journal of biological chemistry.

[32]  R. Hakenbeck,et al.  A two‐component signal‐transducing system is involved in competence and penicillin susceptibility in laboratory mutants of Streptococcus pneumoniae , 1994, Molecular microbiology.

[33]  M. Foley,et al.  Lateral diffusion of proteins in the periplasm of Escherichia coli , 1986, Journal of bacteriology.

[34]  R. Ménard,et al.  Characterization of the Shigella flexneri ipgD and ipgF genes, which are located in the proximal part of the mxi locus , 1993, Infection and immunity.

[35]  J. Mattick,et al.  Characterization of a five‐cluster required for the biogenesis of type 4 fimbriae in Pseudomonas aeruginosa , 1995, Molecular microbiology.

[36]  R. Macnab,et al.  Image reconstruction of the flagellar basal body of Salmonella typhimurium. , 1989, Journal of molecular biology.

[37]  H. Mobley,et al.  Genetic organization and complete sequence of the Proteus mirabilis pmf fimbrial operon. , 1994, Gene.

[38]  B. Dijkstra,et al.  'Holy' proteins. II: The soluble lytic transglycosylase. , 1994, Current opinion in structural biology.

[39]  P. Christie,et al.  Genetic complementation analysis of the Agrobacterium tumefaciens virB operon: virB2 through virB11 are essential virulence genes , 1994, Journal of bacteriology.

[40]  Y. Thorstenson,et al.  Subcellular localization of seven VirB proteins of Agrobacterium tumefaciens: implications for the formation of a T-DNA transport structure , 1993, Journal of bacteriology.

[41]  F. D. Johnson,et al.  Molecular characterization of an operon required for pertussis toxin secretion. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[42]  B. Manners,et al.  Deformations in the cytoplasmic membrane of Escherichia coli direct the synthesis of peptidoglycan. The hernia model. , 1993, Biophysical journal.

[43]  E. Kellenberger,et al.  Periplasmic Gel: New Concept Resulting from the Reinvestigation of Bacterial Cell Envelope Ultrastructure by New Methods , 1985, Journal of bacteriology.

[44]  S. Deb,et al.  Isolation of differentiated membrane domains from Escherichia coli and Salmonella typhimurium, including a fraction containing attachment sites between the inner and outer membranes and the murein skeleton of the cell envelope. , 1986, The Journal of biological chemistry.

[45]  U. Schwarz,et al.  Novel type of murein transglycosylase in Escherichia coli , 1975, Journal of bacteriology.

[46]  D. Karamata,et al.  A periplasm in Bacillus subtilis , 1995, Journal of bacteriology.

[47]  M. Lessl,et al.  Common mechanisms in bacterial conjugation and Ti-mediated T-DNA transfer to plant cells , 1994, Cell.

[48]  G. Venema,et al.  Molecular cloning and nucleotide sequence of the gene encoding the major peptidoglycan hydrolase of Lactococcus lactis, a muramidase needed for cell separation , 1995, Journal of bacteriology.

[49]  R. Eferl,et al.  Gene 19 of plasmid R1 is required for both efficient conjugative DNA transfer and bacteriophage R17 infection , 1995, Journal of bacteriology.

[50]  J. Paton,et al.  Contribution of autolysin to virulence of Streptococcus pneumoniae , 1989, Infection and immunity.

[51]  D. Ayusawa,et al.  Pleiotropic phenomena in autolytic enzyme(s) content, flagellation, and simultaneous hyperproduction of extracellular alpha-amylase and protease in a Bacillus subtilis mutant , 1975, Journal of bacteriology.

[52]  L. Frost,et al.  Analysis of the sequence and gene products of the transfer region of the F sex factor , 1994, Microbiological reviews.

[53]  G. Barnickel,et al.  On the secondary and tertiary structure of murein. Low and medium-angle X-ray evidence against chitin-based conformations of bacterial peptidoglycan. , 1979, European journal of biochemistry.

[54]  K. Namba,et al.  Morphological pathway of flagellar assembly in Salmonella typhimurium. , 1992, Journal of molecular biology.

[55]  Matthew Hobbs,et al.  Common components in the assembly of type 4 fimbriae, DNA transfer systems, filamentous phage and protein‐secretion apparatus: a general system for the formation of surface‐associated protein complexes , 1993, Molecular microbiology.

[56]  U. Schwarz,et al.  The composition of the murein of Escherichia coli. , 1988, The Journal of biological chemistry.

[57]  M. Popoff,et al.  Nucleotide sequence of iagA and iagB genes involved in invasion of HeLa cells by Salmonella enterica subsp. enterica ser. Typhi. , 1995, Research in microbiology.

[58]  W. H. Elliott,et al.  Release of extracellular enzymes from Bacillus amyloliquefaciens , 1975, Journal of bacteriology.

[59]  D. Dubnau,et al.  Genetic competence in Bacillus subtilis. , 1991, Microbiological reviews.

[60]  D. Karamata,et al.  Sequencing and analysis of the Bacillus subtilis lytRABC divergon: a regulatory unit encompassing the structural genes of the N-acetylmuramoyl-L-alanine amidase and its modifier. , 1992, Journal of general microbiology.

[61]  J. Ward,et al.  Deficiency of autolytic activity in Bacillus subtilis and Streptococcus pneumoniae is associated with a decreased permeability of the wall. , 1981, Journal of general microbiology.

[62]  S. C. Winans,et al.  Common ancestry between IncN conjugal transfer genes and macromolecular export systems of plant and animal pathogens , 1994, Molecular microbiology.

[63]  C. Ginocchio,et al.  Contact with epithelial cells induces the formation of surface appendages on Salmonella typhimurium , 1994, Cell.

[64]  J. Holmgren,et al.  Conformation of protein secreted across bacterial outer membranes: a study of enterotoxin translocation from Vibrio cholerae. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[65]  M. Fussenegger,et al.  Tetrapac (tpc), a novel genotype of Neisseria gonorrhoeae affecting epithelial cell invasion, natural transformation competence and cell separation , 1996, Molecular microbiology.

[66]  C. Boucher,et al.  Conservation of secretion pathways for pathogenicity determinants of plant and animal bacteria. , 1993, Trends in microbiology.

[67]  J. Höltje “Three for one” — a Simple Growth Mechanism that Guarantees a Precise Copy of the Thin, Rod-Shaped Murein Sacculus of Escherichia coli , 1993 .

[68]  M. Russel Phage assembly: a paradigm for bacterial virulence factor export? , 1994, Science.

[69]  K. H. Kalk,et al.  Doughnut-shaped structure of a bacterial muramidase revealed by X-ray crystallography , 1994, Nature.

[70]  D. Marvin,et al.  Structure of polar pili from Pseudomonas aeruginosa strains K and O. , 1981, Journal of molecular biology.

[71]  K. Shirasu,et al.  Membrane location of the Ti plasmid VirB proteins involved in the biosynthesis of a pilin-like conjugative structure on Agrobacterium tumefaciens. , 1993, FEMS microbiology letters.

[72]  A. L. Koch,et al.  Elasticity of the sacculus of Escherichia coli , 1992, Journal of bacteriology.

[73]  J. Mattick,et al.  Characterisation of a Pseudomonas aeruginosa twitching motility gene and evidence for a specialised protein export system widespread in eubacteria. , 1991, Gene.

[74]  K. Finberg,et al.  Interactions of VirB9, -10, and -11 with the membrane fraction of Agrobacterium tumefaciens: solubility studies provide evidence for tight associations , 1995, Journal of bacteriology.

[75]  J. Sekiguchi,et al.  Nucleotide sequences of the Bacillus subtilis flaD locus and a B. licheniformis homologue affecting the autolysin level and flagellation. , 1990, Journal of general microbiology.

[76]  A. Plucienniczak,et al.  Nucleotide sequence of a cluster of early and late genes in a conserved segment of the vaccinia virus genome. , 1985, Nucleic acids research.

[77]  C. Woldringh Significance of plasmolysis spaces as markers periseptal annuli and adhesion sites , 1994, Molecular microbiology.

[78]  W. Keck,et al.  Identification of new members of the lytic transglycosylase family in Haemophilus influenzae and Escherichia coli. , 1996, Microbial drug resistance.

[79]  E. Koonin,et al.  A conserved domain in putative bacterial and bacteriophage transglycosylases. , 1994, Trends in biochemical sciences.

[80]  A. Pugsley,et al.  Two distinct steps in pullulanase secretion by Escherichia coli K12 , 1991, Molecular microbiology.

[81]  C. Jones,et al.  The bacterial flagellum and flagellar motor: structure, assembly and function. , 1991, Advances in microbial physiology.

[82]  G. Cornelis,et al.  Analysis of virC, an operon involved in the secretion of Yop proteins by Yersinia enterocolitica , 1991, Journal of bacteriology.

[83]  P. Gerhardt,et al.  Molecular Sieving by the Bacillus megaterium Cell Wall and Protoplast , 1971, Journal of bacteriology.

[84]  J. M. Ranhand Autolytic Activity and Its Association with the Development of Competence in Group H Streptococci , 1973, Journal of bacteriology.

[85]  T. Bächi,et al.  Conjugational junctions: morphology of specific contacts in conjugating Escherichia coli bacteria. , 1991, Journal of structural biology.

[86]  J. Ghuysen,et al.  Modular design of the Enterococcus hirae muramidase-2 and Streptococcus faecalis autolysin. , 1992, FEMS microbiology letters.

[87]  A. L. Koch The surface stress theory for the case of Escherichia coli: the paradoxes of gram-negative growth. , 1990, Research in microbiology.

[88]  R M Macnab,et al.  Genetics and biogenesis of bacterial flagella. , 1992, Annual review of genetics.

[89]  R. Macnab,et al.  L-, P-, and M-ring proteins of the flagellar basal body of Salmonella typhimurium: gene sequences and deduced protein sequences , 1989, Journal of bacteriology.

[90]  A. Pugsley The complete general secretory pathway in gram-negative bacteria. , 1993, Microbiological reviews.

[91]  M. Saier,et al.  Two novel families of bacterial membrane proteins concerned with nodulation, cell division and transport , 1994, Molecular microbiology.

[92]  D. Dubnau,et al.  Cloning and characterization of the regulatory Bacillus subtilis competence genes comA and comB , 1989, Journal of bacteriology.

[93]  R. Kolter,et al.  ABC transporters: bacterial exporters , 1993, Microbiological reviews.

[94]  M. Fussenegger,et al.  A novel peptidoglycan‐linked lipoprotein (ComL) that functions in natural transformation competence of Neisseria gonorrhoeae , 1996, Molecular microbiology.

[95]  R. Macnab,et al.  Genetic and biochemical analysis of Salmonella typhimurium FliI, a flagellar protein related to the catalytic subunit of the F0F1 ATPase and to virulence proteins of mammalian and plant pathogens , 1993, Journal of bacteriology.

[96]  J. Brass The cell envelope of gram-negative bacteria: new aspects of its function in transport and chemotaxis. , 1986, Current topics in microbiology and immunology.

[97]  J. Strominger,et al.  AUTOLYSIS OF CELL WALLS OF BACILLUS SUBTILIS. MECHANISM AND POSSIBLE RELATIONSHIP TO COMPETENCE. , 1964, The Journal of biological chemistry.

[98]  D. Burns,et al.  Detection and subcellular localization of three Ptl proteins involved in the secretion of pertussis toxin from Bordetella pertussis , 1994, Journal of bacteriology.

[99]  H. Labischinski,et al.  Direct proof of a "more-than-single-layered" peptidoglycan architecture of Escherichia coli W7: a neutron small-angle scattering study , 1991, Journal of bacteriology.

[100]  B. Fee,et al.  Nucleotide sequence of gene X of antibiotic resistance plasmid R100. , 1988, Nucleic acids research.