A minimal proteinlike lattice model: an alpha-helix motif.
暂无分享,去创建一个
[1] Scott Brown,et al. Coarse-grained sequences for protein folding and design , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[2] M. Karplus,et al. Kinetics of protein folding. A lattice model study of the requirements for folding to the native state. , 1994, Journal of molecular biology.
[3] J. Onuchic,et al. The energy landscape theory of protein folding: insights into folding mechanisms and scenarios. , 2000, Advances in protein chemistry.
[4] Hue Sun Chan,et al. History-dependent phenomena in the transverse Ising ferroglass: The free-energy landscape , 2000 .
[5] M. Karplus,et al. How does a protein fold? , 1994, Nature.
[6] D. Thirumalai,et al. Metastability of the folded states of globular proteins. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[7] J. Skolnick,et al. A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native state. , 2003, Biophysical journal.
[8] Harold A. Scheraga,et al. Statistical Thermodynamics of Protein Folding: Comparison of a Mean-Field Theory with Monte Carlo Simulations , 1994 .
[9] D. Thirumalai,et al. Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein. , 1996, Journal of molecular biology.
[10] T. Head-Gordon,et al. Minimalist models for protein folding and design. , 2003, Current opinion in structural biology.
[11] J. Onuchic,et al. Folding kinetics of proteinlike heteropolymers , 1994, cond-mat/9404001.
[12] J. Sorenson,et al. Redesigning the hydrophobic core of a model β‐sheet protein: Destabilizing traps through a threading approach , 1999, Proteins.
[13] D. Thirumalai,et al. Deciphering the timescales and mechanisms of protein folding using minimal off-lattice models. , 1999, Current opinion in structural biology.
[14] Lorna J. Smith,et al. Understanding protein folding via free-energy surfaces from theory and experiment. , 2000, Trends in biochemical sciences.
[15] C. Branden,et al. Introduction to protein structure , 1991 .
[16] D. Raleigh,et al. A de Novo Designed Protein Mimics the Native State of Natural Proteins , 1995 .
[17] J. Skolnick,et al. Reduced models of proteins and their applications , 2004 .
[18] W. DeGrado,et al. Design of a 4-helix bundle protein: synthesis of peptides which self-associate into a helical protein , 1987 .
[19] H. Chan,et al. Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: how adequate is native-centric topological modeling? , 2002, Journal of molecular biology.
[20] U H Hansmann,et al. New Monte Carlo algorithms for protein folding. , 1999, Current opinion in structural biology.
[21] Gerard T. Barkema,et al. Monte Carlo Methods in Statistical Physics , 1999 .
[22] C. Anfinsen. Principles that govern the folding of protein chains. , 1973, Science.
[23] D. Yee,et al. Principles of protein folding — A perspective from simple exact models , 1995, Protein science : a publication of the Protein Society.
[24] Seishi Shimizu,et al. Cooperativity principles in protein folding. , 2004, Methods in enzymology.
[25] J. Skolnick,et al. Dynamic Monte Carlo study of the folding of a six-stranded Greek key globular protein. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[26] A Kolinski,et al. Dynamic Monte Carlo simulations of a new lattice model of globular protein folding, structure and dynamics. , 1991, Journal of molecular biology.
[27] A. Kolinski. Protein modeling and structure prediction with a reduced representation. , 2004, Acta biochimica Polonica.
[28] M. Hao,et al. Molecular mechanisms for cooperative folding of proteins. , 1998, Journal of molecular biology.
[29] M Karplus,et al. The folding mechanism of larger model proteins: role of native structure. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[30] Andrzej Kloczkowski,et al. Inferring ideal amino acid interaction forms from statistical protein contact potentials , 2005, Proteins.
[31] J Skolnick,et al. Monte Carlo simulation of equilibrium globular protein folding: alpha-helical bundles with long loops. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[32] Teresa Head-Gordon,et al. Matching simulation and experiment (extended abstract): a new simplified model for simulating protein folding , 2000, RECOMB '00.