Transcriptome profiling reveals significant changes in the gastric muscularis externa with obesity that partially overlap those that occur with idiopathic gastroparesis

[1]  Asha A. Nair,et al.  Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis , 2018, BMC Medical Genomics.

[2]  A. Nakeeb,et al.  Idiopathic gastroparesis is associated with specific transcriptional changes in the gastric muscularis externa , 2018, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[3]  H. Parkman,et al.  Gastric neuromuscular histology in patients with refractory gastroparesis: Relationships to etiology, gastric emptying, and response to gastric electric stimulation , 2017, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[4]  Måns Magnusson,et al.  MultiQC: summarize analysis results for multiple tools and samples in a single report , 2016, Bioinform..

[5]  G. Farrugia,et al.  Diabetic Csf1op/op Mice Lacking Macrophages Are Protected Against the Development of Delayed Gastric Emptying , 2015, Cellular and Molecular Gastroenterology and Hepatology.

[6]  A. Zinsmeister,et al.  Quantitative gastrointestinal and psychological traits associated with obesity and response to weight-loss therapy. , 2015, Gastroenterology.

[7]  G. Farrugia,et al.  Macrophages in diabetic gastroparesis – the missing link? , 2015, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[8]  H. Parkman,et al.  Association of low numbers of CD206‐positive cells with loss of ICC in the gastric body of patients with diabetic gastroparesis , 2014, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[9]  M. Blennerhassett,et al.  Inflammatory cytokines promote growth of intestinal smooth muscle cells by induced expression of PDGF-Rβ , 2014, Journal of cellular and molecular medicine.

[10]  S. Ward,et al.  Distribution and Ca2+ signalling of fibroblast‐like (PDGFRα+) cells in the murine gastric fundus , 2013, The Journal of physiology.

[11]  S. Srinivasan,et al.  Effect of high fat-diet and obesity on gastrointestinal motility. , 2013, Annals of translational medicine.

[12]  Wei Shi,et al.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..

[13]  B. Bhetwal,et al.  Impaired contractile responses and altered expression and phosphorylation of Ca2+ sensitization proteins in gastric antrum smooth muscles from ob/ob mice , 2013, Journal of Muscle Research and Cell Motility.

[14]  Yunlong Liu,et al.  NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets , 2013, Bioinform..

[15]  P. Pasricha,et al.  Platelet‐derived growth factor receptor α (PDGFRα)‐expressing “fibroblast‐like cells” in diabetic and idiopathic gastroparesis of humans , 2012, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[16]  P. Pasricha,et al.  Ultrastructural differences between diabetic and idiopathic gastroparesis , 2012, Journal of cellular and molecular medicine.

[17]  P. Pasricha,et al.  Clinical‐histological associations in gastroparesis: results from the Gastroparesis Clinical Research Consortium , 2012, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[18]  Davis J. McCarthy,et al.  Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation , 2012, Nucleic acids research.

[19]  A. Zinsmeister,et al.  Prevalence of Hidden Gastroparesis in the Community: The Gastroparesis "Iceberg" , 2012, Journal of neurogastroenterology and motility.

[20]  P. Pasricha,et al.  Cellular changes in diabetic and idiopathic gastroparesis. , 2011, Gastroenterology.

[21]  G. Farrugia,et al.  CD206-positive M2 macrophages that express heme oxygenase-1 protect against diabetic gastroparesis in mice. , 2010, Gastroenterology.

[22]  P. Mueller,et al.  Genetic variants associated with fasting blood lipids in the U.S. population: Third National Health and Nutrition Examination Survey , 2010, BMC Medical Genetics.

[23]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[24]  Hye-Kyung Jung,et al.  Incidence , Prevalence , and Outcomes of Patients With Gastroparesis n Olmsted County , Minnesota , From 1996 to 2006 , 2022 .

[25]  M. Camilleri,et al.  Consensus Recommendations for Gastric Emptying Scintigraphy: A Joint Report of the American Neurogastroenterology and Motility Society and the Society of Nuclear Medicine , 2008, Journal of Nuclear Medicine Technology.

[26]  S. Ward,et al.  Physiology and pathophysiology of the interstitial cell of Cajal: from bench to bedside. I. Functional development and plasticity of interstitial cells of Cajal networks. , 2001, American journal of physiology. Gastrointestinal and liver physiology.

[27]  J. Huizinga,et al.  Assessment of gastric emptying using a low fat meal: establishment of international control values , 2000, American Journal of Gastroenterology.

[28]  S. Ward,et al.  Interstitial cells of Cajal generate electrical slow waves in the murine stomach , 1999, The Journal of physiology.

[29]  K. Sanders.  A case for interstitial cells of Cajal as pacemakers and mediators of neurotransmission in the gastrointestinal tract. , 1996, Gastroenterology.

[30]  Ash A. Alizadeh,et al.  Profiling Tumor Infiltrating Immune Cells with CIBERSORT. , 2018, Methods in molecular biology.

[31]  Thomas R. Gingeras,et al.  STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..

[32]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..