Structural basis for the hijacking of endosomal sorting nexin proteins by Chlamydia trachomatis

During infection chlamydial pathogens form an intracellular membrane-bound replicative niche termed the inclusion, which is enriched with bacterial transmembrane proteins called Incs. Incs bind and manipulate host cell proteins to promote inclusion expansion and provide camouflage against innate immune responses. Sorting nexin (SNX) proteins that normally function in endosomal membrane trafficking are a major class of inclusion-associated host proteins, and are recruited by IncE/CT116. Crystal structures of the SNX5 phox-homology (PX) domain in complex with IncE define the precise molecular basis for these interactions. The binding site is unique to SNX5 and related family members SNX6 and SNX32. Intriguingly the site is also conserved in SNX5 homologues throughout evolution, suggesting that IncE captures SNX5-related proteins by mimicking a native host protein interaction. These findings thus provide the first mechanistic insights both into how chlamydial Incs hijack host proteins, and how SNX5-related PX domains function as scaffolds in protein complex assembly. DOI: http://dx.doi.org/10.7554/eLife.22311.001

[1]  D. Pim,et al.  Interaction of the Human Papillomavirus E6 Oncoprotein with Sorting Nexin 27 Modulates Endocytic Cargo Transport Pathways , 2016, PLoS pathogens.

[2]  H. Hilbi,et al.  Subversion of Retrograde Trafficking by Translocated Pathogen Effectors. , 2016, Trends in microbiology.

[3]  Itay Mayrose,et al.  ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules , 2016, Nucleic Acids Res..

[4]  C. Elwell,et al.  Chlamydia cell biology and pathogenesis , 2016, Nature Reviews Microbiology.

[5]  R. Teasdale,et al.  Sortilin is associated with the chlamydial inclusion and is modulated during infection , 2016, Biology Open.

[6]  J. Samuel,et al.  Contrasting Lifestyles Within the Host Cell , 2016, Microbiology spectrum.

[7]  Leiliang Zhang,et al.  A role for retromer in hepatitis C virus replication , 2016, Cellular and Molecular Life Sciences.

[8]  Marleen Temmerman,et al.  Global Estimates of the Prevalence and Incidence of Four Curable Sexually Transmitted Infections in 2012 Based on Systematic Review and Global Reporting , 2015, PloS one.

[9]  R. Hayward,et al.  A Chlamydia effector recruits CEP170 to reprogram host microtubule organization , 2015, Journal of Cell Science.

[10]  K. Hybiske Expanding the Molecular Toolkit for Chlamydia. , 2015, Cell host & microbe.

[11]  Gwendolyn M. Jang,et al.  Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection. , 2015, Cell host & microbe.

[12]  I. Derré,et al.  Chlamydiae interaction with the endoplasmic reticulum: contact, function and consequences , 2015, Cellular microbiology.

[13]  T. Hackstadt,et al.  Chlamydia trachomatis inclusion membrane protein CT850 interacts with the dynein light chain DYNLT1 (Tctex1). , 2015, Biochemical and biophysical research communications.

[14]  B. Renard,et al.  The Proteome of the Isolated Chlamydia trachomatis Containing Vacuole Reveals a Complex Trafficking Platform Enriched for Retromer Components , 2015, PLoS pathogens.

[15]  Jeffrey R. Barker,et al.  Integrating chemical mutagenesis and whole-genome sequencing as a platform for forward and reverse genetic analysis of Chlamydia. , 2015, Cell host & microbe.

[16]  Michael J E Sternberg,et al.  The Phyre2 web portal for protein modeling, prediction and analysis , 2015, Nature Protocols.

[17]  C. Burd,et al.  Direct Binding of Retromer to Human Papillomavirus Type 16 Minor Capsid Protein L2 Mediates Endosome Exit during Viral Infection , 2015, PLoS pathogens.

[18]  S. Kohlhoff,et al.  Treatment of chlamydial infections: 2014 update , 2015, Expert opinion on pharmacotherapy.

[19]  Elizabeth R. Moore,et al.  Reconceptualizing the chlamydial inclusion as a pathogen-specified parasitic organelle: an expanded role for Inc proteins , 2014, Front. Cell. Infect. Microbiol..

[20]  R. Teasdale,et al.  Structural Basis for Different Phosphoinositide Specificities of the PX Domains of Sorting Nexins Regulating G-protein Signaling* , 2014, The Journal of Biological Chemistry.

[21]  L. M. Stevers,et al.  Rapid Mapping of Interactions between Human SNX-BAR Proteins Measured In Vitro by AlphaScreen and Single-molecule Spectroscopy * , 2014, Molecular & Cellular Proteomics.

[22]  L. Johannes,et al.  The Legionella effector RidL inhibits retrograde trafficking to promote intracellular replication. , 2013, Cell host & microbe.

[23]  T. Hackstadt,et al.  Chlamydia trachomatis inclusion membrane protein CT228 recruits elements of the myosin phosphatase pathway to regulate release mechanisms. , 2013, Cell reports.

[24]  Philip R. Evans,et al.  How good are my data and what is the resolution? , 2013, Acta crystallographica. Section D, Biological crystallography.

[25]  R. Bastidas,et al.  Chlamydial intracellular survival strategies. , 2013, Cold Spring Harbor perspectives in medicine.

[26]  H. Agaisse,et al.  Host Pathways Important for Coxiella burnetii Infection Revealed by Genome-Wide RNA Interference Screening , 2013, mBio.

[27]  J. Hurley,et al.  Molecular basis for SNX-BAR-mediated assembly of distinct endosomal sorting tubules , 2012, The EMBO journal.

[28]  J. Gurtler,et al.  Salmonella - Distribution, Adaptation, Control Measures and Molecular Technologies , 2012 .

[29]  Julian Parkhill,et al.  Whole genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing , 2012, Nature Genetics.

[30]  T. Hackstadt,et al.  Evolution and Conservation of Predicted Inclusion Membrane Proteins in Chlamydiae , 2012, Comparative and functional genomics.

[31]  Nathaniel Echols,et al.  The Phenix software for automated determination of macromolecular structures. , 2011, Methods.

[32]  C. Elwell,et al.  Chlamydia trachomatis Co-opts GBF1 and CERT to Acquire Host Sphingomyelin for Distinct Roles during Intracellular Development , 2011, PLoS pathogens.

[33]  H. Agaisse,et al.  The Lipid Transfer Protein CERT Interacts with the Chlamydia Inclusion Protein IncD and Participates to ER-Chlamydia Inclusion Membrane Contact Sites , 2011, PLoS pathogens.

[34]  Owen Johnson,et al.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM , 2011, Acta crystallographica. Section D, Biological crystallography.

[35]  Randy J. Read,et al.  Overview of the CCP4 suite and current developments , 2011, Acta crystallographica. Section D, Biological crystallography.

[36]  G. Zhong,et al.  Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins , 2011, BMC Genomics.

[37]  Jack T. H. Wang,et al.  The SNX-PX-BAR Family in Macropinocytosis: The Regulation of Macropinosome Formation by SNX-PX-BAR Proteins , 2010, PloS one.

[38]  T. Hackstadt,et al.  Specific chlamydial inclusion membrane proteins associate with active Src family kinases in microdomains that interact with the host microtubule network , 2010, Cellular microbiology.

[39]  Jon W. Huss,et al.  BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources , 2009, Genome Biology.

[40]  H. Korswagen,et al.  The Retromer Coat Complex Coordinates Endosomal Sorting and Dynein-Mediated Transport, with Carrier Recognition by the trans-Golgi Network , 2009, Developmental cell.

[41]  H. Liu,et al.  The Phox Domain of Sorting Nexin 5 Lacks Phosphatidylinositol 3-Phosphate (PtdIns(3)P) Specificity and Preferentially Binds to Phosphatidylinositol 4,5-Bisphosphate (PtdIns(4,5)P2)*♦ , 2009, The Journal of Biological Chemistry.

[42]  P. Timms,et al.  Chlamydia trachomatis responds to heat shock, penicillin induced persistence, and IFN-gamma persistence by altering levels of the extracytoplasmic stress response protease HtrA , 2008, BMC Microbiology.

[43]  Philip A. Ewels,et al.  Sorting nexin-1 defines an early phase of Salmonella-containing vacuole-remodeling during Salmonella infection , 2008, Journal of Cell Science.

[44]  V. N. Lazarev,et al.  Inclusion membrane proteins of Chlamydiaceae , 2008, Biomeditsinskaia khimiia.

[45]  Ding Chen,et al.  Characterization of Fifty Putative Inclusion Membrane Proteins Encoded in the Chlamydia trachomatis Genome , 2008, Infection and Immunity.

[46]  M. Nilges,et al.  SNARE Protein Mimicry by an Intracellular Bacterium , 2008, PLoS pathogens.

[47]  O. Pylypenko,et al.  The PX‐BAR membrane‐remodeling unit of sorting nexin 9 , 2007, The EMBO journal.

[48]  K. A. Rzomp,et al.  Chlamydia pneumoniae Inclusion Membrane Protein Cpn0585 Interacts with Multiple Rab GTPases , 2007, Infection and Immunity.

[49]  Randy J. Read,et al.  Phaser crystallographic software , 2007, Journal of applied crystallography.

[50]  F. Cordelières,et al.  A guided tour into subcellular colocalization analysis in light microscopy , 2006, Journal of microscopy.

[51]  R. Teasdale,et al.  Visualisation of macropinosome maturation by the recruitment of sorting nexins , 2006, Journal of Cell Science.

[52]  K. A. Rzomp,et al.  The GTPase Rab4 Interacts with Chlamydia trachomatis Inclusion Membrane Protein CT229 , 2006, Infection and Immunity.

[53]  A. Hounslow,et al.  Determinants of the endosomal localization of sorting nexin 1. , 2005, Molecular biology of the cell.

[54]  R. Teasdale,et al.  The Phox Homology (PX) Domain-dependent, 3-Phosphoinositide-mediated Association of Sorting Nexin-1 with an Early Sorting Endosomal Compartment Is Required for Its Ability to Regulate Epidermal Growth Factor Receptor Degradation* , 2002, The Journal of Biological Chemistry.

[55]  M. Scidmore,et al.  Proteins in the chlamydial inclusion membrane. , 2002, Microbes and infection.

[56]  T. Hackstadt,et al.  Mammalian 14‐3‐3β associates with the Chlamydia trachomatis inclusion membrane via its interaction with IncG , 2001, Molecular microbiology.

[57]  D. Jamison,et al.  Disease Control Priorities in Developing Countries , 1993 .

[58]  I. Denham,et al.  Sexually Transmitted Infections , 2013 .

[59]  R. Teasdale,et al.  The Phosphoinositides: Key Regulators of Salmonella Containing Vacuole (SCV) Trafficking and Identity , 2012 .

[60]  R. Teasdale,et al.  Insights into the PX (phox-homology) domain and SNX (sorting nexin) protein families: structures, functions and roles in disease. , 2012, The Biochemical journal.

[61]  P. Emsley,et al.  Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.

[62]  M. Ravaoarinoro,et al.  Chlamydia trachomatis persistence: an update. , 2006, Microbiological research.

[63]  M. Ward,et al.  Chlamydial classification, development and structure. , 1983, British medical bulletin.