The emerging and uncultivated potential of CRISPR technology in plant science
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Simon Sretenovic | Yiping Qi | Yingxiao Zhang | Aimee A. Malzahn | Yiping Qi | Aimee A Malzahn | Simon Sretenovic | Yingxiao Zhang
[1] Wei Wang,et al. Genome-wide Targeted Mutagenesis in Rice Using the CRISPR/Cas9 System. , 2017, Molecular plant.
[2] J. Qiu,et al. Progress and prospects in plant genome editing , 2017, Nature Plants.
[3] A. Aharoni,et al. Efficient in planta gene targeting in tomato using geminiviral replicons and the CRISPR/Cas9 system. , 2018, The Plant journal : for cell and molecular biology.
[4] Soon Il Kwon,et al. DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins , 2015, Nature Biotechnology.
[5] Jin-Soo Kim. Precision genome engineering through adenine and cytosine base editing , 2018, Nature Plants.
[6] Daniel F. Voytas,et al. A CRISPR/Cas9 Toolbox for Multiplexed Plant Genome Editing and Transcriptional Regulation1[OPEN] , 2015, Plant Physiology.
[7] T. Higashiyama,et al. pKAMA-ITACHI Vectors for Highly Efficient CRISPR/Cas9-Mediated Gene Knockout in Arabidopsis thaliana , 2016, Plant & cell physiology.
[8] Ronald D. Vale,et al. A Protein-Tagging System for Signal Amplification in Gene Expression and Fluorescence Imaging , 2014, Cell.
[9] Morgan L. Maeder,et al. Characterization of Staphylococcus aureus Cas9: a smaller Cas9 for all-in-one adeno-associated virus delivery and paired nickase applications , 2015, Genome Biology.
[10] Luca Pinello,et al. An APOBEC3A-Cas9 base editor with minimized bystander and off-target activities , 2018, Nature Biotechnology.
[11] Wei Li,et al. DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A , 2017, Genome Biology.
[12] Bing Yang,et al. Highly Efficient A·T to G·C Base Editing by Cas9n-Guided tRNA Adenosine Deaminase in Rice. , 2018, Molecular plant.
[13] Haoyi Wang,et al. Temperature effect on CRISPR-Cas9 mediated genome editing. , 2017, Journal of genetics and genomics = Yi chuan xue bao.
[14] Kira S. Makarova,et al. Engineering of CRISPR-Cas12b for human genome editing , 2019, Nature Communications.
[15] H. Puchta,et al. The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny. , 2014, The Plant Journal.
[16] Fang Yang,et al. Potential high-frequency off-target mutagenesis induced by CRISPR/Cas9 in Arabidopsis and its prevention , 2017, Plant Molecular Biology.
[17] J. Ji,et al. Efficient generation of mice carrying homozygous double-floxp alleles using the Cas9-Avidin/Biotin-donor DNA system , 2017, Cell Research.
[18] Wei Gao,et al. Genome Editing in Cotton with the CRISPR/Cas9 System , 2017, Front. Plant Sci..
[19] Aviv Regev,et al. RNA targeting with CRISPR–Cas13 , 2017, Nature.
[20] Aviv Regev,et al. Nucleic acid detection with CRISPR-Cas13a/C2c2 , 2017, Science.
[21] Aimee A. Malzahn,et al. Plant genome editing with TALEN and CRISPR , 2017, Cell & Bioscience.
[22] A. Granell,et al. A modular toolbox for gRNA–Cas9 genome engineering in plants based on the GoldenBraid standard , 2016, Plant Methods.
[23] D. Voytas,et al. DNA Replicons for Plant Genome Engineering[W][OPEN] , 2014, Plant Cell.
[24] Akihiko Kondo,et al. Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion , 2017, Nature Biotechnology.
[25] Tautvydas Karvelis,et al. Rapid characterization of CRISPR-Cas9 protospacer adjacent motif sequence elements , 2015, Genome Biology.
[26] Jenny Banh,et al. Morphogenic Regulators Baby boom and Wuschel Improve Monocot Transformation[OPEN] , 2016, Plant Cell.
[27] Bing Yang,et al. Targeted mutagenesis in tetraploid switchgrass (Panicum virgatum L.) using CRISPR/Cas9 , 2017, Plant biotechnology journal.
[28] Lu Zhang,et al. Efficient precise knockin with a double cut HDR donor after CRISPR/Cas9-mediated double-stranded DNA cleavage , 2017, Genome Biology.
[29] Jennifer A. Doudna,et al. Programmed DNA destruction by miniature CRISPR-Cas14 enzymes , 2018, Science.
[30] V. Sundaresan,et al. A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds , 2018, Nature.
[31] Prashant Mali,et al. Orthogonal Cas9 Proteins for RNA-Guided Gene Regulation and Editing , 2013, Nature Methods.
[32] Xuan Zheng,et al. Multiplex gene regulation by CRISPR-ddCpf1 , 2017, Cell Discovery.
[33] Tao Zhang,et al. A large-scale whole-genome sequencing analysis reveals highly specific genome editing by both Cas9 and Cpf1 (Cas12a) nucleases in rice , 2018, Genome Biology.
[34] Emma M Schatoff,et al. Optimized base editors enable efficient editing in cells, organoids and mice , 2018, Nature Biotechnology.
[35] C. R. Esteban,et al. In Vivo Target Gene Activation via CRISPR/Cas9-Mediated Trans-epigenetic Modulation , 2017, Cell.
[36] Pharmacological inhibition of DNA-PK stimulates Cas9-mediated genome editing , 2015, Genome Medicine.
[37] H. Gu,et al. Engineered xCas9 and SpCas9‐NG variants broaden PAM recognition sites to generate mutations in Arabidopsis plants , 2019, Plant biotechnology journal.
[38] Jian‐Kang Zhu,et al. Expanding the base editing scope in rice by using Cas9 variants , 2018, Plant biotechnology journal.
[39] Ahmed Mahas,et al. RNA virus interference via CRISPR/Cas13a system in plants , 2017, Genome Biology.
[40] Kevin T. Zhao,et al. Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T:A base editors with higher efficiency and product purity , 2017, Science Advances.
[41] A. Levy,et al. High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[42] Markita P Landry,et al. Nanoparticle-Mediated Delivery towards Advancing Plant Genetic Engineering. , 2018, Trends in biotechnology.
[43] Wei Li,et al. Repurposing CRISPR-Cas12b for mammalian genome engineering , 2018, Cell Discovery.
[44] Kunling Chen,et al. Perfectly matched 20-nucleotide guide RNA sequences enable robust genome editing using high-fidelity SpCas9 nucleases , 2017, Genome Biology.
[45] Sita J. Saunders,et al. An updated evolutionary classification of CRISPR–Cas systems , 2015, Nature Reviews Microbiology.
[46] Masafumi Mikami,et al. Highly specific targeted mutagenesis in plants using Staphylococcus aureus Cas9 , 2016, Scientific Reports.
[47] Krishanu Saha,et al. Assembly of CRISPR ribonucleoproteins with biotinylated oligonucleotides via an RNA aptamer for precise gene editing , 2017, Nature Communications.
[48] M. Jinek,et al. Structural Plasticity of PAM Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9. , 2016, Molecular cell.
[49] David A. Scott,et al. In vivo genome editing using Staphylococcus aureus Cas9 , 2015, Nature.
[50] Xuecheng Wang,et al. Egg cell-specific promoter-controlled CRISPR/Cas9 efficiently generates homozygous mutants for multiple target genes in Arabidopsis in a single generation , 2015, Genome Biology.
[51] V. Myer,et al. Characterization of the interplay between DNA repair and CRISPR/Cas9-induced DNA lesions at an endogenous locus , 2017, Nature Communications.
[52] Jin-Soo Kim,et al. Site-directed mutagenesis in Petunia × hybrida protoplast system using direct delivery of purified recombinant Cas9 ribonucleoproteins , 2016, Plant Cell Reports.
[53] M. Minczuk,et al. Mitochondrial Genome Engineering: The Revolution May Not Be CRISPR-Ized , 2017, Trends in genetics : TIG.
[54] Jian-Feng Li,et al. Gene disruption through base editing-induced messenger RNA missplicing in plants. , 2019, The New phytologist.
[55] V. Orbović,et al. Editing Citrus Genome via SaCas9/sgRNA System , 2017, Front. Plant Sci..
[56] Jian‐Kang Zhu,et al. Multiplex gene editing in rice with simplified CRISPR-Cpf 1 and CRISPR-Cas 9 systems Running Title : Simplified single transcriptional unit CRISPR systems , 2018 .
[57] Caixia Gao,et al. Applications and potential of genome editing in crop improvement , 2018, Genome Biology.
[58] Marco Breinig,et al. Multiplexed orthogonal genome editing and transcriptional activation by Cas12a , 2018, Nature Methods.
[59] Jian‐Kang Zhu,et al. Optimizing base editors for improved efficiency and expanded editing scope in rice , 2019, Plant biotechnology journal.
[60] Jiayang Li,et al. xCas9 expands the scope of genome editing with reduced efficiency in rice , 2019, Plant biotechnology journal.
[61] Honghui Lin,et al. Improved Base Editor for Efficiently Inducing Genetic Variations in Rice with CRISPR/Cas9-Guided Hyperactive hAID Mutant. , 2018, Molecular plant.
[62] Yannick Jacob,et al. Increased efficiency of targeted mutagenesis by CRISPR/Cas9 in plants using heat stress , 2018, The Plant journal : for cell and molecular biology.
[63] T. Ushijima,et al. Three-Component Repurposed Technology for Enhanced Expression: Highly Accumulable Transcriptional Activators via Branched Tag Arrays , 2018, The CRISPR journal.
[64] Yanpeng Wang,et al. CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture. , 2019, Annual review of plant biology.
[65] Mazhar Adli,et al. CRISPR-Cas9-AID base editor is a powerful gain-of-function screening tool , 2016, Nature Methods.
[66] Zachary H. Lemmon,et al. Rapid improvement of domestication traits in an orphan crop by genome editing , 2018, Nature Plants.
[67] Jing Li,et al. Enhanced mammalian genome editing by new Cas12a orthologs with optimized crRNA scaffolds , 2019, Genome Biology.
[68] Xin Wang,et al. Multiplex CRISPR/Cas9-based genome engineering enhanced by Drosha-mediated sgRNA-shRNA structure , 2016, Scientific Reports.
[69] Li Yang,et al. Efficient base editing in methylated regions with a human APOBEC3A-Cas9 fusion , 2018, Nature Biotechnology.
[70] Anob M. Chakrabarti,et al. Target-Specific Precision of CRISPR-Mediated Genome Editing , 2018, bioRxiv.
[71] Rui Zhang,et al. Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion , 2017, Nature Biotechnology.
[72] Jian-Kang Zhu,et al. CRISPR/Cas9-mediated gene targeting in Arabidopsis using sequential transformation , 2018, Nature Communications.
[73] Yanli Wang,et al. C2c1-sgRNA Complex Structure Reveals RNA-Guided DNA Cleavage Mechanism. , 2017, Molecular cell.
[74] Hong Li,et al. Engineering Introns to Express RNA Guides for Cas9- and Cpf1-Mediated Multiplex Genome Editing. , 2018, Molecular plant.
[75] Kunling Chen,et al. Genotyping genome‐edited mutations in plants using CRISPR ribonucleoprotein complexes , 2018, Plant biotechnology journal.
[76] Hui-Li Xing,et al. A CRISPR/Cas9 toolkit for multiplex genome editing in plants , 2014, BMC Plant Biology.
[77] Evgeny Gladilin,et al. Live‐cell CRISPR imaging in plants reveals dynamic telomere movements , 2017, The Plant journal : for cell and molecular biology.
[78] H. Nishimasu,et al. Genome editing in plants by engineered CRISPR–Cas9 recognizing NG PAM , 2018, Nature Plants.
[79] R. Sánchez-Fernández,et al. In planta gene targeting , 2012, Proceedings of the National Academy of Sciences.
[80] Bo Huang,et al. A scalable strategy for high-throughput GFP tagging of endogenous human proteins , 2016, Proceedings of the National Academy of Sciences.
[81] H. Kaya,et al. A Split Staphylococcus aureus Cas9 as a Compact Genome-Editing Tool in Plants , 2017, Plant & cell physiology.
[82] Xingliang Ma,et al. CRISPR/Cas9 Platforms for Genome Editing in Plants: Developments and Applications. , 2016, Molecular plant.
[83] Yi Zhang,et al. Construction of a Genome-Wide Mutant Library in Rice Using CRISPR/Cas9. , 2017, Molecular plant.
[84] Benjamin L. Oakes,et al. CRISPR-CasX is an RNA-dominated enzyme active for human genome editing , 2019, Nature.
[85] Kiran S. Gajula. Designing an Elusive C•G→G•C CRISPR Base Editor. , 2019, Trends in biochemical sciences.
[86] D. Voytas,et al. Robust Transcriptional Activation in Plants Using Multiplexed CRISPR-Act2.0 and mTALE-Act Systems. , 2017, Molecular plant.
[87] Emma J. Chory,et al. Rapid and reversible epigenome editing by endogenous chromatin regulators , 2017, Nature Communications.
[88] J. Joung,et al. Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition , 2015, Nature Biotechnology.
[89] Yi Zhang,et al. Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA , 2016, Nature Communications.
[90] S. Srivastava,et al. Manipulating mitochondrial DNA heteroplasmy by a mitochondrially targeted restriction endonuclease. , 2001, Human molecular genetics.
[91] Luca Pinello,et al. Engineered CRISPR-Cas12a variants with increased activities and improved targeting ranges for gene, epigenetic and base editing , 2018, Nature Biotechnology.
[92] Yunde Zhao,et al. Self-processing of ribozyme-flanked RNAs into guide RNAs in vitro and in vivo for CRISPR-mediated genome editing. , 2014, Journal of integrative plant biology.
[93] G. Church,et al. CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering , 2013, Nature Biotechnology.
[94] N. Hara,et al. An adenine base editor with expanded targeting scope using SpCas9‐NGv1 in rice , 2019, Plant biotechnology journal.
[95] David R. Liu,et al. Evolved Cas9 variants with broad PAM compatibility and high DNA specificity , 2018, Nature.
[96] B. Courtois,et al. Turning rice meiosis into mitosis , 2016, Cell Research.
[97] Gang Bao,et al. The Neisseria meningitidis CRISPR-Cas9 System Enables Specific Genome Editing in Mammalian Cells , 2016, Molecular therapy : the journal of the American Society of Gene Therapy.
[98] David R. Liu,et al. Analysis and minimization of cellular RNA editing by DNA adenine base editors , 2019, Science Advances.
[99] R. Stupar,et al. CRISPR/Cas mutagenesis of soybean and Medicago truncatula using a new web-tool and a modified Cas9 enzyme , 2015, GM crops & food.
[100] Jin-Soo Kim,et al. Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells , 2016, Nature Biotechnology.
[101] J. Doudna,et al. A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity , 2012, Science.
[102] M. Mahfouz,et al. Engineering RNA Virus Interference via the CRISPR/Cas13 Machinery in Arabidopsis , 2018, Viruses.
[103] Yunde Zhao,et al. Synthesis-dependent repair of Cpf1-induced double strand DNA breaks enables targeted gene replacement in rice , 2018, Journal of experimental botany.
[104] Martin J. Aryee,et al. Genome-wide specificities of CRISPR-Cas Cpf1 nucleases in human cells , 2016, Nature Biotechnology.
[105] Michael J. Ziller,et al. Genome-wide tracking of dCas9-methyltransferase footprints , 2018, Nature Communications.
[106] Yunde Zhao,et al. Generation of Targeted Point Mutations in Rice by a Modified CRISPR/Cas9 System. , 2017, Molecular plant.
[107] Caixia Gao,et al. Domestication of wild tomato is accelerated by genome editing , 2018, Nature Biotechnology.
[108] Shuangxia Jin,et al. Robust CRISPR/Cpf1 (Cas12a)‐mediated genome editing in allotetraploid cotton (Gossypium hirsutum) , 2019, Plant biotechnology journal.
[109] David A. Scott,et al. Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity , 2013, Cell.
[110] Shouling Xu,et al. CRISPR‐S: an active interference element for a rapid and inexpensive selection of genome‐edited, transgene‐free rice plants , 2017, Plant biotechnology journal.
[111] Kira S. Makarova,et al. Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA , 2016, Cell.
[112] Yarden Katz,et al. Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system , 2013, Cell Research.
[113] Antonio J Giraldez,et al. CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing , 2017, bioRxiv.
[114] K. Sugiura,et al. Development of a mono-promoter-driven CRISPR/Cas9 system in mammalian cells , 2015, Scientific Reports.
[115] Jian‐Kang Zhu,et al. Precise Editing of a Target Base in the Rice Genome Using a Modified CRISPR/Cas9 System. , 2017, Molecular plant.
[116] Beum-Chang Kang,et al. CRISPR/Cpf1-mediated DNA-free plant genome editing , 2017, Nature Communications.
[117] K. Cornish,et al. CRISPR/Cas9 genome editing of rubber producing dandelion Taraxacum kok-saghyz using Agrobacterium rhizogenes without selection , 2016 .
[118] M. Mahfouz,et al. RNA-guided transcriptional regulation in planta via synthetic dCas9-based transcription factors. , 2015, Plant biotechnology journal.
[119] Diego Orzaez,et al. Assessment of Cas12a‐mediated gene editing efficiency in plants , 2019, Plant biotechnology journal.
[120] Jennifer A. Doudna,et al. Enhanced proofreading governs CRISPR-Cas9 targeting accuracy , 2017, Nature.
[121] Xifeng Gao,et al. A Highly Efficient Cell Division-Specific CRISPR/Cas9 System Generates Homozygous Mutants for Multiple Genes in Arabidopsis , 2018, International journal of molecular sciences.
[122] T. Lu,et al. Tunable and Multifunctional Eukaryotic Transcription Factors Based on CRISPR/Cas , 2013, ACS synthetic biology.
[123] Honghui Lin,et al. A CRISPR/Cas9 toolkit for efficient targeted base editing to induce genetic variations in rice , 2017, Science China Life Sciences.
[124] Jennifer A. Doudna,et al. New CRISPR-Cas systems from uncultivated microbes , 2016, Nature.
[125] Yunde Zhao,et al. Precise gene replacement in rice by RNA transcript-templated homologous recombination , 2019, Nature Biotechnology.
[126] D. Voytas,et al. De novo domestication of wild tomato using genome editing , 2018, Nature Biotechnology.
[127] Alexandro E. Trevino,et al. Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex , 2014, Nature.
[128] Joseph M. Jacobson,et al. A Cas9 with Complete PAM Recognition for Adenine Dinucleotides , 2018, bioRxiv.
[129] Wei Zhang,et al. High-efficiency CRISPR/Cas9 multiplex gene editing using the glycine tRNA-processing system-based strategy in maize , 2016, BMC Biotechnology.
[130] Martin J. Aryee,et al. Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors , 2019, Nature.
[131] C. Kunz,et al. DNA Repair in Mammalian Cells , 2009, Cellular and Molecular Life Sciences.
[132] Yiping Qi,et al. A Single Transcript CRISPR-Cas9 System for Efficient Genome Editing in Plants. , 2016, Molecular plant.
[133] Hitoshi Sakakibara,et al. An efficient DNA- and selectable-marker-free genome-editing system using zygotes in rice , 2019, Nature Plants.
[134] D. Voytas,et al. ZFN, TALEN and CRISPR-Cas9 mediated homology directed gene insertion in Arabidopsis: A disconnect between somatic and germinal cells. , 2018, Journal of genetics and genomics = Yi chuan xue bao.
[135] A. Serero,et al. Programming sites of meiotic crossovers using Spo11 fusion proteins , 2017, Nucleic acids research.
[136] Wensheng Wei,et al. Long-term dual-color tracking of genomic loci by modified sgRNAs of the CRISPR/Cas9 system , 2016, Nucleic acids research.
[137] V. Orbović,et al. CRISPR‐LbCas12a‐mediated modification of citrus , 2019, Plant biotechnology journal.
[138] Takanori Nakane,et al. Structure and Engineering of Francisella novicida Cas9 , 2016, Cell.
[139] Jian‐Kang Zhu,et al. Genome Engineering in Rice Using Cas9 Variants that Recognize NG PAM Sequences. , 2019, Molecular plant.
[140] Matthew Deaner,et al. Enabling Graded and Large-Scale Multiplex of Desired Genes Using a Dual-Mode dCas9 Activator in Saccharomyces cerevisiae. , 2017, ACS synthetic biology.
[141] C. Moraes,et al. Specific elimination of mutant mitochondrial genomes in patient–derived cells by mitoTALENs , 2013, Nature Medicine.
[142] D. Grunwald,et al. CRISPR-Sirius: RNA Scaffolds for Signal Amplification in Genome Imaging , 2018, Nature Methods.
[143] Klaus N. Lovendahl,et al. Increasing Cas9-mediated homology-directed repair efficiency through covalent tethering of DNA repair template , 2017, Communications Biology.
[144] Tao Zhang,et al. A CRISPR–Cpf1 system for efficient genome editing and transcriptional repression in plants , 2017, Nature Plants.
[145] M. Mahfouz,et al. High efficiency of targeted mutagenesis in arabidopsis via meiotic promoter-driven expression of Cas9 endonuclease , 2016, Plant Cell Reports.
[146] Jun Li,et al. Targeted genome modification of crop plants using a CRISPR-Cas system , 2013, Nature Biotechnology.
[147] P. Hofvander,et al. Efficient targeted multiallelic mutagenesis in tetraploid potato (Solanum tuberosum) by transient CRISPR-Cas9 expression in protoplasts , 2016, Plant Cell Reports.
[148] Detlef Weigel,et al. Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease , 2013, Nature Biotechnology.
[149] Luke A. Gilbert,et al. Engineering Complex Synthetic Transcriptional Programs with CRISPR RNA Scaffolds , 2015, Cell.
[150] Jie Zhang,et al. Whole genome sequencing reveals rare off‐target mutations and considerable inherent genetic or/and somaclonal variations in CRISPR/Cas9‐edited cotton plants , 2018, Plant biotechnology journal.
[151] Hidde L Ploegh,et al. Inhibition of non-homologous end joining increases the efficiency of CRISPR/Cas9-mediated precise [TM: inserted] genome editing , 2015, Nature Biotechnology.
[152] G. Martin,et al. Generation of a Collection of Mutant Tomato Lines Using Pooled CRISPR Libraries1 , 2017, Plant Physiology.
[153] Yan Zhang,et al. Gene activation in human cells using CRISPR/Cpf1-p300 and CRISPR/Cpf1-SunTag systems , 2017, Protein & Cell.
[154] Eunji Kim,et al. In vivo genome editing with a small Cas9 orthologue derived from Campylobacter jejuni , 2017, Nature Communications.
[155] Zhanyuan J. Zhang,et al. Selectable marker independent transformation of recalcitrant maize inbred B73 and sorghum P898012 mediated by morphogenic regulators BABY BOOM and WUSCHEL2 , 2017, Plant Cell Reports.
[156] C. Mello,et al. 5′ Modifications Improve Potency and Efficacy of DNA Donors for Precision Genome Editing , 2018, bioRxiv.
[157] S. Conticello. The AID/APOBEC family of nucleic acid mutators , 2008, Genome Biology.
[158] A. Regev,et al. Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System , 2015, Cell.
[159] J. Rinn,et al. Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display , 2015, Nature Methods.
[160] Shaofang Li,et al. Cas9-NG Greatly Expands the Targeting Scope of the Genome-Editing Toolkit by Recognizing NG and Other Atypical PAMs in Rice. , 2019, Molecular plant.
[161] Shaojie Zhang,et al. Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow , 2016, Nature Biotechnology.
[162] Xiangbing Meng,et al. Increasing the efficiency of CRISPR‐Cas9‐VQR precise genome editing in rice , 2017, Plant biotechnology journal.
[163] David A. Scott,et al. A Survey of Genome Editing Activity for 16 Cpf1 orthologs , 2017, bioRxiv.
[164] Gang Bao,et al. A high-fidelity Cas9 mutant delivered as a ribonucleoprotein complex enables efficient gene editing in human haematopoietic stem and progenitor cells , 2018, Nature Medicine.
[165] Tao Zhang,et al. Application of CRISPR-Cas12a temperature sensitivity for improved genome editing in rice, maize, and Arabidopsis , 2019, BMC Biology.
[166] Sangsu Bae,et al. Microhomology-based choice of Cas9 nuclease target sites , 2014, Nature Methods.
[167] Alessandro Romanel,et al. A highly specific SpCas9 variant is identified by in vivo screening in yeast , 2018, Nature Biotechnology.
[168] Caixia Gao,et al. Manipulating mRNA splicing by base editing in plants , 2018, Science China Life Sciences.
[169] D. Voytas,et al. High-frequency, precise modification of the tomato genome , 2015, Genome Biology.
[170] H. Puchta,et al. CRISPR/Cas-mediated gene targeting in plants: finally a turn for the better for homologous recombination , 2019, Plant Cell Reports.
[171] Gene W. Yeo,et al. Elimination of Toxic Microsatellite Repeat Expansion RNA by RNA-Targeting Cas9 , 2017, Cell.
[172] Tao Zhang,et al. A CRISPR–Cpf1 system for efficient genome editing and transcriptional repression in plants , 2017, Nature Plants.
[173] J. Rinn,et al. CRISPR Display: A modular method for locus-specific targeting of long noncoding RNAs and synthetic RNA devices in vivo , 2015, Nature Methods.
[174] Maria Novatchkova,et al. Turning Meiosis into Mitosis , 2009, PLoS biology.
[175] T. Mockler,et al. Precise insertion and guided editing of higher plant genomes using Cpf1 CRISPR nucleases , 2017, Scientific Reports.
[176] James E. DiCarlo,et al. RNA-Guided Human Genome Engineering via Cas9 , 2013, Science.
[177] P. Quick,et al. CRISPR-Cas9 and CRISPR-Cpf1 mediated targeting of a stomatal developmental gene EPFL9 in rice , 2017, Plant Cell Reports.
[178] Kenichiro Hata,et al. Targeted DNA demethylation in vivo using dCas9–peptide repeat and scFv–TET1 catalytic domain fusions , 2016, Nature Biotechnology.
[179] C. Spillane,et al. Generation of stable nulliplex autopolyploid lines of Arabidopsis thaliana using CRISPR/Cas9 genome editing , 2017, Plant Cell Reports.
[180] Ya-ping Fu,et al. Expanding the Range of CRISPR/Cas9 Genome Editing in Rice. , 2016, Molecular plant.
[181] Kutubuddin A Molla,et al. CRISPR/Cas-Mediated Base Editing: Technical Considerations and Practical Applications. , 2019, Trends in biotechnology.
[182] Benjamin L. Oakes,et al. CRISPR-CasX is an RNA-dominated enzyme active for human genome editing , 2019, Nature.
[183] Daesik Kim,et al. Directed evolution of CRISPR-Cas9 to increase its specificity , 2017, Nature Communications.
[184] A. May,et al. DNA Repair Profiling Reveals Nonrandom Outcomes at Cas9-Mediated Breaks. , 2016, Molecular cell.
[185] D. Voytas,et al. Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways , 2013, Genome research.
[186] K. Edwards,et al. Development of an Agrobacterium‐delivered CRISPR/Cas9 system for wheat genome editing , 2019, Plant biotechnology journal.
[187] Areum Jo,et al. Efficient Mitochondrial Genome Editing by CRISPR/Cas9 , 2015, BioMed research international.
[188] Wei Wang,et al. Transgenerational CRISPR-Cas9 Activity Facilitates Multiplex Gene Editing in Allopolyploid Wheat , 2018, The CRISPR journal.
[189] Y. E. Chen,et al. RS-1 enhances CRISPR/Cas9- and TALEN-mediated knock-in efficiency , 2016, Nature Communications.
[190] E. Schröck,et al. The contribution of homology arms to nuclease-assisted genome engineering , 2017, Nucleic acids research.
[191] J. Joung,et al. High-fidelity CRISPR-Cas9 variants with undetectable genome-wide off-targets , 2015, Nature.
[192] Q. Gao,et al. Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice , 2019, Science.
[193] Martin J. Aryee,et al. Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing , 2014, Nature Biotechnology.
[194] H. Puchta,et al. Transforming plant biology and breeding with CRISPR/Cas9, Cas12 and Cas13 , 2018, FEBS letters.
[195] T. Blundell,et al. Different DNA End Configurations Dictate Which NHEJ Components Are Most Important for Joining Efficiency* , 2016, The Journal of Biological Chemistry.
[196] David A. Scott,et al. Functionally diverse type V CRISPR-Cas systems , 2019, Science.
[197] Eric S. Lander,et al. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector , 2016, Science.
[198] Y. Akao,et al. Gene Therapy for Mitochondrial Disease by Delivering Restriction Endonuclease SmaI into Mitochondria , 2002, Journal of Biomedical Science.
[199] Yunde Zhao,et al. Expanding the Scope of CRISPR/Cpf1-Mediated Genome Editing in Rice. , 2018, Molecular plant.
[200] George M. Church,et al. Multiplex and homologous recombination–mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9 , 2013, Nature Biotechnology.
[201] R. Viola,et al. DNA-Free Genetically Edited Grapevine and Apple Protoplast Using CRISPR/Cas9 Ribonucleoproteins , 2016, Front. Plant Sci..
[202] Tao Zhang,et al. Plant Genome Editing Using FnCpf1 and LbCpf1 Nucleases at Redefined and Altered PAM Sites. , 2018, Molecular plant.
[203] Benjamin L. Oakes,et al. Programmable RNA recognition and cleavage by CRISPR/Cas9 , 2014, Nature.
[204] Yan Zhang,et al. Programmable RNA Cleavage and Recognition by a Natural CRISPR-Cas9 System from Neisseria meningitidis. , 2018, Molecular cell.
[205] H. Puchta,et al. Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. , 2014, The Plant journal : for cell and molecular biology.
[206] Kabin Xie,et al. Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system , 2015, Proceedings of the National Academy of Sciences.
[207] D. Soltis,et al. Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary model for the study of polyploidy , 2018, Molecular ecology resources.
[208] Jian‐Kang Zhu,et al. Multiplex Gene Editing in Rice Using the CRISPR-Cpf1 System. , 2017, Molecular plant.
[209] Joshua K Young,et al. Genome editing in maize directed by CRISPR–Cas9 ribonucleoprotein complexes , 2016, Nature Communications.
[210] Yinqing Li,et al. Crystal Structure of Staphylococcus aureus Cas9 , 2015, Cell.
[211] Wei Liu,et al. A Robust CRISPR/Cas9 System for Convenient, High-Efficiency Multiplex Genome Editing in Monocot and Dicot Plants. , 2015, Molecular plant.
[212] J.-H. Sheen,et al. A potent Cas9-derived gene activator for plant and mammalian cells , 2017, Nature Plants.
[213] C. Jung,et al. CRISPR-Cas9 Targeted Mutagenesis Leads to Simultaneous Modification of Different Homoeologous Gene Copies in Polyploid Oilseed Rape (Brassica napus)1 , 2017, Plant Physiology.
[214] S. Jacobsen,et al. Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems , 2019, Nature Communications.
[215] Maximilian Müller,et al. Streptococcus thermophilus CRISPR-Cas9 Systems Enable Specific Editing of the Human Genome. , 2016, Molecular therapy : the journal of the American Society of Gene Therapy.
[216] Binbin Zhao,et al. Development of a Haploid-Inducer Mediated Genome Editing System for Accelerating Maize Breeding. , 2019, Molecular plant.
[217] A. Bradley,et al. Repair of double-strand breaks induced by CRISPR–Cas9 leads to large deletions and complex rearrangements , 2018, Nature Biotechnology.
[218] David R. Liu,et al. Base editing: precision chemistry on the genome and transcriptome of living cells , 2018, Nature Reviews Genetics.
[219] Feng Zhang,et al. Engineered Cpf1 variants with altered PAM specificities increase genome targeting range , 2017, Nature Biotechnology.
[220] C. Kunz,et al. DNA Repair in Mammalian Cells , 2009, Cellular and Molecular Life Sciences.
[221] Yunde Zhao,et al. An Effective Strategy for Reliably Isolating Heritable and Cas9-Free Arabidopsis Mutants Generated by CRISPR/Cas9-Mediated Genome Editing1[OPEN] , 2016, Plant Physiology.
[222] Jennifer A. Doudna,et al. Enhanced proofreading governs CRISPR-Cas9 targeting accuracy , 2017, Nature.
[223] M. Minczuk,et al. Mitochondrially targeted ZFNs for selective degradation of pathogenic mitochondrial genomes bearing large-scale deletions or point mutations , 2014, EMBO molecular medicine.
[224] Martin J. Aryee,et al. Activities and specificities of CRISPR/Cas9 and Cas12a nucleases for targeted mutagenesis in maize , 2018, Plant biotechnology journal.
[225] Luke A. Gilbert,et al. Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression , 2013, Cell.
[226] Yanpeng Wang,et al. Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes , 2017, Nature Communications.
[227] D. Patel,et al. PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease , 2016, Cell.
[228] M. Crespi,et al. CRISPR directed evolution of the spliceosome for resistance to splicing inhibitors , 2019, Genome Biology.
[229] Botao Zhang,et al. Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis , 2014, Proceedings of the National Academy of Sciences.
[230] M. Mahfouz,et al. Harnessing CRISPR/Cas systems for programmable transcriptional and post-transcriptional regulation. , 2017, Biotechnology advances.
[231] Tao Zhang,et al. Improving Plant Genome Editing with High-Fidelity xCas9 and Non-canonical PAM-Targeting Cas9-NG. , 2019, Molecular plant.
[232] M. Gonçalves,et al. In trans paired nicking triggers seamless genome editing without double-stranded DNA cutting , 2017, Nature Communications.
[233] X. Ji,et al. Genome editing of upstream open reading frames enables translational control in plants , 2018, Nature Biotechnology.
[234] Kira S. Makarova,et al. Diversity and evolution of class 2 CRISPR–Cas systems , 2017, Nature Reviews Microbiology.
[235] Q. Xie,et al. High-Efficiency Genome Editing in Arabidopsis Using YAO Promoter-Driven CRISPR/Cas9 System. , 2015, Molecular plant.
[236] H. Puchta,et al. Highly efficient heritable plant genome engineering using Cas9 orthologues from Streptococcus thermophilus and Staphylococcus aureus. , 2015, The Plant journal : for cell and molecular biology.
[237] E. Cahoon,et al. Significant enhancement of fatty acid composition in seeds of the allohexaploid, Camelina sativa, using CRISPR/Cas9 gene editing , 2017, Plant biotechnology journal.
[238] Yunde Zhao,et al. Plant genome editing using xCas9 with expanded PAM compatibility. , 2019, Journal of genetics and genomics = Yi chuan xue bao.
[239] S. Jacobsen,et al. Targeted DNA demethylation of the Arabidopsis genome using the human TET1 catalytic domain , 2018, Proceedings of the National Academy of Sciences.
[240] R. Lightowlers,et al. DNA repair in organelles: Pathways, organization, regulation, relevance in disease and aging. , 2011, Biochimica et biophysica acta.
[241] Mustafa Mir,et al. Live cell imaging of low- and non-repetitive chromosome loci using CRISPR-Cas9 , 2017, Nature Communications.
[242] N. Liu,et al. YAO is a nucleolar WD40-repeat protein critical for embryogenesis and gametogenesis in Arabidopsis , 2010, BMC Plant Biology.
[243] Peter L. Freddolino,et al. Introducing a Spectrum of Long-Range Genomic Deletions in Human Embryonic Stem Cells Using Type I CRISPR-Cas. , 2019, Molecular cell.
[244] Joshua J C Rosenthal,et al. Correction of mutations within the cystic fibrosis transmembrane conductance regulator by site-directed RNA editing , 2013, Proceedings of the National Academy of Sciences.
[245] Nozomu Yachie,et al. Engineered CRISPR-Cas9 nuclease with expanded targeting space , 2018, Science.
[246] R. Bock,et al. High-efficiency generation of fertile transplastomic Arabidopsis plants , 2019, Nature Plants.
[247] H. Kaya,et al. Efficient targeted mutagenesis of rice and tobacco genomes using Cpf1 from Francisella novicida , 2016, Scientific Reports.
[248] Botao Zhang,et al. Efficient genome editing in plants using a CRISPR/Cas system , 2013, Cell Research.
[249] N. Perrimon,et al. Highly-efficient Cas9-mediated transcriptional programming , 2015, Nature Methods.
[250] Le Cong,et al. Multiplex Genome Engineering Using CRISPR/Cas Systems , 2013, Science.
[251] Masafumi Mikami,et al. In Planta Processing of the SpCas9–gRNA Complex , 2017, Plant & cell physiology.
[252] F. White,et al. Genome editing of the disease susceptibility gene CsLOB1 in citrus confers resistance to citrus canker , 2017, Plant biotechnology journal.
[253] Max A. Horlbeck,et al. Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation , 2014, Cell.
[254] David R. Liu,et al. Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage , 2016, Nature.
[255] Chao Li,et al. Efficient C-to-T base editing in plants using a fusion of nCas9 and human APOBEC3A , 2018, Nature Biotechnology.
[256] Zachary B. Lippman,et al. Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing , 2017, Cell.
[257] J. Molinier,et al. The dual nature of homologous recombination in plants. , 2005, Trends in genetics : TIG.
[258] Jian‐Kang Zhu,et al. Gene Targeting by Homology-Directed Repair in Rice Using a Geminivirus-Based CRISPR/Cas9 System. , 2017, Molecular plant.
[259] Jonathan S. Weissman,et al. Design and specificity of long ssDNA donors for CRISPR-based knock-in , 2017, bioRxiv.
[260] David A. Scott,et al. Rationally engineered Cas9 nucleases with improved specificity , 2015, Science.
[261] Tao Zhang,et al. Single transcript unit CRISPR 2.0 systems for robust Cas9 and Cas12a mediated plant genome editing , 2019, Plant biotechnology journal.
[262] Max J. Kellner,et al. RNA editing with CRISPR-Cas13 , 2017, Science.
[263] F. Storici,et al. Transcript RNA-templated DNA recombination and repair , 2014, Nature.
[264] M. Notaguchi,et al. The Use of Grafting to Study Systemic Signaling in Plants. , 2017, Plant & cell physiology.
[265] Roger L. Chang,et al. High aspect ratio nanomaterials enable delivery of functional genetic material without DNA integration in mature plants , 2017, bioRxiv.
[266] A. Fisher,et al. Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity , 2016, Nature Structural &Molecular Biology.
[267] Jian‐Kang Zhu,et al. Multiplex gene editing in rice with simplified CRISPR-Cpf1 and CRISPR-Cas9 systems. , 2018, Journal of integrative plant biology.
[268] S. Adhya,et al. Molecular Basis of Phage Communication. , 2019, Molecular cell.
[269] Noah Jakimo,et al. Minimal PAM specificity of a highly similar SpCas9 ortholog , 2018, Science Advances.
[270] Beum-Chang Kang,et al. Precision genome engineering through adenine base editing in plants , 2018, Nature Plants.
[271] Yanpeng Wang,et al. Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew , 2014, Nature Biotechnology.
[272] S. Chao,et al. Optimizing multiplex CRISPR/Cas9-based genome editing for wheat , 2016, bioRxiv.
[273] Rongchen Wang,et al. Programmed Self-Elimination of the CRISPR/Cas9 Construct Greatly Accelerates the Isolation of Edited and Transgene-Free Rice Plants. , 2018, Molecular plant.
[274] Feng Zhang,et al. Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA , 2014, Cell.
[275] Masafumi Mikami,et al. Biallelic Gene Targeting in Rice1[OPEN] , 2015, Plant Physiology.
[276] Jacob E Corn,et al. Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA , 2016, Nature Biotechnology.
[277] Aimee A. Malzahn,et al. Rapid Evolution of Manifold CRISPR Systems for Plant Genome Editing , 2016, Front. Plant Sci..
[278] Shujie Dong,et al. One-step genome editing of elite crop germplasm during haploid induction , 2019, Nature Biotechnology.
[279] Zhukuan Cheng,et al. Clonal seeds from hybrid rice by simultaneous genome engineering of meiosis and fertilization genes , 2019, Nature Biotechnology.
[280] R. Weichselbaum,et al. A chemical compound that stimulates the human homologous recombination protein RAD51 , 2008, Proceedings of the National Academy of Sciences.
[281] Toshitsugu Fujita,et al. Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR. , 2013, Biochemical and biophysical research communications.
[282] J. Tainer,et al. Crystal structure of human uracil-DNA glycosylase in complex with a protein inhibitor: Protein mimicry of DNA , 1995, Cell.
[283] Dana Carroll,et al. Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases. , 2002, Genetics.
[284] Jian‐Kang Zhu,et al. Development of germ-line-specific CRISPR-Cas9 systems to improve the production of heritable gene modifications in Arabidopsis. , 2016, Plant biotechnology journal.
[285] Bei Yang,et al. Enhanced base editing by co-expression of free uracil DNA glycosylase inhibitor , 2017, Cell Research.
[286] Luke A. Gilbert,et al. CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes , 2013, Cell.
[287] Yunde Zhao,et al. Engineering Herbicide-Resistant Rice Plants through CRISPR/Cas9-Mediated Homologous Recombination of Acetolactate Synthase. , 2016, Molecular plant.
[288] S. Lenaghan,et al. Advanced editing of the nuclear and plastid genomes in plants. , 2018, Plant science : an international journal of experimental plant biology.
[289] M. Estelle,et al. Auxin binding protein 1 (ABP1) is not required for either auxin signaling or Arabidopsis development , 2015, Proceedings of the National Academy of Sciences.
[290] A. Kondo,et al. Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems , 2016, Science.
[291] Eugene V Koonin,et al. Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems. , 2015, Molecular cell.
[292] G. Church,et al. Cas9 gRNA engineering for genome editing, activation and repression , 2015, Nature Methods.
[293] A. Borsy,et al. Mb- and FnCpf1 nucleases are active in mammalian cells: activities and PAM preferences of four wild-type Cpf1 nucleases and of their altered PAM specificity variants , 2018, Nucleic acids research.
[294] Erin L. Doyle,et al. Targeting DNA Double-Strand Breaks with TAL Effector Nucleases , 2010, Genetics.
[295] Andrew R. Bassett,et al. Predicting the mutations generated by repair of Cas9-induced double-strand breaks , 2018, Nature Biotechnology.
[296] Yunde Zhao,et al. Efficient allelic replacement in rice by gene editing: A case study of the NRT1.1B gene. , 2018, Journal of integrative plant biology.
[297] Ya-ping Fu,et al. Targeted mutagenesis in rice using CRISPR-Cpf1 system. , 2017, Journal of genetics and genomics = Yi chuan xue bao.
[298] L. Gissot,et al. Selective gene dosage by CRISPR‐Cas9 genome editing in hexaploid Camelina sativa , 2017, Plant biotechnology journal.
[299] Martin J. Aryee,et al. Engineered CRISPR-Cas9 nucleases with altered PAM specificities , 2015, Nature.