Engineering the Interface Between Cellular Chassis and Integrated Biological Systems
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[1] S. Basu,et al. A synthetic multicellular system for programmed pattern formation , 2005, Nature.
[2] F. Studier. Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. , 1991, Journal of molecular biology.
[3] R. Burgess,et al. RNA Polymerases from Bacillus subtilisand Escherichia coli Differ in Recognition of Regulatory Signals In Vitro , 2000, Journal of bacteriology.
[4] R. Gourse,et al. rRNA transcription in Escherichia coli. , 2004, Annual review of genetics.
[5] R. Ulrich,et al. Role of quorum sensing in the pathogenicity of Burkholderia pseudomallei. , 2004, Journal of medical microbiology.
[6] Bjarke Bak Christensen,et al. gfp-Based N-Acyl Homoserine-Lactone Sensor Systems for Detection of Bacterial Communication , 2001, Applied and Environmental Microbiology.
[7] C. Squires,et al. An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[8] D. Schlessinger,et al. Mechanism and regulation of bacterial ribosomal RNA processing. , 1990, Annual review of microbiology.
[9] M. Sekiguchi,et al. Replication of plasmid pSC101 inEscherichia coli K12: Requirement fordnaA function , 1977, Molecular and General Genetics MGG.
[10] S. Lovett. Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences , 2004, Molecular microbiology.
[11] V. Stewart,et al. Identification and expression of genes narL and narX of the nar (nitrate reductase) locus in Escherichia coli K-12 , 1988, Journal of bacteriology.
[12] J. Collins,et al. Construction of a genetic toggle switch in Escherichia coli , 2000, Nature.
[13] R. Miller,et al. One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[14] Peter G Schultz,et al. An Expanded Eukaryotic Genetic Code , 2003, Science.
[15] M K Winson,et al. Construction and analysis of luxCDABE-based plasmid sensors for investigating N-acyl homoserine lactone-mediated quorum sensing. , 1998, FEMS microbiology letters.
[16] H. Riezman,et al. Transcription and translation initiation frequencies of the Escherichia coli lac operon. , 1977, Journal of molecular biology.
[17] Ron Weiss,et al. Cellular computation and communications using engineered genetic regulatory networks , 2001, Cellular Computing.
[18] C. Hutchison,et al. Essential genes of a minimal bacterium. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[19] M. Ehrenberg,et al. Control of rRNA Synthesis in Escherichia coli: a Systems Biology Approach , 2004, Microbiology and Molecular Biology Reviews.
[20] F. Studier,et al. T7 RNA polymerase directed expression of the Escherichia coli rrnB operon. , 1986, The EMBO journal.
[21] A. Aertsen,et al. N-acyl-L-homoserine lactone signal interception by Escherichia coli. , 2006, FEMS microbiology letters.
[22] Robert H. Halstead,et al. Computation structures , 1990, MIT electrical engineering and computer science series.
[23] Jared R. Leadbetter,et al. Dual selection enhances the signaling specificity of a variant of the quorum-sensing transcriptional activator LuxR , 2006, Nature Biotechnology.
[24] Ron Weiss,et al. Engineered Communications for Microbial Robotics , 2000, DNA Computing.
[25] E. Greenberg,et al. Quorum sensing in Vibrio fischeri: probing autoinducer-LuxR interactions with autoinducer analogs , 1996, Journal of bacteriology.
[26] R. Weiss,et al. Directed evolution of a genetic circuit , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[27] J. Keasling,et al. Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model. , 1998, Biotechnology and bioengineering.
[28] Smita S. Patel,et al. Kinetic and thermodynamic basis of promoter strength: multiple steps of transcription initiation by T7 RNA polymerase are modulated by the promoter sequence. , 2002, Biochemistry.
[29] W. Mcallister,et al. Promoter specificity determinants of T7 RNA polymerase. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[30] S. Leibler,et al. Biological rhythms: Circadian clocks limited by noise , 2000, Nature.
[31] R. Goldberger. Autogenous Regulation of Gene Expression , 1974, Science.
[32] D. Endy. Foundations for engineering biology , 2005, Nature.
[33] X Zhang,et al. Mechanism of inhibition of bacteriophage T7 RNA polymerase by T7 lysozyme. , 1997, Journal of molecular biology.
[34] M. Elowitz,et al. A synthetic oscillatory network of transcriptional regulators , 2000, Nature.
[35] W. Mcallister,et al. Studies of promoter recognition and start site selection by T7 RNA polymerase using a comprehensive collection of promoter variants. , 2000, Biochemistry.
[36] P. Murphy,et al. Agrobacterium conjugation and gene regulation by N-acyl-L-homoserine lactones , 1993, Nature.
[37] J. Sadler,et al. Plasmids containing many tandem copies of a synthetic lactose operator. , 1980, Gene.
[38] A. Sonenshein,et al. Mechanism of initiation of transcription by Bacillus subtilis RNA polymerase at several promoters. , 1992, Journal of molecular biology.
[39] A. Pomini,et al. Acyl-homoserine lactones from Erwinia psidii R. IBSBF 435T, a guava phytopathogen (Psidium guajava L.). , 2005, Journal of agricultural and food chemistry.
[40] M. Elowitz,et al. Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[41] J H Lamb,et al. Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. , 1997, Microbiology.
[42] C. Gross,et al. Multiple sigma subunits and the partitioning of bacterial transcription space. , 2003, Annual review of microbiology.
[43] G. Stephanopoulos,et al. Tuning genetic control through promoter engineering. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[44] M. Itaya,et al. Combining two genomes in one cell: stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[45] F. Studier,et al. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. , 1986, Journal of molecular biology.
[46] B. Glick. Metabolic load and heterologous gene expression. , 1995, Biotechnology advances.
[47] R. Weiss,et al. Programmed population control by cell–cell communication and regulated killing , 2004, Nature.
[48] M. Nomura. Engineering of bacterial ribosomes: replacement of all seven Escherichia coli rRNA operons by a single plasmid-encoded operon. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[49] Jan van Duin,et al. Translational standby sites: how ribosomes may deal with the rapid folding kinetics of mRNA. , 2003 .
[50] F. Studier,et al. Creation of a T7 autogene. Cloning and expression of the gene for bacteriophage T7 RNA polymerase under control of its cognate promoter. , 1991, Journal of molecular biology.
[51] K. Nealson. Autoinduction of bacterial luciferase , 1977, Archives of Microbiology.
[52] E. Greenberg,et al. Census and consensus in bacterial ecosystems: the LuxR-LuxI family of quorum-sensing transcriptional regulators. , 1996, Annual review of microbiology.
[53] P. Swain,et al. Stochastic Gene Expression in a Single Cell , 2002, Science.
[54] A. C. Chang,et al. Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid , 1978, Journal of bacteriology.
[55] T. D. Schneider,et al. Sequence logos: a new way to display consensus sequences. , 1990, Nucleic acids research.
[56] M. Casadaban,et al. Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. , 1976, Journal of molecular biology.
[57] C. Condon,et al. Construction and Initial Characterization of Escherichia coli Strains with Few or No Intact Chromosomal rRNA Operons , 1999, Journal of bacteriology.
[58] A. Arkin,et al. Fast, cheap and somewhat in control , 2006, Genome Biology.
[59] H. D. de Boer,et al. Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[60] P. Swain,et al. Gene Regulation at the Single-Cell Level , 2005, Science.
[61] F. Studier,et al. Controlling basal expression in an inducible T7 expression system by blocking the target T7 promoter with lac repressor. , 1991, Journal of molecular biology.
[62] S. Cohen,et al. Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. , 1980, Journal of molecular biology.
[63] M. Chamberlin,et al. New RNA Polymerase from Escherichia coli infected with Bacteriophage T7 , 1970, Nature.
[64] E. Makarov,et al. Transcribing of Escherichia coli genes with mutant T7 RNA polymerases: stability of lacZ mRNA inversely correlates with polymerase speed. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[65] Ian Robertson Sinclair,et al. Sensors and Transducers , 1988 .
[66] J. Chin,et al. A network of orthogonal ribosome·mRNA pairs , 2005, Nature chemical biology.
[67] M. Savageau. Comparison of classical and autogenous systems of regulation in inducible operons , 1974, Nature.
[68] B. Müller-Hill,et al. The three operators of the lac operon cooperate in repression. , 1990, The EMBO journal.
[69] A. Ninfa,et al. Development of Genetic Circuitry Exhibiting Toggle Switch or Oscillatory Behavior in Escherichia coli , 2003, Cell.
[70] F. Neidhardt,et al. Culture Medium for Enterobacteria , 1974, Journal of bacteriology.
[71] C. Martin,et al. Thermodynamic and kinetic measurements of promoter binding by T7 RNA polymerase. , 1996, Biochemistry.
[72] N. Daraselia,et al. NOMAD: a versatile strategy for in vitro DNA manipulation applied to promoter analysis and vector design. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[73] F. Blattner,et al. Emergent Properties of Reduced-Genome Escherichia coli , 2006, Science.
[74] M. Sørensen,et al. Synthesis of proteins in Escherichia coli is limited by the concentration of free ribosomes. Expression from reporter genes does not always reflect functional mRNA levels. , 1993, Journal of molecular biology.
[75] Michael Zuker,et al. Mfold web server for nucleic acid folding and hybridization prediction , 2003, Nucleic Acids Res..
[76] K. Jensen,et al. The RNA chain elongation rate in Escherichia coli depends on the growth rate , 1994, Journal of bacteriology.
[77] J. Steitz,et al. How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. , 1975, Proceedings of the National Academy of Sciences of the United States of America.
[78] K. Nealson,et al. Bacterial bioluminescence: its control and ecological significance , 1979, Microbiological reviews.
[79] M. Smit,et al. Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis. , 1990 .
[80] A. Jacobson,et al. Metabolic Events Occurring During Recovery from Prolonged Glucose Starvation in Escherichia coli , 1968, Journal of bacteriology.
[81] N. Lee,et al. Mechanism of araC autoregulation and the domains of two overlapping promoters, Pc and PBAD, in the L-arabinose regulatory region of Escherichia coli. , 1981, Proceedings of the National Academy of Sciences of the United States of America.
[82] Thomas F Knight. Engineering novel life , 2005, Molecular systems biology.
[83] U. Alon,et al. Negative autoregulation speeds the response times of transcription networks. , 2002, Journal of molecular biology.
[84] R. Rauhut,et al. mRNA degradation in bacteria. , 1999, FEMS microbiology reviews.
[85] H. Bujard,et al. Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. , 1997, Nucleic acids research.
[86] D. Endy,et al. Refactoring bacteriophage T7 , 2005, Molecular systems biology.
[87] Timothy S. Ham,et al. Production of the antimalarial drug precursor artemisinic acid in engineered yeast , 2006, Nature.
[88] U. Alon,et al. Plasticity of the cis-Regulatory Input Function of a Gene , 2006, PLoS biology.
[89] Arkady B. Khodursky,et al. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[90] Thomas F. Knight,et al. Idempotent Vector Design for Standard Assembly of Biobricks , 2003 .
[91] N. W. Davis,et al. The complete genome sequence of Escherichia coli K-12. , 1997, Science.
[92] C. Yanisch-Perron,et al. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. , 1985, Gene.
[93] F. Studier,et al. Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements. , 1983, Journal of molecular biology.
[94] M. Elowitz,et al. Combinatorial Synthesis of Genetic Networks , 2002, Science.
[95] Christopher A. Voigt,et al. Synthetic biology: Engineering Escherichia coli to see light , 2005, Nature.
[96] J E Bailey,et al. Simulations of host–plasmid interactions in Escherichia coli: Copy number, promoter strength, and ribosome binding site strength effects on metabolic activity and plasmid gene expression , 1987, Biotechnology and bioengineering.