Collective Oscillation Period of Inter-Coupled Biological Negative Cyclic Feedback Oscillators

A number of biological rhythms originate from networks comprised of multiple cellular oscillators. But analytical results are still lacking on the collective oscillation period of inter-coupled gene regulatory oscillators, which, as has been reported, may be different from that of an autonomous oscillator. Based on cyclic feedback oscillators, we analyze the collective oscillation pattern of coupled cellular oscillators. First we give a condition under which the oscillator network exhibits oscillatory and synchronized behavior. Then we estimate the collective oscillation period based on a novel multivariable harmonic balance technique. Analytical results are derived in terms of biochemical parameters, thus giving insight into the basic mechanism of biological oscillation and providing guidance in synthetic biology design.

[1]  T. Glad,et al.  On Diffusion Driven Oscillations in Coupled Dynamical Systems , 1999 .

[2]  John J. Tyson,et al.  The Dynamics of Feedback Control Circuits in Biochemical Pathways , 1978 .

[3]  M. A. Henson,et al.  A molecular model for intercellular synchronization in the mammalian circadian clock. , 2007, Biophysical journal.

[4]  W. J. Freeman,et al.  Alan Turing: The Chemical Basis of Morphogenesis , 1986 .

[5]  Yongqiang Wang,et al.  The collective oscillation period of inter-coupled Goodwin oscillators , 2012, 2012 IEEE 51st IEEE Conference on Decision and Control (CDC).

[6]  P. Olver Nonlinear Systems , 2013 .

[7]  Steven H. Strogatz,et al.  Cellular Construction of a Circadian Clock: Period Determination in the Suprachiasmatic Nuclei , 1997, Cell.

[8]  J. Tyson,et al.  Periodic enzyme synthesis: reconsideration of the theory of oscillatory repression. , 1979, Journal of theoretical biology.

[9]  Yongqiang Wang,et al.  Intercellular Delay Regulates the Collective Period of Repressively Coupled Gene Regulatory Oscillator Networks , 2014, IEEE Transactions on Automatic Control.

[10]  J. Tyson,et al.  Design principles of biochemical oscillators , 2008, Nature Reviews Molecular Cell Biology.

[11]  J. Griffith Mathematics of cellular control processes. II. Positive feedback to one gene. , 1968, Journal of theoretical biology.

[12]  Shinji Hara,et al.  Biochemical oscillations in delayed negative cyclic feedback: Existence and profiles , 2013, Autom..

[13]  P. Tass,et al.  Macroscopic entrainment of periodically forced oscillatory ensembles. , 2011, Progress in biophysics and molecular biology.

[14]  Shinji Hara,et al.  Existence criteria of periodic oscillations in cyclic gene regulatory networks , 2011, Autom..

[15]  J. Tyson On the existence of oscillatory solutions in negative feedback cellular control processes , 1975 .

[16]  Reza Olfati-Saber,et al.  Consensus and Cooperation in Networked Multi-Agent Systems , 2007, Proceedings of the IEEE.

[17]  Tetsuya Iwasaki,et al.  Multivariable harmonic balance for central pattern generators , 2008, Autom..

[18]  J. Tyson,et al.  Computational Cell Biology , 2010 .

[19]  Judith A. Gilbride,et al.  From the Editorʼs , 2008 .

[20]  G. Stephanopoulos,et al.  Metabolic Engineering: Principles And Methodologies , 1998 .

[21]  M. Khammash,et al.  Repressilators and promotilators: loop dynamics in synthetic gene networks , 2005, Proceedings of the 2005, American Control Conference, 2005..

[22]  Frank Jülicher,et al.  Intercellular Coupling Regulates the Period of the Segmentation Clock , 2010, Current Biology.

[23]  I Fischer,et al.  Synchronization of delay-coupled oscillators: a study of semiconductor lasers. , 2005, Physical review letters.

[24]  Stephanie R. Taylor,et al.  Synchrony and entrainment properties of robust circadian oscillators , 2008, Journal of The Royal Society Interface.

[25]  Rodolphe Sepulchre,et al.  Global State Synchronization in Networks of Cyclic Feedback Systems , 2012, IEEE Transactions on Automatic Control.

[26]  Charles R. Johnson,et al.  Matrix analysis , 1985, Statistical Inference for Engineers and Data Scientists.

[27]  L. Ljung,et al.  Control theory : multivariable and nonlinear methods , 2000 .

[28]  A. M. Turing,et al.  The chemical basis of morphogenesis , 1952, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences.

[29]  Axel Hunding,et al.  Limit-cycles in enzyme-systems with nonlinear negative feedback , 1974, Biophysics of structure and mechanism.

[30]  N. Macdonald Time lags in biological models , 1978 .

[31]  J. Griffith,et al.  Mathematics of cellular control processes. I. Negative feedback to one gene. , 1968, Journal of theoretical biology.

[32]  P. Rapp,et al.  Analysis of biochemical phase shift oscillators by a harmonic balancing technique , 1976, Journal of mathematical biology.