Evidence for a Coiled-coil Interaction Mode of Disordered Proteins from Bacterial Type III Secretion Systems*
暂无分享,去创建一个
Michael Kokkinidis | M. Kokkinidis | Spyridoula N Charova | Anastasia D Gazi | Marina Bastaki | Eirini A Gkougkoulia | Efthymios A Kapellios | Nicholas J Panopoulos | N. Panopoulos | Marina N Bastaki | E. Kapellios | Anastasia D. Gazi
[1] Jaime Prilusky,et al. FoldIndex copyright: a simple tool to predict whether a given protein sequence is intrinsically unfolded , 2005, Bioinform..
[2] N. Panopoulos,et al. Gene cluster of Pseudomonas syringae pv. "phaseolicola" controls pathogenicity of bean plants and hypersensitivity of nonhost plants , 1986, Journal of bacteriology.
[3] D. Tsernoglou,et al. Restored heptad pattern continuity does not alter the folding of a four-α-helix bundle , 1994, Nature Structural Biology.
[4] M. Sternberg,et al. Enhanced genome annotation using structural profiles in the program 3D-PSSM. , 2000, Journal of molecular biology.
[5] S. Hitchcock-DeGregori,et al. Dual requirement for flexibility and specificity for binding of the coiled-coil tropomyosin to its target, actin. , 2006, Structure.
[6] Andrew J. Miles,et al. A reference database for circular dichroism spectroscopy covering fold and secondary structure space , 2006, Bioinform..
[7] A. Lupas,et al. Predicting coiled coils from protein sequences , 1991, Science.
[8] K. Gekko,et al. Secondary-structure analysis of proteins by vacuum-ultraviolet circular dichroism spectroscopy. , 2004, Journal of biochemistry.
[9] D T Jones,et al. Protein secondary structure prediction based on position-specific scoring matrices. , 1999, Journal of molecular biology.
[10] K. Namba,et al. Distinct roles of the FliI ATPase and proton motive force in bacterial flagellar protein export , 2008, Nature.
[11] K. Hughes,et al. Energy source of flagellar type III secretion , 2008, Nature.
[12] H. Dyson,et al. Intrinsically unstructured proteins and their functions , 2005, Nature Reviews Molecular Cell Biology.
[13] H. Dyson,et al. Mechanism of coupled folding and binding of an intrinsically disordered protein , 2007, Nature.
[14] G. Fraser,et al. An escort mechanism for cycling of export chaperones during flagellum assembly , 2006, Proceedings of the National Academy of Sciences.
[15] Luis Mateus Rocha,et al. Singular value decomposition and principal component analysis , 2003 .
[16] M. Kataoka,et al. Chain-like conformation of heat-denatured ribonuclease A and cytochrome c as evidenced by solution X-ray scattering. , 1998, Folding & design.
[17] Christopher M. Bailey,et al. Evolutionary links between FliH/YscL‐like proteins from bacterial type III secretion systems and second‐stalk components of the FoF1 and vacuolar ATPases , 2006, Protein science : a publication of the Protein Society.
[18] K. Namba,et al. Interactions between C ring proteins and export apparatus components: a possible mechanism for facilitating type III protein export , 2006, Molecular microbiology.
[19] Christopher M. Bailey,et al. Bioinformatics, genomics and evolution of non-flagellar type-III secretion systems: a Darwinian perspective. , 2005, FEMS microbiology reviews.
[20] Vincent A. Fischetti,et al. Identifying Periodic Occurrences of a Template with Applications to Protein Structure , 1993, Inf. Process. Lett..
[21] O. Glatter,et al. 19 – Small-Angle X-ray Scattering , 1973 .
[22] N. Moran,et al. Molecular Interactions between Bacterial Symbionts and Their Hosts , 2006, Cell.
[23] S. Moore,et al. Molecular Basis of the Interaction between the Flagellar Export Proteins FliI and FliH from Helicobacter pylori* , 2006, Journal of Biological Chemistry.
[24] R. Angeletti,et al. Ultracentrifuge and circular dichroism studies of folding equilibria in a retro GCN4-like leucine zipper. , 2000, Biophysical journal.
[25] Paul Troisfontaines,et al. Type III secretion: more systems than you think. , 2005, Physiology.
[26] P. Vachette,et al. Heat-induced unfolding of neocarzinostatin, a small all-beta protein investigated by small-angle X-ray scattering. , 2001, Journal of molecular biology.
[27] Marc S. Cortese,et al. Flexible nets , 2005, The FEBS journal.
[28] V. Uversky,et al. Why are “natively unfolded” proteins unstructured under physiologic conditions? , 2000, Proteins.
[29] Dmitri I. Svergun,et al. PRIMUS: a Windows PC-based system for small-angle scattering data analysis , 2003 .
[30] Y H Chen,et al. Determination of the helix and beta form of proteins in aqueous solution by circular dichroism. , 1974, Biochemistry.
[31] K. Namba,et al. Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits , 2007, Proceedings of the National Academy of Sciences.
[32] A. Collmer,et al. Identification of Pseudomonas syringae pv. syringae 61 Type III Secretion System Hrp Proteins That Can Travel the Type III Pathway and Contribute to the Translocation of Effector Proteins into Plant Cells , 2007, Journal of bacteriology.
[33] V. Uversky,et al. Association of partially‐folded intermediates of staphylococcal nuclease induces structure and stability , 2008, Protein science : a publication of the Protein Society.
[34] G. Frankel,et al. Coiled‐coil proteins associated with type III secretion systems: a versatile domain revisited , 2002, Molecular microbiology.
[35] A. Holtzer,et al. The use of spectral decomposition via the convex constraint algorithm in interpreting the CD‐observed unfolding transitions of C coils , 1995 .
[36] M. Kokkinidis,et al. Conserved features of type III secretion , 2004, Cellular microbiology.
[37] Dmitri I. Svergun,et al. Upgrade of the small-angle X-ray scattering beamline X33 at the European Molecular Biology Laboratory, Hamburg , 2007 .
[38] R. Macnab,et al. Interactions of FliJ with the Salmonella Type III Flagellar Export Apparatus , 2003, Journal of bacteriology.
[39] Z. Gugolya,et al. Interaction of FliS flagellar chaperone with flagellin , 2006, FEBS letters.
[40] M. Kokkinidis,et al. Relationships between sequence and structure for the four-alpha-helix bundle tertiary motif in proteins. , 1992, Protein engineering.
[41] S. Phillips,et al. Structure of HrcQB-C, a conserved component of the bacterial type III secretion systems , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[42] T. Noguti,et al. Protein anatomy: spontaneous formation of filamentous helical structures from the N-terminal module of barnase. , 1993, Biochemistry.
[43] John M. Walker,et al. The Proteomics Protocols Handbook , 2005, Humana Press.
[44] C. Hill,et al. Crystal Structure of the Flagellar Rotor Protein FliN from Thermotoga maritima , 2005, Journal of bacteriology.
[45] N. Greenfield. Using circular dichroism collected as a function of temperature to determine the thermodynamics of protein unfolding and binding interactions , 2006, Nature Protocols.
[46] Vladimir N Uversky,et al. What does it mean to be natively unfolded? , 2002, European journal of biochemistry.
[47] Wolfgang Jahnke,et al. Molecular basis of coiled-coil formation , 2007, Proceedings of the National Academy of Sciences.
[48] Mark A. Schmitz,et al. Semirational design of Jun-Fos coiled coils with increased affinity: Universal implications for leucine zipper prediction and design. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[49] M. Blackledge,et al. Structural characterization of flexible proteins using small-angle X-ray scattering. , 2007, Journal of the American Chemical Society.
[50] B. Finlay,et al. Structural analysis of a prototypical ATPase from the type III secretion system , 2007, Nature Structural &Molecular Biology.
[51] Abhishek K. Jha,et al. Statistical coil model of the unfolded state: resolving the reconciliation problem. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[52] V. Uversky,et al. Protein folding revisited. A polypeptide chain at the folding – misfolding – nonfolding cross-roads: which way to go? , 2003, Cellular and Molecular Life Sciences CMLS.
[53] D. Svergun,et al. A direct indirect method of small-angle scattering data treatment , 1993 .
[54] Gad M. Landau,et al. Identifying periodic occurences of a template with applications to protein structure: Information Processing Letters 45 (1) (25 January 1993) 11-18 , 1993 .