Maximum likelihood fitting of the Poisson lognormal distribution

In this paper some properties and analytic expressions regarding the Poisson lognormal distribution such as moments, maximum likelihood function and related derivatives are discussed. The author provides a sharp approximation of the integrals related to the Poisson lognormal probabilities and analyzes the choice of the initial values in the fitting procedure. Based on these he describes a new procedure for carrying out the maximum likelihood fitting of the truncated Poisson lognormal distribution. The method and results are illustrated on real data. The computer program for calculations is freely available.

[1]  A. Iserles Numerical recipes in C—the art of scientific computing , by W. H. Press, B. P. Flannery, S. A. Teukolsky and W. T. Vetterling. Pp 735. £27·50. 1988. ISBN 0-521-35465-X (Cambridge University Press) , 1989, The Mathematical Gazette.

[2]  Kevin J. Gaston,et al.  The lognormal distribution is not an appropriate null hypothesis for the species–abundance distribution , 2005 .

[3]  R. Fisher,et al.  The Relation Between the Number of Species and the Number of Individuals in a Random Sample of an Animal Population , 1943 .

[4]  P. Grundy THE EXPECTED FREQUENCIES IN A SAMPLE OF AN ANIMAL POPULATION IN WHICH THE ABUNDANCES OF SPECIES ARE LOG-NORMALLY DISTRIBUTED. PART I , 1951 .

[5]  S. Engen A dynamic and spatial model with migration generating the log-Gaussian field of population densities. , 2001, Mathematical biosciences.

[6]  N. S. Urquhart,et al.  Patterns in the Balance of Nature , 1966 .

[7]  Ganapati P. Patil,et al.  Ecological Diversity in Theory and Practice. , 1980 .

[8]  F. W. Preston The Commonness, And Rarity, of Species , 1948 .

[9]  M. Bulmer On Fitting the Poisson Lognormal Distribution to Species-Abundance Data , 1974 .

[10]  R. A. Kempton,et al.  Log-Series and Log-Normal Parameters as Diversity Discriminants for the Lepidoptera , 1974 .

[11]  A. Steven Corbet THE DISTRIBUTION OF BUTTERFLIES IN THE MALAY PENINSULA (LEPID.) , 2009 .

[12]  R. Macarthur ON THE RELATIVE ABUNDANCE OF BIRD SPECIES. , 1957, Proceedings of the National Academy of Sciences of the United States of America.

[13]  D. Marquardt An Algorithm for Least-Squares Estimation of Nonlinear Parameters , 1963 .

[14]  R. Lande,et al.  Population dynamic models generating the lognormal species abundance distribution. , 1996, Mathematical biosciences.

[15]  E. Crow,et al.  Lognormal Distributions: Theory and Applications , 1987 .