FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
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J. Dopazo | I. Medina | J. Tárraga | D. Montaner | F. Al-Shahrour | Eva Alloza | P. Minguez | Ignacio Medina | Joaquín Tárraga
[1] J. Dopazo. Functional interpretation of microarray experiments. , 2006, Omics : a journal of integrative biology.
[2] Susmita Datta,et al. Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes , 2006, BMC Bioinformatics.
[3] Joaquín Dopazo,et al. BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments , 2006, Nucleic Acids Res..
[4] Joaquín Dopazo,et al. Next station in microarray data analysis: GEPAS , 2006, Nucleic Acids Res..
[5] Baldomero Oliva,et al. PIANA: protein interactions and network analysis , 2006, Bioinform..
[6] E. Ukkonen,et al. Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity , 2006, Cell.
[7] K. S. Deshpande,et al. Human protein reference database—2006 update , 2005, Nucleic Acids Res..
[8] Stijn van Dongen,et al. miRBase: microRNA sequences, targets and gene nomenclature , 2005, Nucleic Acids Res..
[9] Obi L. Griffith,et al. cisRED: a database system for genome-scale computational discovery of regulatory elements , 2005, Nucleic Acids Res..
[10] Cathy H. Wu,et al. The Universal Protein Resource (UniProt): an expanding universe of protein information , 2005, Nucleic Acids Res..
[11] Dmitrij Frishman,et al. MIPS: analysis and annotation of proteins from whole genomes in 2005 , 2006, Nucleic Acids Res..
[12] S. L. Wong,et al. Towards a proteome-scale map of the human protein–protein interaction network , 2005, Nature.
[13] H. Lehrach,et al. A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome , 2005, Cell.
[14] Purvesh Khatri,et al. Ontological analysis of gene expression data: current tools, limitations, and open problems , 2005, Bioinform..
[15] Baldomero Oliva,et al. Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships , 2005, Bioinform..
[16] Joaquín Dopazo,et al. Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information , 2005, Bioinform..
[17] A. Valencia,et al. Text-mining and information-retrieval services for molecular biology , 2005, Genome Biology.
[18] Stanley N Cohen,et al. Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[19] Joaquín Dopazo,et al. Ontologies and Functional Genomics , 2005, Data Analysis and Visualization in Genomics and Proteomics.
[20] H. Horvitz,et al. MicroRNA expression profiles classify human cancers , 2005, Nature.
[21] D. Pinkel,et al. Array comparative genomic hybridization and its applications in cancer , 2005, Nature Genetics.
[22] Joaquín Dopazo,et al. Data Analysis and Visualization in Genomics and Proteomics , 2005 .
[23] Ronnie Driver,et al. Biostatistics: a Methodology for the Health Sciences , 2005 .
[24] Cathy H. Wu,et al. InterPro, progress and status in 2005 , 2004, Nucleic Acids Res..
[25] Robert Gentleman,et al. Network structures and algorithms in Bioconductor , 2005, Bioinform..
[26] B. Palsson,et al. The evolution of molecular biology into systems biology , 2004, Nature Biotechnology.
[27] E. Kunkel. Systems biology in drug discovery , 2004, Nature Biotechnology.
[28] Joaquín Dopazo,et al. FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes , 2004, Bioinform..
[29] D. Bartel. MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.
[30] Adam J. Smith,et al. The Database of Interacting Proteins: 2004 update , 2004, Nucleic Acids Res..
[31] Susumu Goto,et al. The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..
[32] Douglas A. Hosack,et al. Identifying biological themes within lists of genes with EASE , 2003, Genome Biology.
[33] Brad T. Sherman,et al. DAVID: Database for Annotation, Visualization, and Integrated Discovery , 2003, Genome Biology.
[34] M. Hofker. Faculty Opinions recommendation of PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. , 2003 .
[35] Joaquín Dopazo,et al. GEPAS: a web-based resource for microarray gene expression data analysis , 2003, Nucleic Acids Res..
[36] Ian M. Donaldson,et al. BIND: the Biomolecular Interaction Network Database , 2001, Nucleic Acids Res..
[37] P. Khatri,et al. Global functional profiling of gene expression. , 2003, Genomics.
[38] May D. Wang,et al. GoMiner: a resource for biological interpretation of genomic and proteomic data , 2003, Genome Biology.
[39] P. Khatri,et al. Profiling gene expression using onto-express. , 2002, Genomics.
[40] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[41] Xin Chen,et al. TRANSFAC: an integrated system for gene expression regulation , 2000, Nucleic Acids Res..
[42] Miguel A. Andrade-Navarro,et al. Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families , 1998, Bioinform..
[43] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .