Non‐Coding RNA Analysis Using the Rfam Database
暂无分享,去创建一个
Alex Bateman | Eric P. Nawrocki | Anton I. Petrov | Eric P Nawrocki | Ioanna Kalvari | Joanna Argasinska | Robert D Finn | Anton I Petrov | Natalia Quinones-Olvera | R. Finn | A. Bateman | Ioanna Kalvari | Joanna Argasinska | Natalia Quinones-Olvera | Natalia Quinones-Olvera
[1] Zasha Weinberg,et al. Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions , 2017, Nucleic acids research.
[2] R. Breaker,et al. Riboswitch diversity and distribution , 2017, RNA.
[3] Lars Barquist,et al. Building non-coding RNA families , 2012, 1206.4087.
[4] Scott Federhen,et al. The NCBI Taxonomy database , 2011, Nucleic Acids Res..
[5] A. Quinlan. BEDTools: The Swiss‐Army Tool for Genome Feature Analysis , 2014, Current protocols in bioinformatics.
[6] Robert D. Finn,et al. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families , 2017, Nucleic Acids Res..
[7] Sean R. Eddy,et al. Rfam: an RNA family database , 2003, Nucleic Acids Res..
[8] P. Gardner,et al. Annotating RNA motifs in sequences and alignments , 2014, bioRxiv.
[9] Alessandro Vullo,et al. Ensembl 2017 , 2016, Nucleic Acids Res..
[10] Robert D. Finn,et al. Rfam: Wikipedia, clans and the “decimal” release , 2010, Nucleic Acids Res..
[11] Sebastian Will,et al. RNAalifold: improved consensus structure prediction for RNA alignments , 2008, BMC Bioinformatics.
[12] J. Steitz,et al. The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones , 2014, Cell.
[13] Eric P. Nawrocki,et al. Annotating functional RNAs in genomes using Infernal. , 2014, Methods in molecular biology.
[14] F. Narberhaus,et al. Bacterial RNA thermometers: molecular zippers and switches , 2012, Nature Reviews Microbiology.
[15] Alex Bateman,et al. RNAcentral: a comprehensive database of non-coding RNA sequences , 2016, Nucleic acids research.
[16] Robert D. Finn,et al. Rfam 12.0: updates to the RNA families database , 2014, Nucleic Acids Res..
[17] Sean R. Eddy,et al. Infernal 1.1: 100-fold faster RNA homology searches , 2013, Bioinform..
[18] S. Eddy,et al. A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs , 2016, Nature Methods.
[19] Daniel Lai,et al. R-chie: a web server and R package for visualizing RNA secondary structures , 2012, Nucleic acids research.
[20] The RNAcentral Consortium. RNAcentral: a comprehensive database of non-coding RNA sequences , 2016, Nucleic Acids Res..