A novel picoliter droplet array for parallel real-time polymerase chain reaction based on double-inkjet printing.

We developed and characterized a novel picoliter droplet-in-oil array generated by a double-inkjet printing method on a uniform hydrophobic silicon chip specifically designed for quantitative polymerase chain reaction (qPCR) analysis. Double-inkjet printing was proposed to efficiently address the evaporation issues of picoliter droplets during array generation on a planar substrate without the assistance of a humidifier or glycerol. The method utilizes piezoelectric inkjet printing equipment to precisely eject a reagent droplet into an oil droplet, which had first been dispensed on a hydrophobic and oleophobic substrate. No evaporation, random movement, or cross-contamination was observed during array fabrication and thermal cycling. We demonstrated the feasibility and effectiveness of this novel double-inkjet method for real-time PCR analysis. This method can readily produce multivolume droplet-in-oil arrays with volume variations ranging from picoliters to nanoliters. This feature would be useful for simultaneous multivolume PCR experiments aimed at wide and tunable dynamic ranges. These double-inkjet-based picoliter droplet arrays may have potential for multiplexed applications that require isolated containers for single-cell cultures, single molecular enzymatic assays, or digital PCR and provide an alternative option for generating droplet arrays on planar substrates without chemical patterning.

[1]  Kevin D Dorfman,et al.  Automated microdroplet platform for sample manipulation and polymerase chain reaction. , 2006, Analytical chemistry.

[2]  M. D. Chamberlain,et al.  A digital microfluidic method for multiplexed cell-based apoptosis assays. , 2012, Lab on a chip.

[3]  Benjamin J Hindson,et al.  On-chip, real-time, single-copy polymerase chain reaction in picoliter droplets. , 2007, Analytical chemistry.

[4]  R. Fair,et al.  Electrowetting-based actuation of liquid droplets for microfluidic applications , 2000 .

[5]  Todd Munson,et al.  Theoretical design and analysis of multivolume digital assays with wide dynamic range validated experimentally with microfluidic digital PCR. , 2011, Analytical chemistry.

[6]  N. Friedman,et al.  Stochastic protein expression in individual cells at the single molecule level , 2006, Nature.

[7]  D. Weitz,et al.  Geometrically mediated breakup of drops in microfluidic devices. , 2003, Physical review letters.

[8]  Bruno Pignataro,et al.  Luminometric sub-nanoliter droplet-to-droplet array (LUMDA) and its application to drug screening by phase I metabolism enzymes. , 2013, Lab on a chip.

[9]  H. Morgan,et al.  Programmable large area digital microfluidic array with integrated droplet sensing for bioassays. , 2012, Lab on a chip.

[10]  Toshiro Higuchi,et al.  Droplet formation in a microchannel network. , 2002, Lab on a chip.

[11]  P. Neužil,et al.  Ultra fast miniaturized real-time PCR: 40 cycles in less than six minutes , 2006, Nucleic acids research.

[12]  Bo Huang,et al.  Counting Low-Copy Number Proteins in a Single Cell , 2007, Science.

[13]  S. Quake,et al.  Dynamic pattern formation in a vesicle-generating microfluidic device. , 2001, Physical review letters.

[14]  Miss A.O. Penney (b) , 1974, The New Yale Book of Quotations.

[15]  V. Srinivasan,et al.  Heterogeneous immunoassays using magnetic beads on a digital microfluidic platform. , 2008, Lab on a chip.

[16]  Liang Li,et al.  Nanoliter microfluidic hybrid method for simultaneous screening and optimization validated with crystallization of membrane proteins , 2006, Proceedings of the National Academy of Sciences.

[17]  Richard B. Fair,et al.  Digital microfluidics: is a true lab-on-a-chip possible? , 2007 .

[18]  S. Lutz-Bonengel,et al.  Low-volume amplification on chemically structured chips using the PowerPlex16 DNA amplification kit , 2005, International Journal of Legal Medicine.

[19]  Anupam Singhal,et al.  Megapixel digital PCR , 2011, Nature Methods.

[20]  T. Haaf,et al.  Multiplex RT-PCR Expression Analysis of Developmentally Important Genes in Individual Mouse Preimplantation Embryos and Blastomeres1 , 2009, Biology of reproduction.

[21]  R. Stephenson A and V , 1962, The British journal of ophthalmology.

[22]  A. Wixforth,et al.  Planar chip device for PCR and hybridization with surface acoustic wave pump. , 2005, Lab on a chip.

[23]  Andrew G. Glen,et al.  APPL , 2001 .

[24]  Bing Sun,et al.  Multiplexed quantification of nucleic acids with large dynamic range using multivolume digital RT-PCR on a rotational SlipChip tested with HIV and hepatitis C viral load. , 2011, Journal of the American Chemical Society.

[25]  Hiroyuki Noji,et al.  A single-molecule enzymatic assay in a directly accessible femtoliter droplet array. , 2010, Lab on a chip.

[26]  J. Lammertyn,et al.  A versatile electrowetting-based digital microfluidic platform for quantitative homogeneous and heterogeneous bio-assays , 2011 .

[27]  Aaas News,et al.  Book Reviews , 1893, Buffalo Medical and Surgical Journal.

[28]  Anubhav Tripathi,et al.  Real-time droplet DNA amplification with a new tablet platform. , 2012, Analytical chemistry.

[29]  David Needham,et al.  Functional bionetworks from nanoliter water droplets. , 2007, Journal of the American Chemical Society.

[30]  A. Theberge,et al.  Microdroplets in microfluidics: an evolving platform for discoveries in chemistry and biology. , 2010, Angewandte Chemie.

[31]  H. Stone,et al.  Formation of dispersions using “flow focusing” in microchannels , 2003 .

[32]  C. Radke,et al.  Protein adsorption at the oil/water interface: characterization of adsorption kinetics by dynamic interfacial tension measurements. , 1999, Biophysical chemistry.

[33]  Gregory W Faris,et al.  Optically addressed droplet-based protein assay. , 2005, Journal of the American Chemical Society.

[34]  Axel Schumacher,et al.  A high-throughput DNA methylation analysis of a single cell , 2011, Nucleic acids research.

[35]  Q. Fang,et al.  Nanolitre droplet array for real time reverse transcription polymerase chain reaction. , 2011, Lab on a chip.

[36]  Neil Genzlinger A. and Q , 2006 .

[37]  R. Zare,et al.  Chemical cytometry on a picoliter-scale integrated microfluidic chip. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[38]  Siarhei Vishniakou,et al.  Petri dish PCR: laser-heated reactions in nanoliter droplet arrays. , 2009, Lab on a chip.

[39]  Yi Zhang,et al.  Catching bird flu in a droplet , 2007, Nature Medicine.