Expression profiling of Clostridium thermocellum B8 during the deconstruction of sugarcane bagasse and straw

[1]  S. Kengen,et al.  Heterologous expression and characterization of a putative glycoside hydrolase family 43 arabinofuranosidase from Clostridium thermocellum B8. , 2018, Enzyme and microbial technology.

[2]  L. Trindade,et al.  A tandem CBM25 domain of α-amylase from Microbacterium aurum as potential tool for targeting proteins to starch granules during starch biosynthesis , 2017, BMC Biotechnology.

[3]  V. Zverlov,et al.  Comparative characterization of all cellulosomal cellulases from Clostridium thermocellum reveals high diversity in endoglucanase product formation essential for complex activity , 2017, Biotechnology for Biofuels.

[4]  V. Zverlov,et al.  Identification of endoxylanase XynE from Clostridium thermocellum as the first xylanase of glycoside hydrolase family GH141 , 2017, Scientific Reports.

[5]  Richard J. Giannone,et al.  Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells , 2017, Scientific Reports.

[6]  B. Quirino,et al.  Growth and expression of relevant metabolic genes of Clostridium thermocellum cultured on lignocellulosic residues , 2017, Journal of Industrial Microbiology & Biotechnology.

[7]  B. Quirino,et al.  Characterization of Clostridium thermocellum (B8) secretome and purified cellulosomes for lignocellulosic biomass degradation. , 2017, Enzyme and microbial technology.

[8]  A. Goyal,et al.  A novel member of family 30 glycoside hydrolase subfamily 8 glucuronoxylan endo-β-1,4-xylanase (CtXynGH30) from Clostridium thermocellum orchestrates catalysis on arabinose decorated xylans , 2016 .

[9]  Qi Xu,et al.  Dramatic performance of Clostridium thermocellum explained by its wide range of cellulase modalities , 2016, Science Advances.

[10]  E. Bayer,et al.  Decoding Biomass-Sensing Regulons of Clostridium thermocellum Alternative Sigma-I Factors in a Heterologous Bacillus subtilis Host System , 2016, PloS one.

[11]  K. Cho,et al.  The Mechanisms of Virulence Regulation by Small Noncoding RNAs in Low GC Gram-Positive Pathogens , 2015, International journal of molecular sciences.

[12]  E. Noronha,et al.  Evaluation of plant cell wall degrading enzyme production by Clostridium thermocellum B8 in the presence of raw agricultural wastes , 2015 .

[13]  L. Lynd,et al.  Three cellulosomal xylanase genes inClostridium thermocellum are regulated by both vegetative SigA (σA) and alternative SigI6 (σI6) factors , 2015, FEBS letters.

[14]  Tsutomu Tanaka,et al.  Synergistic effect and application of xylanases as accessory enzymes to enhance the hydrolysis of pretreated bagasse. , 2015, Enzyme and microbial technology.

[15]  A. Goyal,et al.  Role of Pectinolytic Enzymes Identified in Clostridium thermocellum Cellulosome , 2015, PloS one.

[16]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[17]  Luiziana Ferreira Silva,et al.  Perspectives on the production of polyhydroxyalkanoates in biorefineries associated with the production of sugar and ethanol. , 2014, International journal of biological macromolecules.

[18]  P. Somervuo,et al.  Quality Control and Preprocessing , 2014 .

[19]  Dan Close,et al.  The emergence of Clostridium thermocellum as a high utility candidate for consolidated bioprocessing applications , 2014, Front. Chem..

[20]  Michael E. Himmel,et al.  Comparison of transcriptional profiles of Clostridium thermocellum grown on cellobiose and pretreated yellow poplar using RNA-Seq , 2014, Front. Microbiol..

[21]  Mustafa H Syed,et al.  Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass , 2013, Biotechnology for Biofuels.

[22]  B. Tjaden,et al.  Computational analysis of bacterial RNA-Seq data , 2013, Nucleic acids research.

[23]  Hélène Touzet,et al.  SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data , 2012, Bioinform..

[24]  E. Bayer,et al.  Improved Thermostability of Clostridium thermocellum Endoglucanase Cel8A by Using Consensus-Guided Mutagenesis , 2012, Applied and Environmental Microbiology.

[25]  B. Pletschke,et al.  Lime pretreatment of sugar beet pulp and evaluation of synergy between ArfA, ManA and XynA from Clostridium cellulovorans on the pretreated substrate , 2011, 3 Biotech.

[26]  Bruce E Dale,et al.  Deconstruction of lignocellulosic biomass to fuels and chemicals. , 2011, Annual review of chemical and biomolecular engineering.

[27]  Marcel Martin Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .

[28]  M. Himmel,et al.  Structure of CBM4 from Clostridium thermocellum cellulase K. , 2011, Acta crystallographica. Section F, Structural biology and crystallization communications.

[29]  B. Pletschke,et al.  Effect of alkaline pre-treatment on enzyme synergy for efficient hemicellulose hydrolysis in sugarcane bagasse. , 2011, Bioresource technology.

[30]  Robert A. Edwards,et al.  Quality control and preprocessing of metagenomic datasets , 2011, Bioinform..

[31]  M. Himmel,et al.  Structure of CBM 4 from Clostridium thermocellum cellulase , 2011 .

[32]  E. Bayer,et al.  Glycoside hydrolases as components of putative carbohydrate biosensor proteins in Clostridium thermocellum , 2011, Journal of Industrial Microbiology & Biotechnology.

[33]  Jonathan R Mielenz,et al.  Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation , 2011, BMC Microbiology.

[34]  E. Bayer,et al.  Clostridium thermocellum cellulosomal genes are regulated by extracytoplasmic polysaccharides via alternative sigma factors , 2010, Proceedings of the National Academy of Sciences.

[35]  Francesco Cherubini,et al.  The biorefinery concept: Using biomass instead of oil for producing energy and chemicals , 2010 .

[36]  E. Bayer,et al.  The unique set of putative membrane-associated anti-sigma factors in Clostridium thermocellum suggests a novel extracellular carbohydrate-sensing mechanism involved in gene regulation. , 2010, FEMS microbiology letters.

[37]  V. Martin,et al.  Global View of the Clostridium thermocellum Cellulosome Revealed by Quantitative Proteomic Analysis , 2007, Journal of bacteriology.

[38]  V. Zverlov,et al.  Two noncellulosomal cellulases of Clostridium thermocellum, Cel9I and Cel48Y, hydrolyse crystalline cellulose synergistically. , 2007, FEMS microbiology letters.

[39]  Gholson J. Lyon,et al.  Peptide signaling in Staphylococcus aureus and other Gram-positive bacteria , 2004, Peptides.

[40]  J. Zeikus,et al.  Cellulolytic and physiological properties of Clostridium thermocellum , 1977, Archives of Microbiology.

[41]  E. Bayer,et al.  CelI, a Noncellulosomal Family 9 Enzyme from Clostridium thermocellum, Is a Processive Endoglucanase That Degrades Crystalline Cellulose , 2003, Journal of bacteriology.

[42]  Michael P. Sheetz,et al.  Single pilus motor forces exceed 100 pN , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[43]  I. S. Pretorius,et al.  Microbial Cellulose Utilization: Fundamentals and Biotechnology , 2002, Microbiology and Molecular Biology Reviews.

[44]  W. Schwarz The cellulosome and cellulose degradation by anaerobic bacteria , 2001, Applied Microbiology and Biotechnology.

[45]  I. Kataeva,et al.  Feruloyl Esterase Activity of the Clostridium thermocellum Cellulosome Can Be Attributed to Previously Unknown Domains of XynY and XynZ , 2000, Journal of bacteriology.

[46]  I. Kataeva,et al.  Duplication and Recombination : Evidence for Gene Thermocellum Clostridium Cellulosome Component of Cellulase Gene Encoding Celk, a Major Cloning and Sequence Analysis of a New , 1999 .

[47]  K. Sakka,et al.  Nucleotide sequences of two contiguous and highly homologous xylanase genes xynA and xynB and characterization of XynA from Clostridium thermocellum , 1999, Applied Microbiology and Biotechnology.

[48]  E. Bayer,et al.  Cellulosomes-structure and ultrastructure. , 1998, Journal of structural biology.

[49]  J. Wu,et al.  Exoglucanase activities of the recombinant Clostridium thermocellum CelS, a major cellulosome component , 1995, Journal of bacteriology.

[50]  E. Bayer,et al.  The cellulosome--a treasure-trove for biotechnology. , 1994, Trends in biotechnology.

[51]  V. Akimenko,et al.  Clostridium thermocellum β-glucosidases A and B: Purification, properties, localization, and regulation of biosynthesis , 1992 .

[52]  O. Grépinet,et al.  Nucleotide sequence and deletion analysis of the xylanase gene (xynZ) of Clostridium thermocellum , 1988, Journal of bacteriology.

[53]  Juergen Wiegel,et al.  Characterization of Clostridium thermocellum JW20 , 1988, Applied and environmental microbiology.

[54]  J. Millet,et al.  Purification and properties of the endoglucanase C of Clostridium thermocellum produced in Escherichia coli. , 1986, Biochimie.

[55]  N. Creuzet,et al.  Properties of β-Glucosidase Purified from Clostridium thermocellum , 1982 .