Structure of the integrin beta3 transmembrane segment in phospholipid bicelles and detergent micelles.

Integrin adhesion receptors transduce bidirectional signals across the plasma membrane, with the integrin transmembrane domains acting as conduits in this process. Here, we report the first high-resolution structure of an integrin transmembrane domain. To assess the influence of the membrane model system, structure determinations of the beta3 integrin transmembrane segment and flanking sequences were carried out in both phospholipid bicelles and detergent micelles. In bicelles, a 30-residue linear alpha-helix, encompassing residues I693-H772, is adopted, of which I693-I721 appear embedded in the hydrophobic bicelle core. This relatively long transmembrane helix implies a pronounced helix tilt within a typical lipid bilayer, which facilitates the snorkeling of K716's charged side chain out of the lipid core while simultaneously immersing hydrophobic L717-I721 in the membrane. A shortening of bicelle lipid hydrocarbon tails does not lead to the transfer of L717-I721 into the aqueous phase, suggesting that the reported embedding represents the preferred beta3 state. The nature of the lipid headgroup affected only the intracellular part of the transmembrane helix, indicating that an asymmetric lipid distribution is not required for studying the beta3 transmembrane segment. In the micelle, residues L717-I721 are also embedded but deviate from linear alpha-helical conformation in contrast to I693-K716, which closely resemble the bicelle structure.

[1]  A. Szabó,et al.  Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity , 1982 .

[2]  S. White,et al.  The preference of tryptophan for membrane interfaces. , 1998, Biochemistry.

[3]  A. Bax,et al.  Evaluation of cross-correlation effects and measurement of one-bond couplings in proteins with short transverse relaxation times. , 2000, Journal of magnetic resonance.

[4]  Renhao Li,et al.  Oligomerization of the integrin αIIbβ3: Roles of the transmembrane and cytoplasmic domains , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[5]  R. Prosser,et al.  Isotropic solutions of phospholipid bicelles: A new membrane mimetic for high-resolution NMR studies of polypeptides , 1997, Journal of biomolecular NMR.

[6]  D. Engelman,et al.  Involvement of transmembrane domain interactions in signal transduction by alpha/beta integrins. , 2004, The Journal of biological chemistry.

[7]  A. Bax,et al.  Structure and dynamics of micelle-associated human immunodeficiency virus gp41 fusion domain. , 2005, Biochemistry.

[8]  David A. Calderwood,et al.  The Phosphotyrosine Binding-like Domain of Talin Activates Integrins* , 2002, The Journal of Biological Chemistry.

[9]  S. Grzesiek,et al.  NMRPipe: A multidimensional spectral processing system based on UNIX pipes , 1995, Journal of biomolecular NMR.

[10]  B. Yaspan,et al.  NMR analysis of structure and dynamics of the cytosolic tails of integrin alpha IIb beta 3 in aqueous solution. , 2001, Biochemistry.

[11]  R. Prosser,et al.  Current applications of bicelles in NMR studies of membrane-associated amphiphiles and proteins. , 2006, Biochemistry.

[12]  Jun Qin,et al.  A Structural Mechanism of Integrin αIIbβ3 “Inside-Out” Activation as Regulated by Its Cytoplasmic Face , 2002, Cell.

[13]  B. Matthews,et al.  Intrahelical hydrogen bonding of serine, threonine and cysteine residues within alpha-helices and its relevance to membrane-bound proteins. , 1984, Journal of molecular biology.

[14]  A. Bax,et al.  Micelle-induced curvature in a water-insoluble HIV-1 Env peptide revealed by NMR dipolar coupling measurement in stretched polyacrylamide gel. , 2002, Journal of the American Chemical Society.

[15]  A. Bax,et al.  Measurement of one-bond 15N-13C′ dipolar couplings in medium sized proteins , 2000, Journal of biomolecular NMR.

[16]  G. von Heijne,et al.  Determination of the Border between the Transmembrane and Cytoplasmic Domains of Human Integrin Subunits* , 1999, The Journal of Biological Chemistry.

[17]  J. Bowie,et al.  Analysis of side-chain rotamers in transmembrane proteins. , 2004, Biophysical journal.

[18]  H. Khorana,et al.  A collision gradient method to determine the immersion depth of nitroxides in lipid bilayers: application to spin-labeled mutants of bacteriorhodopsin. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[19]  J. Takagi,et al.  A Specific Interface between Integrin Transmembrane Helices and Affinity for Ligand , 2004, PLoS biology.

[20]  Ginsberg,et al.  Transmembrane domain helix packing stabilizes integrin aIIb beta 3 in the low affinity state , 2004 .

[21]  C. Sanders,et al.  Reconstitution of membrane proteins into lipid-rich bilayered mixed micelles for NMR studies. , 1995, Biochemistry.

[22]  Ad Bax,et al.  Structure and Dynamics of Micelle-bound Human α-Synuclein* , 2005, Journal of Biological Chemistry.

[23]  A. Bax,et al.  Chi 1 angle information from a simple two-dimensional NMR experiment that identifies trans 3JNC gamma couplings in isotopically enriched proteins. , 1997, Journal of biomolecular NMR.

[24]  G. Lipari Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules , 1982 .

[25]  R. Liddington,et al.  Structural Basis of Integrin Activation by Talin , 2007, Cell.

[26]  A. Wand,et al.  Characterization of the monomeric form of the transmembrane and cytoplasmic domains of the integrin beta 3 subunit by NMR spectroscopy. , 2002, Biochemistry.

[27]  Richard O Hynes,et al.  Integrins Bidirectional, Allosteric Signaling Machines , 2002, Cell.

[28]  R. Riek,et al.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[29]  J. Bowie,et al.  Transmembrane Domain Helix Packing Stabilizes Integrin αIIbβ3 in the Low Affinity State* , 2005, Journal of Biological Chemistry.

[30]  P. Karplus Experimentally observed conformation‐dependent geometry and hidden strain in proteins , 1996, Protein science : a publication of the Protein Society.

[31]  A. Bax,et al.  Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium. , 1997, Science.

[32]  I. Vattulainen,et al.  Atomic-scale structure and electrostatics of anionic palmitoyloleoylphosphatidylglycerol lipid bilayers with Na+ counterions. , 2007, Biophysical journal.

[33]  Y. Ishii,et al.  Alignment of Biopolymers in Strained Gels: A New Way To Create Detectable Dipole−Dipole Couplings in High-Resolution Biomolecular NMR , 2000 .

[34]  S. White,et al.  Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. II. Distribution and packing of terminal methyl groups. , 1992, Biophysical journal.

[35]  M. Shimaoka,et al.  Requirement of alpha and beta subunit transmembrane helix separation for integrin outside-in signaling. , 2007, Blood.

[36]  Ad Bax,et al.  Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy. , 2003, Journal of the American Chemical Society.

[37]  O. Jardetzky,et al.  Predicting 15N chemical shifts in proteins using the preceding residue-specific individual shielding surfaces from φ, ψi−1, and χ1torsion angles , 2004, Journal of biomolecular NMR.

[38]  A. Bax,et al.  χ1 angle information from a simple two-dimensional NMR experiment that identifies trans 3JNCγ couplings in isotopically enriched proteins , 1997 .

[39]  A. Bax,et al.  Empirical correlation between protein backbone conformation and C.alpha. and C.beta. 13C nuclear magnetic resonance chemical shifts , 1991 .

[40]  Ad Bax,et al.  An empirical backbone-backbone hydrogen-bonding potential in proteins and its applications to NMR structure refinement and validation. , 2004, Journal of the American Chemical Society.

[41]  W. DeGrado,et al.  A push-pull mechanism for regulating integrin function. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[42]  Charles D Schwieters,et al.  The Xplor-NIH NMR molecular structure determination package. , 2003, Journal of magnetic resonance.

[43]  M. Ginsberg,et al.  Trans-dominant inhibition of integrin function. , 1996, Molecular biology of the cell.

[44]  G. Clore,et al.  Sources of and solutions to problems in the refinement of protein NMR structures against torsion angle potentials of mean force. , 2000, Journal of magnetic resonance.

[45]  A. Bax,et al.  A simple apparatus for generating stretched polyacrylamide gels, yielding uniform alignment of proteins and detergent micelles* , 2001, Journal of biomolecular NMR.

[46]  A. Bax,et al.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology , 1999, Journal of biomolecular NMR.

[47]  M. Ginsberg,et al.  Integrin regulation. , 2005, Current opinion in cell biology.

[48]  A. Bax,et al.  Structure and dynamics of micelle-associated human immunodeficiency virus gp41 fusion domain. , 2005, Biochemistry.

[49]  Giovanni Lipari,et al.  MODEL-FREE APPROACH TO THE INTERPRETATION OF NUCLEAR MAGNETIC RESONANCE RELAXATION IN MACROMOLECULES. 1. THEORY AND RANGE OF VALIDITY , 1982 .

[50]  J. Qin,et al.  A structural mechanism of integrin alpha(IIb)beta(3) "inside-out" activation as regulated by its cytoplasmic face. , 2002, Cell.

[51]  J. Qin,et al.  Membrane-mediated structural transitions at the cytoplasmic face during integrin activation , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[52]  Donald M. Engelman,et al.  Involvement of Transmembrane Domain Interactions in Signal Transduction by α/β Integrins* , 2004, Journal of Biological Chemistry.

[53]  M. Shimaoka,et al.  Requirement of α and β subunit transmembrane helix separation for integrin outside-in signaling , 2007 .