Molecular Dynamics Studies of the Nucleoprotein of Influenza A Virus: Role of the Protein Flexibility in RNA Binding
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Christophe Chevalier | C. Di Primo | B. Delmas | C. Chevalier | Charles-Adrien Richard | B. Tarus | Bogdan Tarus | Carmelo Di Primo | Bernard Delmas | Charles-Adrien Richard | Anny Slama-Schwok | A. Slama-Schwok
[1] Laxmikant V. Kalé,et al. Scalable molecular dynamics with NAMD , 2005, J. Comput. Chem..
[2] S. Cusack,et al. Structure of influenza virus RNP. I. Influenza virus nucleoprotein melts secondary structure in panhandle RNA and exposes the bases to the solvent. , 1994, The EMBO journal.
[3] T. Darden,et al. Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems , 1993 .
[4] W. L. Jorgensen,et al. Comparison of simple potential functions for simulating liquid water , 1983 .
[5] G. Brownlee,et al. Influenza Virion-Derived Viral Ribonucleoproteins Synthesize both mRNA and cRNA In Vitro , 2006, Journal of Virology.
[6] Tokiko Watanabe,et al. Mutational Analysis of Conserved Amino Acids in the Influenza A Virus Nucleoprotein , 2009, Journal of Virology.
[7] Jianpeng Ma,et al. CHARMM: The biomolecular simulation program , 2009, J. Comput. Chem..
[8] Torsten Schwede,et al. BIOINFORMATICS Bioinformatics Advance Access published November 12, 2005 The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling , 2022 .
[9] Y. Berhane,et al. Development and application of monoclonal antibodies against avian influenza virus nucleoprotein. , 2008, Journal of virological methods.
[10] C. Müller,et al. Human importin alpha and RNA do not compete for binding to influenza A virus nucleoprotein. , 2011, Virology.
[11] Nicole C. Robb,et al. Functional Analysis of the Influenza Virus H5N1 Nucleoprotein Tail Loop Reveals Amino Acids That Are Crucial for Oligomerization and Ribonucleoprotein Activities , 2010, Journal of Virology.
[12] R. Krug,et al. Interaction of the Influenza A Virus Nucleocapsid Protein with the Viral RNA Polymerase Potentiates Unprimed Viral RNA Replication , 2008, Journal of Virology.
[13] Alexander D. MacKerell,et al. Development and current status of the CHARMM force field for nucleic acids , 2000, Biopolymers.
[14] J. Philo. An improved function for fitting sedimentation velocity data for low-molecular-weight solutes. , 1997, Biophysical journal.
[15] G. Ciccotti,et al. Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes , 1977 .
[16] P. Digard,et al. Edinburgh Research Explorer Identification of amino acid residues of influenza virus nucleoprotein essential for RNA binding , 2022 .
[17] P. Shaw,et al. Structure and sequence analysis of influenza A virus nucleoprotein , 2009, Science in China Series C: Life Sciences.
[18] Carmelo Di Primoa. Real time analysis of the RNAI – RNAII – Rop complex by surface plasmon resonance : from a decaying surface to a standard kinetic analysis , 2008 .
[19] E. Abe,et al. Direct observation of a local thermal vibration anomaly in a quasicrystal , 2003, Nature.
[20] J. Richardson,et al. The anatomy and taxonomy of protein structure. , 1981, Advances in protein chemistry.
[21] G. Kochs,et al. A classical bipartite nuclear localization signal on Thogoto and influenza A virus nucleoproteins. , 1998, Virology.
[22] E. Medcalf,et al. Oligomerization of the influenza virus nucleoprotein: identification of positive and negative sequence elements. , 1999, Virology.
[23] G. Brownlee,et al. Model Suggesting that Replication of Influenza Virus Is Regulated by Stabilization of Replicative Intermediates , 2004, Journal of Virology.
[24] K. Fujii,et al. Contributions of Two Nuclear Localization Signals of Influenza A Virus Nucleoprotein to Viral Replication , 2006, Journal of Virology.
[25] P. Brown,et al. Macromolecular size-and-shape distributions by sedimentation velocity analytical ultracentrifugation. , 2006, Biophysical journal.
[26] R. Krug,et al. The mechanism by which influenza A virus nucleoprotein forms oligomers and binds RNA , 2006, Nature.
[27] J. Ortín,et al. Mutational Analysis of Influenza A Virus Nucleoprotein: Identification of Mutations That Affect RNA Replication , 1999, Journal of Virology.
[28] Eric T Baldwin,et al. Inhibition of influenza virus replication via small molecules that induce the formation of higher-order nucleoprotein oligomers , 2011, Proceedings of the National Academy of Sciences.
[29] Pang-Chui Shaw,et al. Structure of the influenza virus A H5N1 nucleoprotein: implications for RNA binding, oligomerization, and vaccine design , 2008, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[30] P. Digard,et al. The influenza virus nucleoprotein: a multifunctional RNA-binding protein pivotal to virus replication. , 2002, The Journal of general virology.
[31] J. Carrascosa,et al. The Structure of a Biologically Active Influenza Virus Ribonucleoprotein Complex , 2009, PLoS pathogens.