Potential and utilization of thermophiles and thermostable enzymes in biorefining

In today's world, there is an increasing trend towards the use of renewable, cheap and readily available biomass in the production of a wide variety of fine and bulk chemicals in different biorefineries. Biorefineries utilize the activities of microbial cells and their enzymes to convert biomass into target products. Many of these processes require enzymes which are operationally stable at high temperature thus allowing e.g. easy mixing, better substrate solubility, high mass transfer rate, and lowered risk of contamination. Thermophiles have often been proposed as sources of industrially relevant thermostable enzymes. Here we discuss existing and potential applications of thermophiles and thermostable enzymes with focus on conversion of carbohydrate containing raw materials. Their importance in biorefineries is explained using examples of lignocellulose and starch conversions to desired products. Strategies that enhance thermostablity of enzymes both in vivo and in vitro are also assessed. Moreover, this review deals with efforts made on developing vectors for expressing recombinant enzymes in thermophilic hosts.

[1]  H. Freeze,et al.  Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile , 1969, Journal of bacteriology.

[2]  N. Saito A thermophilic extracellular -amylase from Bacillus licheniformis. , 1973, Archives of biochemistry and biophysics.

[3]  P. V. Subba Rao,et al.  Purification and characterization of a thermostable glucoamylase from the thermophilic fungus Thermomyces lanuginosus. , 1981, The Biochemical journal.

[4]  E. Sjöström,et al.  Wood Chemistry: Fundamentals and Applications , 1981 .

[5]  J. Zeikus,et al.  Ethanol production by thermophilic bacteria: metabolic control of end product formation in Thermoanaerobium brockii , 1981, Journal of bacteriology.

[6]  J. Zeikus,et al.  Ethanol Production by Thermophilic Bacteria: Physiological Comparison of Solvent Effects on Parent and Alcohol-Tolerant Strains of Clostridium thermohydrosulfuricum , 1984, Applied and environmental microbiology.

[7]  T. D. Brock Thermophiles : general, molecular, and applied microbiology , 1986 .

[8]  B. Saha,et al.  Purification and characterization of a novel thermostable beta-amylase from Clostridium thermosulphurogenes. , 1988, The Biochemical journal.

[9]  A. Böck,et al.  Production of thermostable, recombinant α-galactosidase suitable for raffinose elimination from sugar beet syrup , 1988 .

[10]  J. Kristjánsson Thermophilic organisms as sources of thermostable enzymes , 1989 .

[11]  M. Moo-young,et al.  Enzymatic degradation of cell wall and related plant polysaccharides. , 1989, Critical reviews in biotechnology.

[12]  M. Sinnott,et al.  Catalytic mechanism of enzymic glycosyl transfer , 1990 .

[13]  R. Jaenicke,et al.  Topographical and enzymatic characterization of amylases from the extremely thermophilic eubacterium Thermotoga maritima , 1991, FEBS letters.

[14]  M. Sinnott Catalytic Mechanisms of Enzymic Glycosyl Transfer , 1991 .

[15]  R. Jaenicke,et al.  Protein stability and molecular adaptation to extreme conditions. , 1991, European journal of biochemistry.

[16]  G. Antranikian,et al.  Purification and Properties of a Thermoactive Glucoamylase from Clostridium thermosaccharolyticum , 1991, Applied and environmental microbiology.

[17]  M. Penttilä,et al.  Xylitol Production by Recombinant Saccharomyces Cerevisiae , 1991, Bio/Technology.

[18]  K. Schleifer,et al.  Purification and characterization of a novel thermostable 4-alpha-glucanotransferase of Thermotoga maritima cloned in Escherichia coli. , 1992, European journal of biochemistry.

[19]  L. Ingram,et al.  Ethanol production from cellobiose, amorphous cellulose, and crystalline cellulose by recombinant Klebsiella oxytoca containing chromosomally integrated Zymomonas mobilis genes for ethanol production and plasmids expressing thermostable cellulase genes from Clostridium thermocellum , 1992, Applied and environmental microbiology.

[20]  M. Rossi,et al.  Expression of the thermostable beta-galactosidase gene from the archaebacterium Sulfolobus solfataricus in Saccharomyces cerevisiae and characterization of a new inducible promoter for heterologous expression , 1992, Journal of bacteriology.

[21]  M. Mather,et al.  Development of plasmid cloning vectors for Thermus thermophilus HB8: expression of a heterologous, plasmid-borne kanamycin nucleotidyltransferase gene , 1992, Applied and environmental microbiology.

[22]  A. Margolin,et al.  Enzymes in the synthesis of chiral drugs. , 1993, Enzyme and microbial technology.

[23]  Jürgen Puls,et al.  Chemistry and biochemistry of hemicelluloses: Relationship between hemicellulose structure and enzymes required for hydrolysis , 1997 .

[24]  Stephen H. Brown,et al.  Characterization of Amylolytic Enzymes, Having Both α-1,4 and α-1,6 Hydrolytic Activity, from the Thermophilic Archaea Pyrococcus furiosus and Thermococcus litoralis , 1993 .

[25]  G. Hazlewood,et al.  Hemicellulose and hemicellulases , 1993 .

[26]  A. Stams,et al.  Purification and characterization of an extremely thermostable beta-glucosidase from the hyperthermophilic archaeon Pyrococcus furiosus. , 1993, European journal of biochemistry.

[27]  Liisa Viikari,et al.  Xylanases in bleaching: From an idea to the industry , 1994 .

[28]  M. Fernandez,et al.  Citrus pectin and cholesterol interact to regulate hepatic cholesterol homeostasis and lipoprotein metabolism: a dose-response study in guinea pigs. , 1994, The American journal of clinical nutrition.

[29]  S. Ito,et al.  Purification and characterization of an alkaline amylopullulanase with both α-1,4 and α-1,6 hydrolytic activity from alkalophilic Bacillus sp. KSM-1378 , 1995 .

[30]  M. Rossi,et al.  Molecular biology of extremophiles , 1995, World journal of microbiology & biotechnology.

[31]  L. Dijkhuizen,et al.  Federal Republic of Germany , 1985, International Journal of Comparative Labour Law and Industrial Relations.

[32]  N. Gilkes,et al.  Cellulose hydrolysis by bacteria and fungi. , 1995, Advances in microbial physiology.

[33]  W. Liebl,et al.  Purification of Thermotoga maritima enzymes for the degradation of cellulosic materials , 1995, Applied and environmental microbiology.

[34]  A. Pandey Glucoamylase Research: An Overview , 1995 .

[35]  G. Antranikian,et al.  Isolation and characterization of a heat-stable pullulanase from the hyperthermophilic archaeon Pyrococcus woesei after cloning and expression of its gene in Escherichia coli , 1995, Applied and environmental microbiology.

[36]  T. Schäfer,et al.  Three extremely thermostable proteins from Sulfolobus and a reappraisal of the 'traffic rules'. , 1996, Biological chemistry.

[37]  R. Daniel,et al.  The upper limits of enzyme thermal stability , 1996 .

[38]  R. Daniel,et al.  The denaturation and degradation of stable enzymes at high temperatures. , 1996, The Biochemical journal.

[39]  Herbert Märkl,et al.  Fermentation of extremophilic microorganisms , 1996 .

[40]  N. Parris,et al.  Chitosan/Pectin Laminated Films , 1996 .

[41]  V. Zverlov,et al.  Thermotoga neapolitana bgIB gene, upstream of lamA, encodes a highly thermostable β-glucosidase that is a laminaribiase , 1997 .

[42]  S. Fujiwara,et al.  Cloning and expression of the 4-α-glucanotransferase gene from the hyperthermophilic archaeon Pyrococcus sp. KOD1, and characterization of the enzyme , 1997 .

[43]  J. Buchert,et al.  Hemicellulases in the bleaching of chemical pulps. , 1997, Advances in biochemical engineering/biotechnology.

[44]  G. Antranikian,et al.  Purification and Properties of a Thermostable Pullulanase from a Newly Isolated Thermophilic Anaerobic Bacterium, Fervidobacterium pennavorans Ven5 , 1997, Applied and environmental microbiology.

[45]  R. Muzzarelli,et al.  Human enzymatic activities related to the therapeutic administration of chitin derivatives , 1997, Cellular and Molecular Life Sciences CMLS.

[46]  L. Pasamontes,et al.  Gene cloning, purification, and characterization of a heat-stable phytase from the fungus Aspergillus fumigatus , 1997, Applied and environmental microbiology.

[47]  M. Adams,et al.  Release of lignin from kraft pulp by a hyperthermophilic xylanase from Thermatoga maritima , 1997 .

[48]  Ashutosh Kumar Singh,et al.  Microorganisms and enzymes involved in the degradation of plant fiber cell walls. , 1997, Advances in biochemical engineering/biotechnology.

[49]  Rajagopal N. Aravalli,et al.  Shuttle vectors for hyperthermophilic archaea , 1997, Extremophiles.

[50]  C. Vieille,et al.  Cloning, sequencing, and expression of the gene encoding extracellular alpha-amylase from Pyrococcus furiosus and biochemical characterization of the recombinant enzyme , 1997, Applied and environmental microbiology.

[51]  C. Mitchinson,et al.  Enzymes involved in the processing of starch to sugars , 1997 .

[52]  J. Szejtli Utilization of cyclodextrins in industrial products andprocesses , 1997 .

[53]  R. Kelly,et al.  Purification and characterization of extremely thermostable beta-mannanase, beta-mannosidase, and alpha-galactosidase from the hyperthermophilic eubacterium Thermotoga neapolitana 5068 , 1997, Applied and environmental microbiology.

[54]  Tuula T. Teeri,et al.  Crystalline cellulose degradation : new insight into the function of cellobiohydrolases , 1997 .

[55]  B. Oh,et al.  Characterization of a Thermostable Cyclodextrin Glucanotransferase Isolated from Bacillus stearothermophilus ET1 , 1998 .

[56]  G. Barbier,et al.  New thermostable enzymes for crop fractionation , 1997 .

[57]  O. Gaouar,et al.  Enzymatic hydrolysis of cassava starch into maltose syrup in a continuous membrane reactor , 1997 .

[58]  C. Vieille,et al.  Cloning, Sequencing, and Expression of the Gene Encoding Extracellular a-Amylase from Pyrococcus furiosus and Biochemical Characterization of the Recombinant Enzyme , 1997 .

[59]  J. Szejtli Introduction and General Overview of Cyclodextrin Chemistry. , 1998, Chemical reviews.

[60]  R. Ladenstein,et al.  Proteins from hyperthermophiles: stability and enzymatic catalysis close to the boiling point of water. , 1998, Advances in biochemical engineering/biotechnology.

[61]  J. Lebbink,et al.  Insights into the molecular basis of thermal stability from the analysis of ion-pair networks in the glutamate dehydrogenase family. , 1998, European journal of biochemistry.

[62]  W. Liebl,et al.  Thermotoga maritima maltosyltransferase, a novel type of maltodextrin glycosyltransferase acting on starch and malto-oligosaccharides. , 1998, European journal of biochemistry.

[63]  W. Fessner Enzyme mediated C-C bond formation. , 1998, Current opinion in chemical biology.

[64]  C. Hedley,et al.  Starch: as simple as A, B, C? , 1998 .

[65]  J. Kellermann,et al.  Purification and properties of an amylopullulanase, a glucoamylase, and an alpha-glucosidase in the amylolytic enzyme system of Thermoanaerobacterium thermosaccharolyticum. , 1998, Bioscience, biotechnology, and biochemistry.

[66]  Joseph H. Hotchkiss,et al.  Naringinase Immobilization in Packaging Films for Reducing Naringin Concentration in Grapefruit Juice , 1998 .

[67]  I. Fotheringham,et al.  Novel biosynthetic approaches to the production of unnatural amino acids using transaminases. , 1998, Trends in biotechnology.

[68]  D. Otzen,et al.  Enzymatic Characterisation of Novamyl®, a Thermostable α‐Amylase , 1998 .

[69]  María J. Llama,et al.  Industrial applications of pectic enzymes: a review , 1998 .

[70]  D. Yernool,et al.  Purification, characterization, and molecular analysis of thermostable cellulases CelA and CelB from Thermotoga neapolitana. , 1998, Applied and environmental microbiology.

[71]  What ultrastable globular proteins teach us about protein stabilization. , 1998, Biochemistry. Biokhimiia.

[72]  I. Banat,et al.  Review: Ethanol production at elevated temperatures and alcohol concentrations: Part II – Use of Kluyveromyces marxianus IMB3 , 1998 .

[73]  P. Simpson,et al.  Pseudomonas cellulose-binding domains mediate their effects by increasing enzyme substrate proximity. , 1998, The Biochemical journal.

[74]  D. Hough,et al.  Structure, function and stability of enzymes from the Archaea. , 1998, Trends in microbiology.

[75]  P. Bergquist,et al.  Expression and secretion of a xylanase from the extreme thermophile, Thermotoga strain FjSS3B.1, in Kluyveromyces lactis , 1998, Extremophiles.

[76]  E. Bayer,et al.  Cellulose, cellulases and cellulosomes. , 1998, Current opinion in structural biology.

[77]  W. Liebl,et al.  Analysis of the gene for β-fructosidase (invertase, inulinase) of the hyperthermophilic bacterium Thermotoga maritima, and characterisation of the enzyme expressed in Escherichia coli , 1998, Applied Microbiology and Biotechnology.

[78]  G. Antranikian,et al.  Extremophiles as a source of novel enzymes for industrial application , 1999, Applied Microbiology and Biotechnology.

[79]  Y. Terada,et al.  Thermus aquaticus ATCC 33923 Amylomaltase Gene Cloning and Expression and Enzyme Characterization: Production of Cycloamylose , 1999, Applied and Environmental Microbiology.

[80]  C. Kumar,et al.  Microbial alkaline proteases: from a bioindustrial viewpoint. , 1999, Biotechnology advances.

[81]  K. Uekama,et al.  Cyclodextrins in peptide and protein delivery. , 1999, Advanced drug delivery reviews.

[82]  A Martinez,et al.  Enteric Bacterial Catalysts for Fuel Ethanol Production , 1999, Biotechnology progress.

[83]  M. Himmel,et al.  Enzymes, Energy, and the Environment: A Strategic Perspective on the U.S. Department of Energy's Research and Development Activities for Bioethanol , 1999, Biotechnology progress.

[84]  Douglas C. Cameron,et al.  Metabolic Engineering of a 1,2-Propanediol Pathway in Escherichia coli , 1999, Applied and Environmental Microbiology.

[85]  Himmel,et al.  Cellulase for commodity products from cellulosic biomass , 1999, Current opinion in biotechnology.

[86]  Danny E. Akin,et al.  Production of highly efficient enzymes for flax retting by Rhizomucor pusillus , 1999 .

[87]  M. Pizzigallo,et al.  Fractionation of sugar beet pulp into pectin, cellulose, and arabinose by arabinases combined with ultrafiltration. , 1999, Biotechnology and bioengineering.

[88]  M. Ramakrishna,et al.  Optimisation of downstream processing parameters for the recovery of pectinase from the fermented bran of Aspergillus carbonarius , 1999 .

[89]  S. Ogawa,et al.  Cycloamylose as an efficient artificial chaperone for protein refolding , 2000, FEBS letters.

[90]  Barbagallo,et al.  A simple method for purifying glycosidases: alpha-l-rhamnopyranosidase from Aspergillus niger to increase the aroma of Moscato wine. , 2000, Enzyme and microbial technology.

[91]  D. Haltrich,et al.  Hydrolysis of isolated coffee mannan and coffee extract by mannanases of Sclerotium rolfsii. , 2000, Journal of biotechnology.

[92]  M. Schülein Protein engineering of cellulases. , 2000, Biochimica et biophysica acta.

[93]  J. Doran,et al.  Fermentations of pectin-rich biomass with recombinant bacteria to produce fuel ethanol , 2000 .

[94]  M. Bhat,et al.  Cellulases and related enzymes in biotechnology. , 2000, Biotechnology advances.

[95]  H. Gilbert,et al.  A comparison of enzyme-aided bleaching of softwood paper pulp using combinations of xylanase, mannanase and α-galactosidase , 2000, Applied Microbiology and Biotechnology.

[96]  Steiner,et al.  Optimisation of culture medium and conditions for alpha-l-Arabinofuranosidase production by the extreme thermophilic eubacterium Rhodothermus marinus. , 2000, Enzyme and microbial technology.

[97]  R. Maheshwari,et al.  Thermophilic Fungi: Their Physiology and Enzymes , 2000, Microbiology and Molecular Biology Reviews.

[98]  V. Zverlov,et al.  The thermostable α‐l‐rhamnosidase RamA of Clostridium stercorarium: biochemical characterization and primary structure of a bacterial α‐l‐rhamnoside hydrolase, a new type of inverting glycoside hydrolase , 2000, Molecular microbiology.

[99]  G. Antranikian,et al.  A New Thermoactive Pullulanase from Desulfurococcus mucosus: Cloning, Sequencing, Purification, and Characterization of the Recombinant Enzyme after Expression in Bacillus subtilis , 2000, Journal of bacteriology.

[100]  C. R. Soccol,et al.  Advances in microbial amylases. , 2000, Biotechnology and applied biochemistry.

[101]  J. Wiegel,et al.  Advances in Development of a Genetic System forThermoanaerobacterium spp.: Expression of Genes Encoding Hydrolytic Enzymes, Development of a Second Shuttle Vector, and Integration of Genes into the Chromosome , 2000, Applied and Environmental Microbiology.

[102]  J. Doran,et al.  Fermentations of pectin-rich biomass with recombinant bacteria to produce fuel ethanol. , 2000, Applied biochemistry and biotechnology.

[103]  K. K. Thomsen,et al.  A highly thermostable endo-(1,4)-β-mannanase from the marine bacterium Rhodothermus marinus , 2000, Applied Microbiology and Biotechnology.

[104]  A. Svendsen,et al.  Lipase protein engineering. , 2000, Biochimica et biophysica acta.

[105]  M. Galbe,et al.  The influence of lactic acid formation on the simultaneous saccharification and fermentation (SSF) of softwood to ethanol , 2000 .

[106]  D. Hough,et al.  Thermostability and thermoactivity of citrate synthases from the thermophilic and hyperthermophilic archaea, Thermoplasma acidophilum and Pyrococcus furiosus. , 2000, Journal of molecular biology.

[107]  S. Fujiwara,et al.  Acceptor specificity of 4-alpha-glucanotransferase from Pyrococcus kodakaraensis KOD1, and synthesis of cycloamylose. , 2000, Journal of bioscience and bioengineering.

[108]  B. Saha Alpha-L-arabinofuranosidases: biochemistry, molecular biology and application in biotechnology. , 2000, Biotechnology advances.

[109]  S. Debon,et al.  Annealing of starch - a review. , 2000, International journal of biological macromolecules.

[110]  W. Liebl,et al.  Pullulanase from the hyperthermophilic bacterium Thermotoga maritima: purification by beta-cyclodextrin affinity chromatography. , 2000, Journal of chromatography. B, Biomedical sciences and applications.

[111]  R. Malhotra,et al.  Production and partial characterization of thermostable and calcium‐independent α‐amylase of an extreme thermophile Bacillus thermooleovorans NP54 , 2000, Letters in applied microbiology.

[112]  B. Haye,et al.  Cloning and expression of an alpha-amylase encoding gene from the hyperthermophilic archaebacterium Thermococcus hydrothermalis and biochemical characterisation of the recombinant enzyme. , 2000, FEMS microbiology letters.

[113]  R. Boom,et al.  Thermozymes and their applications , 2001, Applied biochemistry and biotechnology.

[114]  Paul Christakopoulos,et al.  Comparative growth studies of the extreme thermophile Sulfolobus acidocaldarius in submerged and solidified substrate cultures , 2001 .

[115]  A Zaks,et al.  Industrial biocatalysis. , 2001, Current opinion in chemical biology.

[116]  J. Short,et al.  Galactomannanases Man2 and Man5 from Thermotoga species: growth physiology on galactomannans, gene sequence analysis, and biochemical properties of recombinant enzymes. , 2001, Biotechnology and bioengineering.

[117]  W. Aehle,et al.  Enzymes for Industrial Applications , 2001 .

[118]  J. Stewart Dehydrogenases and transaminases in asymmetric synthesis. , 2001, Current opinion in chemical biology.

[119]  D. Demirjian,et al.  Enzymes from extremophiles. , 2001, Current opinion in chemical biology.

[120]  C. Vieille,et al.  Hyperthermophilic Enzymes: Sources, Uses, and Molecular Mechanisms for Thermostability , 2001, Microbiology and Molecular Biology Reviews.

[121]  R. Kelly,et al.  alpha-Glucosidase from Pyrococcus furiosus. , 2001, Methods in enzymology.

[122]  Hendrik F. Hameka,et al.  Chemistry: Fundamentals and Applications , 2001 .

[123]  Y. Terada,et al.  Comparative Study of the Cyclization Reactions of Three Bacterial Cyclomaltodextrin Glucanotransferases , 2001, Applied and Environmental Microbiology.

[124]  M. Shinohara,et al.  A novel thermostable branching enzyme from an extremely thermophilic bacterial species, Rhodothermus obamensis , 2001, Applied Microbiology and Biotechnology.

[125]  D R Kashyap,et al.  Applications of pectinases in the commercial sector: a review. , 2001, Bioresource technology.

[126]  J. Nielsen,et al.  Fuel ethanol production from lignocellulose: a challenge for metabolic engineering and process integration , 2001, Applied Microbiology and Biotechnology.

[127]  V. Zverlov,et al.  The binding pattern of two carbohydrate-binding modules of laminarinase Lam16A from Thermotoga neapolitana: differences in beta-glucan binding within family CBM4. , 2001, Microbiology.

[128]  S. Scheideler,et al.  Effect of supplementation of two different sources of phytase on egg production parameters in laying hens and nutrient digestiblity. , 2001, Poultry science.

[129]  K. Shanmugam,et al.  Engineering a Homo-Ethanol Pathway inEscherichia coli: Increased Glycolytic Flux and Levels of Expression of Glycolytic Genes during Xylose Fermentation , 2001, Journal of bacteriology.

[130]  A. Karshikoff,et al.  Ion pairs and the thermotolerance of proteins from hyperthermophiles: a "traffic rule" for hot roads. , 2001, Trends in biochemical sciences.

[131]  E. Karlsson,et al.  Deletion of a cytotoxic, N-terminal putative signal peptide results in a significant increase in production yields in Escherichia coli and improved specific activity of Cel12A from Rhodothermus marinus , 2001, Applied Microbiology and Biotechnology.

[132]  Lubbert Dijkhuizen,et al.  Properties and applications of starch-converting enzymes of the α-amylase family , 2002 .

[133]  G. Ellenrieder,et al.  Thermal Inactivation and Product Inhibition of Aspergillus terreus CECT 2663 α-L-Rhamnosidase and Their Role on Hydrolysis of Naringin Solutions , 2002, Bioscience, biotechnology, and biochemistry.

[134]  J. B. van Beilen,et al.  Enzyme technology: an overview. , 2002, Current opinion in biotechnology.

[135]  Kim Lambertsen Larsen,et al.  Large Cyclodextrins , 2002 .

[136]  J. W. Frost,et al.  Benzene‐Free Synthesis of Adipic Acid , 2002, Biotechnology progress.

[137]  M. A. Eiteman,et al.  Effects of Growth Mode and Pyruvate Carboxylase on Succinic Acid Production by Metabolically Engineered Strains of Escherichia coli , 2002, Applied and Environmental Microbiology.

[138]  T. Takaha,et al.  Physicochemical Properties of Large-Ring Cyclodextrins (CD18∼CD21 , 2002 .

[139]  P. Taylor,et al.  Crystal structure of a thermostable lipase from Bacillus stearothermophilus P1. , 2002, Journal of molecular biology.

[140]  C. T. Andrade,et al.  Investigation of the gelatinization and extrusion processes of corn starch , 2002 .

[141]  G. Antranikian,et al.  Starch-hydrolyzing enzymes from thermophilic archaea and bacteria. , 2002, Current opinion in chemical biology.

[142]  P. Hagander,et al.  Production of heterologous thermostable glycoside hydrolases and the presence of host-cell proteases in substrate limited fed-batch cultures of Escherichia coli BL21(DE3) , 2002, Applied Microbiology and Biotechnology.

[143]  Structural basis of the synthesis of large cycloamyloses by amylomaltase , 2002 .

[144]  Jung-Wan Kim,et al.  Cooperative action of alpha-glucanotransferase and maltogenic amylase for an improved process of isomaltooligosaccharide (IMO) production. , 2002, Journal of agricultural and food chemistry.

[145]  M. Mihovilovic,et al.  Monooxygenase‐Mediated Baeyer−Villiger Oxidations , 2002 .

[146]  U. Bornscheuer Microbial carboxyl esterases: classification, properties and application in biocatalysis. , 2002, FEMS microbiology reviews.

[147]  Characterization of an Archaeal Cyclodextrin Glucanotransferase with a Novel C-Terminal Domain , 2002, Journal of bacteriology.

[148]  M. de Rosa,et al.  The production of biocatalysts and biomolecules from extremophiles. , 2002, Trends in biotechnology.

[149]  M. Galbe,et al.  A review of the production of ethanol from softwood , 2002, Applied Microbiology and Biotechnology.

[150]  S. Crennell,et al.  The structure of Rhodothermus marinus Cel12A, a highly thermostable family 12 endoglucanase, at 1.8 A resolution. , 2002, Journal of molecular biology.

[151]  Q. Beg,et al.  Bacterial alkaline proteases: molecular approaches and industrial applications , 2002, Applied Microbiology and Biotechnology.

[152]  H. Ueda Physicochemical Properties and Complex Formation Abilities of Large-Ring Cyclodextrins , 2002 .

[153]  G. Seymour,et al.  Pectate lyases, cell wall degradation and fruit softening. , 2002, Journal of experimental botany.

[154]  I. S. Pretorius,et al.  Microbial Cellulose Utilization: Fundamentals and Biotechnology , 2002, Microbiology and Molecular Biology Reviews.

[155]  T. Sakai,et al.  Purification and Characterization of Thermostable Endo-1,5-α-l-Arabinase from a Strain of Bacillus thermodenitrificans , 2002, Applied and Environmental Microbiology.

[156]  S. Fujiwara Extremophiles: developments of their special functions and potential resources. , 2002, Journal of bioscience and bioengineering.

[157]  Arno P. Biwer,et al.  Enzymatic production of cyclodextrins , 2002, Applied Microbiology and Biotechnology.

[158]  P. Forterre,et al.  Construction of a Shuttle Vector for, and Spheroplast Transformation of, the Hyperthermophilic Archaeon Pyrococcus abyssi , 2002, Applied and Environmental Microbiology.

[159]  H. Nevalainen,et al.  Expression of xylanase enzymes from thermophilic microorganisms in fungal hosts , 2002, Extremophiles.

[160]  H. Santos,et al.  Compatible solutes of organisms that live in hot saline environments. , 2002, Environmental microbiology.

[161]  P. Adlercreutz,et al.  Enzymatic Synthesis of Hexyl Glycosides from Lactose At Low Water Activity and High Temperature Using Hyperthermostable β-glycosidases , 2002 .

[162]  Marc Claeyssens,et al.  Kinetic parameters and mode of action of the cellobiohydrolases produced by Talaromyces emersonii. , 2002, Biochimica et biophysica acta.

[163]  T. Poulos,et al.  New understandings of thermostable and peizostable enzymes. , 2003, Current opinion in biotechnology.

[164]  Jung-Woo Kim,et al.  Directed Evolution of Thermus Maltogenic Amylase toward Enhanced Thermal Resistance , 2003, Applied and Environmental Microbiology.

[165]  K. Shanmugam,et al.  Production of Optically Pure d-Lactic Acid in Mineral Salts Medium by Metabolically Engineered Escherichia coli W3110 , 2003, Applied and Environmental Microbiology.

[166]  J. Hugenholtz,et al.  Expression of Sulfolobus solfataricus α-glucosidase in Lactococcus lactis , 2004, Applied Microbiology and Biotechnology.

[167]  W. Steiner,et al.  Highly thermostable amylase and pullulanase of the extreme thermophilic eubacterium Rhodothermus marinus: production and partial characterization. , 2003, Bioresource technology.

[168]  E. Nordberg Karlsson,et al.  Probing the stability of the modular family 10 xylanase from Rhodothermus marinus , 2003, Extremophiles.

[169]  K. Shanmugam,et al.  Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redox-neutral and oxidized products: Homoacetate production , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[170]  F. Kittur,et al.  Fusion of family 2b carbohydrate‐binding module increases the catalytic activity of a xylanase from Thermotoga maritima to soluble xylan , 2003, FEBS letters.

[171]  J. V. van Wyk,et al.  Biodegradation of wastepaper by cellulase from Trichoderma viride. , 2003, Bioresource technology.

[172]  B. Kamm,et al.  Principles of biorefineries , 2004, Applied Microbiology and Biotechnology.

[173]  Robert Huber,et al.  Hyperthermostabilization of Bacillus licheniformis α-amylase and modulation of its stability over a 50°C temperature range , 2003 .

[174]  Nicholas J Turner,et al.  Directed evolution of enzymes for applied biocatalysis. , 2003, Trends in biotechnology.

[175]  L. Dijkhuizen,et al.  Properties of the Glucan Branching Enzyme of the Hyperthermophilic Bacterium Aquifex aeolicus , 2003 .

[176]  A. Vindigni,et al.  A thermostable alpha-arabinofuranosidase from xylanolytic Bacillus pumilus: purification and characterisation. , 2003, Journal of biotechnology.

[177]  A. Burhan,et al.  Enzymatic properties of a novel thermostable, thermophilic, alkaline and chelator resistant amylase from an alkaliphilic Bacillus sp. isolate ANT-6 , 2003 .

[178]  Charles E Wyman,et al.  Potential Synergies and Challenges in Refining Cellulosic Biomass to Fuels, Chemicals, and Power , 2003, Biotechnology progress.

[179]  F. Cava,et al.  Development of a gene expression vector for Thermus thermophilus based on the promoter of the respiratory nitrate reductase. , 2003, Plasmid.

[180]  M. Rossi,et al.  Development of a genetic system for hyperthermophilic Archaea: expression of a moderate thermophilic bacterial alcohol dehydrogenase gene in Sulfolobus solfataricus. , 2003, FEMS microbiology letters.

[181]  B. Mattiasson,et al.  Two new thermostable α-l-rhamnosidases from a novel thermophilic bacterium , 2004 .

[182]  H. Kim,et al.  Thermostable d-hydantoinase from thermophilic Bacillus stearothermophilus SD-1: characteristics of purified enzyme , 1995, Applied Microbiology and Biotechnology.

[183]  W. Kroutil,et al.  Recent advances in the biocatalytic reduction of ketones and oxidation of sec-alcohols. , 2004, Current opinion in chemical biology.

[184]  Guneet Kaur,et al.  Production, characterization and application of a thermostable polygalacturonase of a thermophilic mould Sporotrichum thermophile Apinis. , 2004, Bioresource technology.

[185]  T. Satyanarayana,et al.  Development of an ideal starch saccharification process using amylolytic enzymes from thermophiles. , 2004, Biochemical Society transactions.

[186]  W. Liebl,et al.  Cloning, Sequencing, and Characterization of a Heat- and Alkali-Stable Type I Pullulanase from Anaerobranca gottschalkii , 2004, Applied and Environmental Microbiology.

[187]  J. Buchert,et al.  Enzymatic accessibility of xylans in lignocellulosic materials , 1994, Applied Microbiology and Biotechnology.

[188]  L. Dijkhuizen,et al.  Exploring and exploiting starch-modifying amylomaltases from thermophiles. , 2004, Biochemical Society transactions.

[189]  L. Lynd,et al.  Cloning of l-lactate dehydrogenase and elimination of lactic acid production via gene knockout in Thermoanaerobacterium saccharolyticum JW/SL-YS485 , 2004, Applied Microbiology and Biotechnology.

[190]  B. Ahring,et al.  Potential for using thermophilic anaerobic bacteria for bioethanol production from hemicellulose. , 2004, Biochemical Society transactions.

[191]  Li-Fen Huang,et al.  Expression of a bi-functional and thermostable amylopullulanase in transgenic rice seeds leads to autohydrolysis and altered composition of starch , 2005, Molecular Breeding.

[192]  Mark E. Davis,et al.  Cyclodextrin-based pharmaceutics: past, present and future , 2004, Nature Reviews Drug Discovery.

[193]  E. Karlsson,et al.  Prebleaching of kraft pulp with full-length and truncated forms of a thermostable modular xylanase from Rhodothermus marinus , 2002, Biotechnology Letters.

[194]  T. Wood,et al.  Enzymology of cellulose degradation , 1990, Biodegradation.

[195]  R. Sterner,et al.  Characterisation of a thermoalkali-stable cyclodextrin glycosyltransferase from the anaerobic thermoalkaliphilic bacterium Anaerobranca gottschalkii , 2004, Archives of Microbiology.

[196]  M. Drtil,et al.  Anaerobic biodegradation of sugar beet pulp , 2004, Biodegradation.

[197]  S. Yoo,et al.  Properties of a Novel Thermostable Glucoamylase from the Hyperthermophilic Archaeon Sulfolobus solfataricus in Relation to Starch Processing , 2004, Applied and Environmental Microbiology.

[198]  E. Karlsson,et al.  A carbohydrate binding module as a diversity-carrying scaffold. , 2004, Protein engineering, design & selection : PEDS.

[199]  Y. Shoham,et al.  Characterization and delignification activity of a thermostable α-l-arabinofuranosidase from Bacillus stearothermophilus , 1993, Applied Microbiology and Biotechnology.

[200]  F. Duchiron,et al.  A new pullulanase from a hyperthermophilic archaeon for starch hydrolysis , 2004, Biotechnology Letters.

[201]  Johnathan E. Holladay,et al.  Top Value Added Chemicals From Biomass. Volume 1 - Results of Screening for Potential Candidates From Sugars and Synthesis Gas , 2004 .

[202]  A. Koutinas,et al.  Restructuring upstream bioprocessing: technological and economical aspects for production of a generic microbial feedstock from wheat , 2004, Biotechnology and bioengineering.

[203]  D. Bolam,et al.  Carbohydrate-binding modules: fine-tuning polysaccharide recognition. , 2004, The Biochemical journal.

[204]  Jung-Wan Kim,et al.  Improvement of cyclodextrin glucanotransferase as an antistaling enzyme by error-prone PCR. , 2004, Protein engineering, design & selection : PEDS.

[205]  Donald A. Comfort,et al.  Strategic biocatalysis with hyperthermophilic enzymes , 2004 .

[206]  N. Nishio,et al.  Ethanol production from H2 and CO2 by a newly isolated thermophilic bacterium, Moorella sp. HUC22-1 , 2004, Biotechnology Letters.

[207]  W. Staudenbauer,et al.  Synthesis and secretion of a heat-stable carboxymethylcellulase from Clostridium thermocellum in Bacillus subtilis and Bacillus stearothermophilus , 1987, Molecular and General Genetics MGG.

[208]  Himanish Das,et al.  Useful Byproducts from Cellulosic Wastes of Agriculture and Food Industry—A Critical Appraisal , 2004, Critical reviews in food science and nutrition.

[209]  P. Debeire,et al.  Purification and properties of the catalytic domain of the thermostable pullulanase type II from Thermococcus hydrothermalis , 2001, Biotechnology Letters.

[210]  K. Eriksson,et al.  Biotechnology in the pulp and paper industry , 1990, Wood Science and Technology.

[211]  G. Eggertsson,et al.  Establishment of a gene transfer system for Rhodothermus marinus , 2005, Applied Microbiology and Biotechnology.

[212]  W. Steiner,et al.  The Biocatalytic Potential of Extremophiles and Extremozymes , 2004 .

[213]  G. Tiraby,et al.  Development of a transformation system for the thermophilic fungus Talaromyces sp. CL240 based on the use of phleomycin resistance as a dominant selectable marker , 1992, Molecular and General Genetics MGG.

[214]  B. Ahring,et al.  Inhibition of ethanol-producing yeast and bacteria by degradation products produced during pre-treatment of biomass , 2004, Applied Microbiology and Biotechnology.

[215]  G. Velikodvorskaya,et al.  Prospects for the Practical Application of Substrate-Binding Modules of Glycosyl Hydrolases , 2004, Applied Biochemistry and Microbiology.

[216]  G. Antranikian,et al.  Purification and properties of a hyperthermoactive α-amylase from the archaeobacterium Pyrococcus woesei , 1991, Archives of Microbiology.

[217]  Lubbert Dijkhuizen,et al.  Improved thermostability of bacillus circulans cyclodextrin glycosyltransferase by the introduction of a salt bridge , 2003, Proteins.

[218]  W. Mabee,et al.  Assessing the emerging biorefinery sector in Canada , 2005, Applied biochemistry and biotechnology.

[219]  William O.S. Doherty,et al.  The Sugarcane Biorefinery: Energy Crops and Processes for the Production of Liquid Fuels and Renewable Commodity Chemicals , 2005 .

[220]  K. Réczey,et al.  Fractionation and utilisation of corn fibre carbohydrates , 2005 .

[221]  Mark Holtzapple,et al.  Comparative sugar recovery data from laboratory scale application of leading pretreatment technologies to corn stover. , 2005, Bioresource technology.

[222]  H. Minagawa,et al.  Use of Random and Saturation Mutageneses To Improve the Properties of Thermus aquaticus Amylomaltase for Efficient Production of Cycloamyloses , 2005, Applied and Environmental Microbiology.

[223]  Reena Gupta,et al.  Microbial pectinolytic enzymes: A review , 2005 .

[224]  P. L. Rogers,et al.  Application of Biotechnology to Industrial Sustainability , 2005 .

[225]  L. Lynd,et al.  Consolidated bioprocessing of cellulosic biomass: an update. , 2005, Current opinion in biotechnology.

[226]  T. Satyanarayana,et al.  Extremophilic microbes: Diversity and perspectives , 2005 .

[227]  E. K. Pye Biorefining; a major opportunity for the sugar cane industry. , 2005 .

[228]  Dan S. Tawfik,et al.  Directed evolution of proteins for heterologous expression and stability. , 2005, Current opinion in structural biology.

[229]  Alexander V. Gusakov,et al.  Purification, cloning and characterisation of two forms of thermostable and highly active cellobiohydrolase I (Cel7A) produced by the industrial strain of , 2005 .

[230]  A process of producing a fermentation product , 2005 .

[231]  Mark Holtzapple,et al.  Coordinated development of leading biomass pretreatment technologies. , 2005, Bioresource technology.

[232]  Sven Pedersen,et al.  Efficiencies of designed enzyme combinations in releasing arabinose and xylose from wheat arabinoxylan in an industrial ethanol fermentation residue , 2005 .

[233]  Thijs J. G. Ettema,et al.  Amylomaltase of Pyrobaculum aerophilum IM2 Produces Thermoreversible Starch Gels , 2005, Applied and Environmental Microbiology.

[234]  Mondher Th. Numan,et al.  α-l-Arabinofuranosidases: the potential applications in biotechnology , 2006, Journal of Industrial Microbiology and Biotechnology.

[235]  G. Wu,et al.  Comparison of Natuphos and Phyzyme as phytase sources for commercial layers fed corn-soy diet. , 2006, Poultry science.

[236]  Sung-jae Yang,et al.  Enhancing thermostability of maltogenic amylase from Bacillus thermoalkalophilus ET2 by DNA shuffling , 2006, The FEBS journal.

[237]  M. Chinn,et al.  Screening of Thermophilic Anaerobic Bacteria for Solid Substrate Cultivation on Lignocellulosic Substrates , 2006, Biotechnology progress.

[238]  E. Karlsson,et al.  Production of a lipolytic enzyme originating from Bacillus halodurans LBB2 in the methylotrophic yeast Pichia pastoris , 2006, Applied Microbiology and Biotechnology.

[239]  A. Pérez-Vendrell,et al.  The use of enzymes to improve cereal diets for animal feeding , 2006 .

[240]  T. Foglia,et al.  Conversion of agricultural feedstock and coproducts into poly(hydroxyalkanoates) , 2006, Applied Microbiology and Biotechnology.

[241]  Harish Kumar,et al.  Microbial production, immobilization and applications of β-D-galactosidase , 2006 .

[242]  K. Inouye,et al.  Comparison of Starch Hydrolysis Activity and Thermal Stability of Two Bacillus licheniformis α-Amylases and Insights into Engineering α-Amylase Variants Active under Acidic Conditions , 2006 .

[243]  M. Rabinovich,et al.  Ethanol production from materials containing cellulose: The potential of Russian research and development , 2006, Applied Biochemistry and Microbiology.

[244]  E. Karlsson,et al.  Evolution of a carbohydrate binding module into a protein-specific binder. , 2006, Biomolecular engineering.

[245]  D. Svergun,et al.  Dimerisation and an increase in active site aromatic groups as adaptations to high temperatures: X-ray solution scattering and substrate-bound crystal structures of Rhodothermus marinus endoglucanase Cel12A. , 2006, Journal of molecular biology.

[246]  R. Boom,et al.  Starch hydrolysis under low water conditions: A conceptual process design , 2006 .

[247]  R. Schnepf European Union Biofuels Policy and Agriculture: An Overview , 2006 .

[248]  G. Mamo,et al.  A thermostable alkaline active endo-β-1-4-xylanase from Bacillus halodurans S7: Purification and characterization , 2006 .

[249]  K. Shanmugam,et al.  Isolation and Characterization of Acid-Tolerant, Thermophilic Bacteria for Effective Fermentation of Biomass-Derived Sugars to Lactic Acid , 2006, Applied and Environmental Microbiology.

[250]  E. Boles,et al.  Microbial Cell Factories Co-utilization of L-arabinose and D-xylose by Laboratory and Industrial Saccharomyces Cerevisiae Strains , 2022 .

[251]  C. Zhao,et al.  Screening and characterization of yeasts for xylitol production , 2006, Journal of applied microbiology.

[252]  M. Ohlin,et al.  Molecular engineering of a thermostable carbohydrate-binding module , 2006 .

[253]  Abdul Hameed,et al.  Industrial applications of microbial lipases , 2006 .

[254]  Gabriel Paës,et al.  Engineering increased thermostability in the thermostable GH-11 xylanase from Thermobacillus xylanilyticus. , 2006, Journal of biotechnology.

[255]  T. Kanai,et al.  A Novel Branching Enzyme of the GH-57 Family in the Hyperthermophilic Archaeon Thermococcus kodakaraensis KOD1 , 2006, Journal of bacteriology.

[256]  Huimin Zhao,et al.  Directed evolution of enzymes and biosynthetic pathways. , 2006, Current opinion in microbiology.

[257]  R. Ladenstein,et al.  Protein disulfides and protein disulfide oxidoreductases in hyperthermophiles , 2006, The FEBS journal.

[258]  D. Brummell Cell wall disassembly in ripening fruit. , 2006, Functional plant biology : FPB.

[259]  S. Ng,et al.  Urea bonded cyclodextrin derivatives onto silica for chiral HPLC. , 2006, Journal of separation science.

[260]  T. S. Thorsen,et al.  Identification and characterization of glucoamylase from the fungus Thermomyces lanuginosus. , 2006, Biochimica et biophysica acta.

[261]  Monica Waldebäck,et al.  Subcritical water extraction and beta-glucosidase-catalyzed hydrolysis of quercetin glycosides in onion waste , 2006 .

[262]  Timothy A. G. Langrish,et al.  Water-based extraction of pectin from flavedo and albedo of orange peels , 2006 .

[263]  Prabhjeet Singh,et al.  Proizvodnja inulinaze: najnovija dostignuca , 2006 .

[264]  Aloysius F. Hartog,et al.  Laboratory-evolved Vanadium Chloroperoxidase Exhibits 100-Fold Higher Halogenating Activity at Alkaline pH , 2006, Journal of Biological Chemistry.

[265]  J. Saddler,et al.  Organosolv ethanol lignin from hybrid poplar as a radical scavenger: relationship between lignin structure, extraction conditions, and antioxidant activity. , 2006, Journal of agricultural and food chemistry.

[266]  M. Podar,et al.  New opportunities revealed by biotechnological explorations of extremophiles. , 2006, Current opinion in biotechnology.

[267]  G. Dupuis,et al.  Colon-specific drug delivery: Influence of solution reticulation properties upon pectin beads performance. , 2006, International journal of pharmaceutics.

[268]  S. Adhikari,et al.  Biorefineries: Current Status, Challenges, and Future Direction , 2006 .

[269]  Pernilla Turner,et al.  A novel variant of Thermotoga neapolitana beta-glucosidase B is an efficient catalyst for the synthesis of alkyl glucosides by transglycosylation. , 2007, Journal of biotechnology.