Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion

Actin dynamics drive morphological remodeling of neuronal dendritic spines and changes in synaptic transmission. Yet, the spatiotemporal coordination of actin regulators in spines is unknown. Using single protein tracking and super‐resolution imaging, we revealed the nanoscale organization and dynamics of branched F‐actin regulators in spines. Branched F‐actin nucleation occurs at the PSD vicinity, while elongation occurs at the tip of finger‐like protrusions. This spatial segregation differs from lamellipodia where both branched F‐actin nucleation and elongation occur at protrusion tips. The PSD is a persistent confinement zone for IRSp53 and the WAVE complex, an activator of the Arp2/3 complex. In contrast, filament elongators like VASP and formin‐like protein‐2 move outwards from the PSD with protrusion tips. Accordingly, Arp2/3 complexes associated with F‐actin are immobile and surround the PSD. Arp2/3 and Rac1 GTPase converge to the PSD, respectively, by cytosolic and free‐diffusion on the membrane. Enhanced Rac1 activation and Shank3 over‐expression, both associated with spine enlargement, induce delocalization of the WAVE complex from the PSD. Thus, the specific localization of branched F‐actin regulators in spines might be reorganized during spine morphological remodeling often associated with synaptic plasticity.

[1]  Zbyszek Otwinowski,et al.  Structure and Control of the Actin Regulatory WAVE Complex , 2010, Nature.

[2]  L. Van Aelst,et al.  The role of the Rho GTPases in neuronal development. , 2005, Genes & development.

[3]  F. Edwards Neuroscience: Dancing dendrites , 1998, Nature.

[4]  Thomas D. Pollard,et al.  Actin, a Central Player in Cell Shape and Movement , 2009, Science.

[5]  Mu-ming Poo,et al.  Shrinkage of Dendritic Spines Associated with Long-Term Depression of Hippocampal Synapses , 2004, Neuron.

[6]  A. Giangrande,et al.  CYFIP/Sra-1 Controls Neuronal Connectivity in Drosophila and Links the Rac1 GTPase Pathway to the Fragile X Protein , 2003, Neuron.

[7]  J. Sibarita,et al.  Real-Time Analysis and Visualization for Single-Molecule Based Super-Resolution Microscopy , 2013, PloS one.

[8]  Laurent Blanchoin,et al.  A “Primer”-Based Mechanism Underlies Branched Actin Filament Network Formation and Motility , 2010, Current Biology.

[9]  R. Weinberg,et al.  Regulation of Dendritic Spine Morphogenesis by Insulin Receptor Substrate 53, a Downstream Effector of Rac1 and Cdc42 Small GTPases , 2005, The Journal of Neuroscience.

[10]  R. Geffers,et al.  FMNL2 Drives Actin-Based Protrusion and Migration Downstream of Cdc42 , 2012, Current Biology.

[11]  T. Bourgeron,et al.  SHANK3 mutations identified in autism lead to modification of dendritic spine morphology via an actin-dependent mechanism , 2011, Molecular Psychiatry.

[12]  B. Pulverer EMBO Press – a new way to publish , 2014, The EMBO journal.

[13]  M. Fischer,et al.  Rapid Actin-Based Plasticity in Dendritic Spines , 1998, Neuron.

[14]  A. Matus,et al.  Activity-induced targeting of profilin and stabilization of dendritic spine morphology , 2003, Nature Neuroscience.

[15]  Venkatesh N. Murthy,et al.  Rapid turnover of actin in dendritic spines and its regulation by activity , 2002, Nature Neuroscience.

[16]  E. Betzig,et al.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics , 2008, Nature Methods.

[17]  Takeharu Nagai,et al.  Rapid and persistent modulation of actin dynamics regulates postsynaptic reorganization underlying bidirectional plasticity , 2004, Nature Neuroscience.

[18]  M. Sheetz,et al.  Periodic Lamellipodial Contractions Correlate with Rearward Actin Waves , 2004, Cell.

[19]  Michele Zoli,et al.  Targeting of the Arpc3 actin nucleation factor by miR-29a/b regulates dendritic spine morphology , 2011, The Journal of cell biology.

[20]  Daniel Choquet,et al.  Integrins β1 and β3 exhibit distinct dynamic nanoscale organizations inside focal adhesions , 2012, Nature Cell Biology.

[21]  R. Weinberg,et al.  Disruption of Arp2/3 Results in Asymmetric Structural Plasticity of Dendritic Spines and Progressive Synaptic and Behavioral Abnormalities , 2013, The Journal of Neuroscience.

[22]  J. Raber,et al.  Loss of WAVE-1 causes sensorimotor retardation and reduced learning and memory in mice , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[23]  N. Grishin,et al.  The WAVE Regulatory Complex Links Diverse Receptors to the Actin Cytoskeleton , 2014, Cell.

[24]  S. Kaech,et al.  A WAVE-1 and WRP Signaling Complex Regulates Spine Density, Synaptic Plasticity, and Memory , 2007, The Journal of Neuroscience.

[25]  M. Dahan,et al.  Wavelet analysis for single molecule localization microscopy. , 2012, Optics express.

[26]  Y. Goda,et al.  Actin in action: the interplay between the actin cytoskeleton and synaptic efficacy , 2008, Nature Reviews Neuroscience.

[27]  D. Surmeier,et al.  Kalirin-7 Controls Activity-Dependent Structural and Functional Plasticity of Dendritic Spines , 2007, Neuron.

[28]  O. Jensen,et al.  WAVE regulatory complex activation by cooperating GTPases Arf and Rac1 , 2011, Proceedings of the National Academy of Sciences.

[29]  Andrea Disanza,et al.  Abi1 is essential for the formation and activation of a WAVE2 signalling complex , 2004, Nature Cell Biology.

[30]  Ryohei Yasuda,et al.  Local, persistent activation of Rho GTPases during plasticity of single dendritic spines , 2011, Nature.

[31]  A. Trubuil,et al.  Visualization and quantification of vesicle trafficking on a three‐dimensional cytoskeleton network in living cells , 2007, Journal of microscopy.

[32]  Stephan J Sigrist,et al.  Seeing the forest tree by tree: super-resolution light microscopy meets the neurosciences , 2013, Nature Neuroscience.

[33]  Yu Song,et al.  Nanoscale Scaffolding Domains within the Postsynaptic Density Concentrate Synaptic AMPA Receptors , 2013, Neuron.

[34]  Dongeun Park,et al.  Activity-Dependent Modulation of the Interaction between CaMKIIα and Abi1 and Its Involvement in Spine Maturation , 2012, The Journal of Neuroscience.

[35]  S. Mcconnell,et al.  A central role for the small GTPase Rac1 in hippocampal plasticity and spatial learning and memory , 2009, Molecular and Cellular Neuroscience.

[36]  Sulagna Das,et al.  Polarization of actin cytoskeleton is reduced in dendritic protrusions during early spine development in hippocampal neuron , 2012, Molecular biology of the cell.

[37]  S. Gygi,et al.  Purification and architecture of the ubiquitous Wave complex. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[38]  H. C. Hartzell,et al.  ADF/Cofilin-Mediated Actin Dynamics Regulate AMPA Receptor Trafficking during Synaptic Plasticity , 2010, Nature Neuroscience.

[39]  D. Yamazaki,et al.  Optimization of WAVE2 complex–induced actin polymerization by membrane-bound IRSp53, PIP3, and Rac , 2006, The Journal of cell biology.

[40]  C. Rivera,et al.  Defining mechanisms of actin polymerization and depolymerization during dendritic spine morphogenesis , 2009, The Journal of cell biology.

[41]  A. Breman,et al.  SHANK3 overexpression causes manic-like behavior with unique pharmacogenetic properties , 2013, Nature.

[42]  Daniel Choquet,et al.  Super-Resolution Imaging Reveals That AMPA Receptors Inside Synapses Are Dynamically Organized in Nanodomains Regulated by PSD95 , 2013, The Journal of Neuroscience.

[43]  Giorgio Scita,et al.  IRSp53: crossing the road of membrane and actin dynamics in the formation of membrane protrusions. , 2008, Trends in cell biology.

[44]  Dhrubajyoti Chowdhury,et al.  Capping of the N‐terminus of PSD‐95 by calmodulin triggers its postsynaptic release , 2014, The EMBO journal.

[45]  M. Kirschner,et al.  Activation of the WAVE complex by coincident signals controls actin assembly. , 2009, Molecular cell.

[46]  X. Zhuang,et al.  Superresolution Imaging of Chemical Synapses in the Brain , 2010, Neuron.

[47]  M. Giustetto,et al.  Learning, AMPA receptor mobility and synaptic plasticity depend on n‐cofilin‐mediated actin dynamics , 2010, The EMBO journal.

[48]  Anirvan Ghosh,et al.  Inhibition of SRGAP2 Function by Its Human-Specific Paralogs Induces Neoteny during Spine Maturation , 2012, Cell.

[49]  Mriganka Sur,et al.  Structural and Molecular Remodeling of Dendritic Spine Substructures during Long-Term Potentiation , 2014, Neuron.

[50]  P. Penzes,et al.  Dendritic spine pathology in neuropsychiatric disorders , 2011, Nature Neuroscience.

[51]  A. Zucconi,et al.  Abi 1 is essential for the formation and activation of a WAVE 2 signalling complex , 2004 .

[52]  Lorene M Lanier,et al.  Mena Is Required for Neurulation and Commissure Formation , 1999, Neuron.

[53]  Gary G. Borisy,et al.  Mechanism of filopodia initiation by reorganization of a dendritic network , 2003, The Journal of cell biology.

[54]  Y. Hayashi,et al.  PIP3 Regulates Spinule Formation in Dendritic Spines during Structural Long-Term Potentiation , 2013, The Journal of Neuroscience.

[55]  K. Rottner,et al.  Sra‐1 and Nap1 link Rac to actin assembly driving lamellipodia formation , 2004, The EMBO journal.

[56]  Heike Hering,et al.  Activity-Dependent Redistribution and Essential Role of Cortactin in Dendritic Spine Morphogenesis , 2003, The Journal of Neuroscience.

[57]  T. Takenawa,et al.  IRSp53 is an essential intermediate between Rac and WAVE in the regulation of membrane ruffling , 2000, Nature.

[58]  M. Rosen,et al.  Physical mechanisms of signal integration by WASP family proteins. , 2010, Annual review of biochemistry.

[59]  G. Ellis‐Davies,et al.  Structural basis of long-term potentiation in single dendritic spines , 2004, Nature.

[60]  Christophe Zimmer,et al.  Super-Resolution Dynamic Imaging of Dendritic Spines Using a Low-Affinity Photoconvertible Actin Probe , 2011, PloS one.

[61]  Yasunori Hayashi,et al.  The roles of CaMKII and F-actin in the structural plasticity of dendritic spines: a potential molecular identity of a synaptic tag? , 2009, Physiology.

[62]  R. Yuste,et al.  Developmental regulation of spine motility in the mammalian central nervous system. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[63]  Klemens Rottner,et al.  Arp2/3 complex interactions and actin network turnover in lamellipodia , 2008, The EMBO journal.

[64]  J. Lippincott-Schwartz,et al.  Imaging Intracellular Fluorescent Proteins at Nanometer Resolution , 2006, Science.

[65]  Keiji Naruse,et al.  Rac1 Recruitment to the Archipelago Structure of the Focal Adhesion through the Fluid Membrane as Revealed by Single-Molecule Analysis , 2013, Cytoskeleton.

[66]  C. Hoogenraad,et al.  The postsynaptic architecture of excitatory synapses: a more quantitative view. , 2007, Annual review of biochemistry.

[67]  Dylan T Burnette,et al.  Myosin II functions in actin-bundle turnover in neuronal growth cones , 2006, Nature Cell Biology.

[68]  Ji Yu,et al.  Investigating Sub-Spine Actin Dynamics in Rat Hippocampal Neurons with Super-Resolution Optical Imaging , 2009, PloS one.

[69]  T. Soderling,et al.  Long-Term Potentiation-Dependent Spine Enlargement Requires Synaptic Ca2+-Permeable AMPA Receptors Recruited by CaM-Kinase I , 2010, The Journal of Neuroscience.

[70]  Daniel Choquet,et al.  The Interaction between Stargazin and PSD-95 Regulates AMPA Receptor Surface Trafficking , 2007, Neuron.

[71]  M. Heilemann,et al.  Direct stochastic optical reconstruction microscopy with standard fluorescent probes , 2011, Nature Protocols.

[72]  O. Thoumine,et al.  Neurexin-Neuroligin Adhesions Capture Surface-Diffusing AMPA Receptors through PSD-95 Scaffolds , 2011, The Journal of Neuroscience.

[73]  D. Bredt,et al.  Synaptic Targeting of the Postsynaptic Density Protein PSD-95 Mediated by Lipid and Protein Motifs , 1999, Neuron.

[74]  G. Danuser,et al.  Two Distinct Actin Networks Drive the Protrusion of Migrating Cells , 2004, Science.

[75]  Jun Noguchi,et al.  The Subspine Organization of Actin Fibers Regulates the Structure and Plasticity of Dendritic Spines , 2008, Neuron.

[76]  P. Greengard,et al.  Phosphorylation of WAVE1 regulates actin polymerization and dendritic spine morphology , 2006, Nature.

[77]  T. Boeckers,et al.  Abelson interacting protein 1 (Abi‐1) is essential for dendrite morphogenesis and synapse formation , 2007, The EMBO journal.

[78]  K. Svoboda,et al.  Experience-dependent plasticity of dendritic spines in the developing rat barrel cortex in vivo , 2000, Nature.

[79]  Guosong Liu,et al.  Regulation of Dendritic Spine Morphology and Synaptic Function by Shank and Homer , 2001, Neuron.

[80]  J. Iwasa,et al.  Spatial and Temporal Relationships between Actin-Filament Nucleation, Capping, and Disassembly , 2007, Current Biology.

[81]  M. Alpers Published online: , 2001 .

[82]  F. Perez,et al.  Local palmitoylation cycles define activity-regulated postsynaptic subdomains , 2013, The Journal of cell biology.

[83]  Yu-Chih Lin,et al.  CaMKIIβ binding to stable F-actin in vivo regulates F-actin filament stability , 2008, Proceedings of the National Academy of Sciences.

[84]  Bernardo L Sabatini,et al.  Distinct Domains within PSD-95 Mediate Synaptic Incorporation, Stabilization, and Activity-Dependent Trafficking , 2009, The Journal of Neuroscience.

[85]  K. Rottner,et al.  VASP dynamics during lamellipodia protrusion , 1999, Nature Cell Biology.

[86]  B. Behrendt,et al.  PREL1 provides a link from Ras signalling to the actin cytoskeleton via Ena/VASP proteins. , 2006, FEBS letters.

[87]  M. Uhlén,et al.  Characterization of Diaphanous-related formin FMNL2 in human tissues , 2010, BMC Cell Biology.

[88]  Yoav Freund,et al.  Lamellipodial Actin Mechanically Links Myosin Activity with Adhesion-Site Formation , 2007, Cell.

[89]  Gary G. Borisy,et al.  Antagonism between Ena/VASP Proteins and Actin Filament Capping Regulates Fibroblast Motility , 2002, Cell.

[90]  Eric A. Vitriol,et al.  Actin Capping Protein Is Required for Dendritic Spine Development and Synapse Formation , 2011, The Journal of Neuroscience.

[91]  Hari Shroff,et al.  Single-Molecule Discrimination of Discrete Perisynaptic and Distributed Sites of Actin Filament Assembly within Dendritic Spines , 2010, Neuron.

[92]  D. Webb,et al.  Vasodilator-stimulated Phosphoprotein (VASP) Induces Actin Assembly in Dendritic Spines to Promote Their Development and Potentiate Synaptic Strength* , 2010, Journal of Biological Chemistry.

[93]  T. Svitkina,et al.  Molecular Architecture of Synaptic Actin Cytoskeleton in Hippocampal Neurons Reveals a Mechanism of Dendritic Spine Morphogenesis , 2010, Molecular biology of the cell.

[94]  Rafael Yuste,et al.  Regulation of dendritic spine motility and stability by Rac1 and Rho kinase: evidence for two forms of spine motility , 2004, Molecular and Cellular Neuroscience.

[95]  J. Bockmann,et al.  ProSAP/Shank postsynaptic density proteins interact with insulin receptor tyrosine kinase substrate IRSp53 , 2002, Journal of neurochemistry.

[96]  J. Lippincott-Schwartz,et al.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy , 2008, Nature Methods.

[97]  Stefan W. Hell,et al.  Nanoscopy in a Living Mouse Brain , 2012, Science.

[98]  M K Cheezum,et al.  Quantitative comparison of algorithms for tracking single fluorescent particles. , 2001, Biophysical journal.

[99]  Linnaea E. Ostroff,et al.  CYFIP1 Coordinates mRNA Translation and Cytoskeleton Remodeling to Ensure Proper Dendritic Spine Formation , 2013, Neuron.

[100]  Shigeaki Miyamoto,et al.  IRSp53 is colocalised with WAVE2 at the tips of protruding lamellipodia and filopodia independently of Mena , 2003, Journal of Cell Science.

[101]  Yasunori Hayashi,et al.  The role of CaMKII as an F-actin-bundling protein crucial for maintenance of dendritic spine structure , 2007, Proceedings of the National Academy of Sciences.

[102]  C. Hoogenraad,et al.  Actin in dendritic spines: connecting dynamics to function , 2010, The Journal of cell biology.

[103]  Charles Kervrann,et al.  Multiple-target tracking of 3D fluorescent objects based on simulated annealing , 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

[104]  B. Behrendt,et al.  PREL1 provides a link from Ras signalling to the actin cytoskeleton via Ena/VASP proteins , 2005, FEBS letters.

[105]  K. Harris,et al.  Trans-Endocytosis via Spinules in Adult Rat Hippocampus , 2004, The Journal of Neuroscience.

[106]  Ute Curth,et al.  Molecular mechanism of Ena/VASP-mediated actin-filament elongation , 2011, The EMBO journal.

[107]  E. Fifková,et al.  Cytoplasmic actin in neuronal processes as a possible mediator of synaptic plasticity , 1982, The Journal of cell biology.

[108]  R. Weinberg,et al.  Microdomains in Forebrain Spines: an Ultrastructural Perspective , 2012, Molecular Neurobiology.

[109]  O. Weiner,et al.  Diffusion, capture and recycling of SCAR/WAVE and Arp2/3 complexes observed in cells by single-molecule imaging , 2012, Journal of Cell Science.