Detecting Irregular Curvilinear Structures in Gray Scale and Color Imagery Using Multi-directional Oriented Flux

We propose a new approach to detecting irregular curvilinear structures in noisy image stacks. In contrast to earlier approaches that rely on circular models of the cross-sections, ours allows for the arbitrarily-shaped ones that are prevalent in biological imagery. This is achieved by maximizing the image gradient flux along multiple directions and radii, instead of only two with a unique radius as is usually done. This yields a more complex optimization problem for which we propose a computationally efficient solution. We demonstrate the effectiveness of our approach on a wide range of challenging gray scale and color datasets and show that it outperforms existing techniques, especially on very irregular structures.

[1]  Max W. K. Law,et al.  An Oriented Flux Symmetry Based Active Contour Model for Three Dimensional Vessel Segmentation , 2010, ECCV.

[2]  Mathews Jacob,et al.  Design of steerable filters for feature detection using canny-like criteria , 2004, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[3]  Tony Lindeberg,et al.  Edge Detection and Ridge Detection with Automatic Scale Selection , 1996, Proceedings CVPR IEEE Computer Society Conference on Computer Vision and Pattern Recognition.

[4]  Gene H. Golub,et al.  Some modified matrix eigenvalue problems , 1973, Milestones in Matrix Computation.

[5]  Erik L. Ritman,et al.  Automation of Hessian-Based Tubularity Measure Response Function in 3D Biomedical Images , 2011, Int. J. Biomed. Imaging.

[6]  Edward H. Adelson,et al.  The Design and Use of Steerable Filters , 1991, IEEE Trans. Pattern Anal. Mach. Intell..

[7]  Guido Gerig,et al.  Three-dimensional multi-scale line filter for segmentation and visualization of curvilinear structures in medical images , 1998, Medical Image Anal..

[8]  Laurent D. Cohen,et al.  Tubular Structure Segmentation Based on Minimal Path Method and Anisotropic Enhancement , 2011, International Journal of Computer Vision.

[9]  J. Lichtman,et al.  3D Multicolor Super-Resolution Imaging Offers Improved Accuracy in Neuron Tracing , 2012, PloS one.

[10]  I. Kakadiaris,et al.  Towards Segmentation of Irregular Tubular Structures in 3 D Confocal Microscope Images , 2006 .

[11]  Mathews Jacob,et al.  Three-dimensional feature detection using optimal steerable filters , 2005, IEEE International Conference on Image Processing 2005.

[12]  Eugene W. Myers,et al.  Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models , 2011, Neuroinformatics.

[13]  Badrinath Roysam,et al.  Robust 3-D Modeling of Vasculature Imagery Using Superellipsoids , 2007, IEEE Transactions on Medical Imaging.

[14]  Laurent D. Cohen,et al.  Grouping connected components using minimal path techniques. Application to reconstruction of vessels in 2D and 3D images , 2001, Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition. CVPR 2001.

[15]  Pascal Fua,et al.  Automated reconstruction of tree structures using path classifiers and Mixed Integer Programming , 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

[16]  Xin Wang,et al.  Airport Detection in Remote Sensing Images Based on Visual Attention , 2011, ICONIP.

[17]  Max W. K. Law,et al.  Three Dimensional Curvilinear Structure Detection Using Optimally Oriented Flux , 2008, ECCV.

[18]  E Meijering,et al.  Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images , 2004, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[19]  R. W. Draft,et al.  Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system , 2007, Nature.

[20]  Anthony J. Yezzi,et al.  Vessels as 4-D Curves: Global Minimal 4-D Paths to Extract 3-D Tubular Surfaces and Centerlines , 2007, IEEE Transactions on Medical Imaging.

[21]  Guido Gerig,et al.  3D Multi-scale line filter for segmentation and visualization of curvilinear structures in medical images , 1997, CVRMed.

[22]  Pascal Fua,et al.  Steerable Features for Statistical 3D Dendrite Detection , 2009, MICCAI.

[23]  Yoshinobu Sato,et al.  A Hessian-based filter for vascular segmentation of noisy hepatic CT scans , 2012, International Journal of Computer Assisted Radiology and Surgery.

[24]  Alejandro F. Frangi,et al.  Muliscale Vessel Enhancement Filtering , 1998, MICCAI.