Strength limit of entropic elasticity in beta-sheet protein domains.

Elasticity and strength of individual beta-sheet protein domains govern key biological functions and the mechanical properties of biopolymers including spider silk, amyloids, and muscle fibers. The worm-like-chain (WLC) model is commonly used to describe the entropic elasticity of polypeptides and other biomolecules. However, force spectroscopy experiments have shown pronounced deviations from the ideal WLC behavior, leading to controversial views about the appropriate elastic description of proteins at nanoscale. Here we report a simple model that explains the physical mechanism that leads to the breakdown of the WLC idealization in experiments by using only two generic parameters of the protein domain, the H-bond energy and the protein backbone's persistence length. We show that a rupture initiation condition characterized by the free energy release rate of H-bonds characterizes the limit of WLC entropic elasticity of beta-sheet protein domains and the onset of rupture. Our findings reveal that strength and elasticity are coupled and cannot be treated separately. The predictions of the model are compared with atomic force microscopy experiments of protein rupture.

[1]  S. Jarvis,et al.  Nanoscale Mechanical Characterisation of Amyloid Fibrils Discovered in a Natural Adhesive , 2006, Journal of biological physics.

[2]  K. Schulten,et al.  The key event in force-induced unfolding of Titin's immunoglobulin domains. , 2000, Biophysical journal.

[3]  Matthias Rief,et al.  Elastically Coupled Two-Level Systems as a Model for Biopolymer Extensibility , 1998 .

[4]  H. Hansma,et al.  Segmented nanofibers of spider dragline silk: Atomic force microscopy and single-molecule force spectroscopy , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[5]  Rob Phillips,et al.  High flexibility of DNA on short length scales probed by atomic force microscopy , 2006, Nature nanotechnology.

[6]  Michele Vendruscolo,et al.  Role of Intermolecular Forces in Defining Material Properties of Protein Nanofibrils , 2007, Science.

[7]  Samrat Mukhopadhyay,et al.  Single-molecule biophysics: at the interface of biology, physics and chemistry , 2008, Journal of The Royal Society Interface.

[8]  Emanuele Paci,et al.  Pulling geometry defines the mechanical resistance of a β-sheet protein , 2003, Nature Structural Biology.

[9]  E. Evans,et al.  Dynamic strength of molecular adhesion bonds. , 1997, Biophysical journal.

[10]  Andres F. Oberhauser,et al.  The molecular elasticity of the extracellular matrix protein tenascin , 1998, Nature.

[11]  K. Schulten,et al.  Steered molecular dynamics and mechanical functions of proteins. , 2001, Current opinion in structural biology.

[12]  A. Nagy,et al.  Reversible Mechanical Unzipping of Amyloid β-Fibrils* , 2005, Journal of Biological Chemistry.

[13]  M. Rief,et al.  The mechanical stability of immunoglobulin and fibronectin III domains in the muscle protein titin measured by atomic force microscopy. , 1998, Biophysical journal.

[14]  Markus J. Buehler,et al.  Hierarchies, multiple energy barriers, and robustness govern the fracture mechanics of α-helical and β-sheet protein domains , 2007, Proceedings of the National Academy of Sciences.

[15]  G. I. Bell Models for the specific adhesion of cells to cells. , 1978, Science.

[16]  Markus J Buehler,et al.  Geometric confinement governs the rupture strength of H-bond assemblies at a critical length scale. , 2008, Nano letters.

[17]  K. Schulten,et al.  Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation. , 1998, Biophysical journal.

[18]  Klaus Schulten,et al.  Mechanical strength of the titin Z1Z2-telethonin complex. , 2006, Structure.

[19]  Markus J. Buehler,et al.  Asymptotic strength limit of hydrogen-bond assemblies in proteins at vanishing pulling rates. , 2008 .

[20]  Mario Viani,et al.  Molecular mechanistic origin of the toughness of natural adhesives, fibres and composites , 1999, Nature.

[21]  Klaus Schulten,et al.  Mechanical unfolding intermediates in titin modules , 1999, Nature.

[22]  K. Schulten,et al.  Single-Molecule Experiments in Vitro and in Silico , 2007, Science.

[23]  A. A. Griffith The Phenomena of Rupture and Flow in Solids , 1921 .

[24]  M. Rief,et al.  Reversible unfolding of individual titin immunoglobulin domains by AFM. , 1997, Science.

[25]  Markus J Buehler,et al.  Entropic elasticity controls nanomechanics of single tropocollagen molecules. , 2007, Biophysical journal.

[26]  A. Oberhauser,et al.  The study of protein mechanics with the atomic force microscope. , 1999, Trends in biochemical sciences.

[27]  Christopher M Dobson,et al.  Characterization of the nanoscale properties of individual amyloid fibrils , 2006, Proceedings of the National Academy of Sciences.

[28]  R. Merkel,et al.  Energy landscapes of receptor–ligand bonds explored with dynamic force spectroscopy , 1999, Nature.

[29]  S. Smith,et al.  Single-molecule studies of DNA mechanics. , 2000, Current opinion in structural biology.