Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays.
暂无分享,去创建一个
Gunnar Rätsch | Detlef Weigel | Korbinian Schneeberger | Richard M. Clark | Georg Zeller | G. Zeller | G. Rätsch | A. Bohlen | D. Weigel | K. Schneeberger | Richard M Clark | Anja Bohlen | Korbinian Schneeberger
[1] William H. Majoros,et al. A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome , 2002, Science.
[2] M. Olivier. A haplotype map of the human genome. , 2003, Nature.
[3] D. Bartel,et al. MicroRNAS and their regulatory roles in plants. , 2006, Annual review of plant biology.
[4] S Rozen,et al. Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.
[5] M. Kreitman,et al. A Genome-Wide Survey of R Gene Polymorphisms in Arabidopsis[W] , 2006, The Plant Cell Online.
[6] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[7] Robert Giegerich,et al. A discipline of dynamic programming over sequence data , 2004, Sci. Comput. Program..
[8] Gunnar Rätsch,et al. Improving the Caenorhabditis elegans Genome Annotation Using Machine Learning , 2006, PLoS Comput. Biol..
[9] J. Dangl,et al. Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance , 1995, Science.
[10] The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.
[11] Vladimir N. Vapnik,et al. The Nature of Statistical Learning Theory , 2000, Statistics for Engineering and Information Science.
[12] Jian-Qun Chen,et al. Unique Evolutionary Mechanism in R-Genes Under the Presence/Absence Polymorphism in Arabidopsis thaliana , 2006, Genetics.
[13] T. Mitchell-Olds,et al. A Multilocus Sequence Survey in Arabidopsis thaliana Reveals a Genome-Wide Departure From a Neutral Model of DNA Sequence Polymorphism , 2005, Genetics.
[14] Kenneth L. McNally,et al. Sequencing Multiple and Diverse Rice Varieties. Connecting Whole-Genome Variation with Phenotypes , 2006, Plant Physiology.
[15] Walter Fontana,et al. Fast folding and comparison of RNA secondary structures , 1994 .
[16] S. Karlin,et al. Prediction of complete gene structures in human genomic DNA. , 1997, Journal of molecular biology.
[17] K. Frazer,et al. Common deletions and SNPs are in linkage disequilibrium in the human genome , 2006, Nature Genetics.
[18] M. Gribskov,et al. The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) , 2006, Science.
[19] S. P. Fodor,et al. Blocks of Limited Haplotype Diversity Revealed by High-Resolution Scanning of Human Chromosome 21 , 2001, Science.
[20] Li-li Chen,et al. A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21 , 1995, Science.
[21] Ryan E. Mills,et al. An initial map of insertion and deletion (INDEL) variation in the human genome. , 2006, Genome research.
[22] Detlef Weigel,et al. Recombination and linkage disequilibrium in Arabidopsis thaliana , 2007, Nature Genetics.
[23] M. Daly,et al. Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6 mb of mouse genome. , 2004, Genome research.
[24] Terence P. Speed,et al. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..
[25] Richard M. Clark,et al. The Evolution of Selfing in Arabidopsis thaliana , 2007, Science.
[26] J. Shendure,et al. Advanced sequencing technologies: methods and goals , 2004, Nature Reviews Genetics.
[27] Mattias Jakobsson,et al. The Pattern of Polymorphism in Arabidopsis thaliana , 2005, PLoS biology.
[28] B. Gaut,et al. Molecular population genetics and the search for adaptive evolution in plants. , 2005, Molecular biology and evolution.
[29] Gunnar Rätsch,et al. Large Scale Hidden Semi-Markov SVMs , 2006, NIPS.
[30] W. Gish,et al. Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map , 2001, Nature Genetics.
[31] Koby Crammer,et al. Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction , 2007, PLoS Comput. Biol..
[32] Stijn van Dongen,et al. miRBase: microRNA sequences, targets and gene nomenclature , 2005, Nucleic Acids Res..
[33] M. Grant,et al. Independent deletions of a pathogen-resistance gene in Brassica and Arabidopsis. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[34] Geoffrey B. Nilsen,et al. Whole-Genome Patterns of Common DNA Variation in Three Human Populations , 2005, Science.
[35] Corinna Cortes,et al. Support-Vector Networks , 1995, Machine Learning.
[36] A Chakravarti,et al. High-throughput variation detection and genotyping using microarrays. , 2001, Genome research.
[37] Curtis E. Dyreson,et al. Genome analysis Athena : a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences , 2005 .
[38] Andrew McCallum,et al. Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data , 2001, ICML.
[39] M. Eisenstein,et al. Moving forward in reverse , 2005, Nature Methods.
[40] Gunnar Rätsch,et al. An introduction to kernel-based learning algorithms , 2001, IEEE Trans. Neural Networks.
[41] Jonathan D. G. Jones,et al. The plant immune system , 2006, Nature.
[42] Kenneth O. Kortanek,et al. Semi-Infinite Programming: Theory, Methods, and Applications , 1993, SIAM Rev..
[43] Richard M. Clark,et al. Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana , 2007, Science.
[44] James L. Winkler,et al. Accessing Genetic Information with High-Density DNA Arrays , 1996, Science.
[45] Jason S. Cumbie,et al. High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes , 2007, PloS one.
[46] nhnguyen,et al. Comparisons of Sequence Labeling Algorithms and Extensions , 2007 .
[47] P Sham,et al. A SNP resource for human chromosome 22: extracting dense clusters of SNPs from the genomic sequence. , 2001, Genome research.
[48] James H. Thomas. Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plants. , 2006, Genome research.
[49] Detlef Weigel,et al. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana , 2007, Proceedings of the National Academy of Sciences.
[50] Gunnar Rätsch,et al. PALMA: mRNA to genome alignments using large margin algorithms , 2007, Bioinform..
[51] Brian D Athey,et al. Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray. , 2004, Nucleic acids research.
[52] Bernhard Schölkopf,et al. Learning with kernels , 2001 .
[53] I. Longden,et al. EMBOSS: the European Molecular Biology Open Software Suite. , 2000, Trends in genetics : TIG.
[54] J. Vrebalov,et al. S Locus Genes and the Evolution of Self-Fertility in Arabidopsis thaliana[W] , 2007, The Plant Cell Online.
[55] Thomas Hofmann,et al. Hidden Markov Support Vector Machines , 2003, ICML.
[56] T. Mitchell-Olds,et al. Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana. , 2003, Genome research.
[57] Uwe Ohler,et al. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[58] D. Blanchard. Moving forward in reverse , 2005 .
[59] M. Olivier. A haplotype map of the human genome , 2003, Nature.
[60] Eleazar Eskin,et al. A sequence-based variation map of 8.27 million SNPs in inbred mouse strains , 2007, Nature.
[61] Keyan Zhao,et al. A Nonparametric Test Reveals Selection for Rapid Flowering in the Arabidopsis Genome , 2006, PLoS biology.
[62] Sean R. Eddy,et al. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids , 1998 .
[63] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[64] D. Bartel,et al. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. , 2006, Genes & development.
[65] Gunnar Rätsch,et al. Sparse Regression Ensembles in Infinite and Finite Hypothesis Spaces , 2002, Machine Learning.
[66] Christian E. V. Storm,et al. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. , 2001, Journal of molecular biology.
[67] Thomas Hofmann,et al. Large Margin Methods for Structured and Interdependent Output Variables , 2005, J. Mach. Learn. Res..
[68] Joseph R. Ecker,et al. Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis , 2006, Nature Reviews Genetics.
[69] S. Gebauer-Jung,et al. Partial Shotgun Sequencing of the Boechera stricta Genome Reveals Extensive Microsynteny and Promoter Conservation with Arabidopsis1[W] , 2006, Plant Physiology.
[70] R. Amasino,et al. Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time. , 2000, Science.
[71] Lawrence K. Saul,et al. Large Margin Hidden Markov Models for Automatic Speech Recognition , 2006, NIPS.
[72] Ben Taskar,et al. Max-Margin Markov Networks , 2003, NIPS.