Comparison of prokaryotes between Mount Everest and the Mariana Trench
暂无分享,去创建一个
Keshao Liu | Weishu Zhao | M. Ji | H. Jing | Yongqin Liu | Xiang Xiao | Zhihao Zhang | Aoran Hu | Jing Wang | Mukan Ji
[1] E. Forte,et al. Antarctic Salt-Cones: An Oasis of Microbial Life? The Example of Boulder Clay Glacier (Northern Victoria Land) , 2022, Microorganisms.
[2] Songnian Hu,et al. A genome and gene catalog of glacier microbiomes , 2022, Nature Biotechnology.
[3] Xi Xiao,et al. Composition and Ecological Roles of the Core Microbiome along the Abyssal-Hadal Transition Zone Sediments of the Mariana Trench , 2022, Microbiology spectrum.
[4] Yuu Hirose,et al. Metagenomics reveals global-scale contrasts in nitrogen cycling and cyanobacterial light-harvesting mechanisms in glacier cryoconite , 2022, Microbiome.
[5] P. Mara,et al. Microbiomes in the Challenger Deep slope and bottom-axis sediments , 2022, Nature Communications.
[6] Shi-chang Kang,et al. Supplementary material to "A comprehensive dataset of microbial abundance, dissolved organic carbon, and nitrogen in Tibetan Plateau glaciers" , 2022, Earth System Science Data.
[7] F. Chen,et al. Novel Viral Communities Potentially Assisting in Carbon, Nitrogen, and Sulfur Metabolism in the Upper Slope Sediments of Mariana Trench , 2022, mSystems.
[8] Haiwei Luo,et al. Prochlorococcus have low global mutation rate and small effective population size , 2021, Nature Ecology & Evolution.
[9] Luis Pedro Coelho,et al. Towards the biogeography of prokaryotic genes , 2021, Nature.
[10] Weishu Zhao,et al. The Capability of Utilizing Abiotic Enantiomers of Amino Acids by Halomonas sp. LMO_D1 Derived From the Mariana Trench , 2021, Frontiers in Astronomy and Space Sciences.
[11] W. Shu,et al. Microbial diversity in extreme environments , 2021, Nature Reviews Microbiology.
[12] Geng Tian,et al. Evaluation of the MGISEQ-2000 Sequencing Platform for Illumina Target Capture Sequencing Libraries , 2021, Frontiers in Genetics.
[13] D. Scanlan,et al. Acrylate protects a marine bacterium from grazing by a ciliate predator , 2021, Nature Microbiology.
[14] E. Mosley‐Thompson,et al. Glacier ice archives nearly 15,000-year-old microbes and phages , 2021, Microbiome.
[15] S. Louca,et al. The rates of global bacterial and archaeal dispersal , 2021, The ISME Journal.
[16] Jia Li,et al. Revealing the full biosphere structure and versatile metabolic functions in the deepest ocean sediment of the Challenger Deep , 2021, Genome Biology.
[17] P. Bork,et al. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation , 2021, Nucleic Acids Res..
[18] Indrajeet Patil,et al. ggsignif: R Package for Displaying Significance Brackets for 'ggplot2' , 2021 .
[19] Qi-Long Qin,et al. Oxidation of trimethylamine to trimethylamine N-oxide facilitates high hydrostatic pressure tolerance in a generalist bacterial lineage , 2021, Science Advances.
[20] M. Fukui,et al. Dissulfurispira thermophila gen. nov., sp. nov., a thermophilic chemolithoautotroph growing by sulfur disproportionation, and proposal of novel taxa in the phylum Nitrospirota to reclassify the genus Thermodesulfovibrio. , 2021, Systematic and applied microbiology.
[21] M. Guglielmin,et al. Prokaryotic Diversity and Metabolically Active Communities in Brines from Two Perennially Ice-Covered Antarctic Lakes. , 2021, Astrobiology.
[22] J. Biddle,et al. Helarchaeota and co-occurring sulfate-reducing bacteria in subseafloor sediments from the Costa Rica Margin , 2021, ISME Communications.
[23] Xiang Xiao,et al. Hydrostatic pressure is the universal key driver of microbial evolution in the deep ocean and beyond. , 2021, Environmental microbiology reports.
[24] Haiwei Luo,et al. Unexpectedly high mutation rate of a deep-sea hyperthermophilic anaerobic archaeon , 2020, The ISME Journal.
[25] J. Fuhrman,et al. Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns , 2020, Proceedings of the National Academy of Sciences.
[26] J. Priscu,et al. Glacial Ecosystems , 2021 .
[27] Harald R. Gruber-Vodicka,et al. phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes , 2020, mSystems.
[28] Xiaohua Zhang,et al. Bacteria are important dimethylsulfoniopropionate producers in marine aphotic and high-pressure environments , 2020, Nature Communications.
[29] T. Morvan,et al. A comprehensive dataset on nitrate, Nitrite and dissolved organic carbon leaching losses from a 4-year Lysimeter study , 2020, Data in brief.
[30] Yanxu Zhang,et al. Methylmercury produced in upper oceans accumulates in deep Mariana Trench fauna , 2020, Nature Communications.
[31] Donovan H. Parks,et al. A complete domain-to-species taxonomy for Bacteria and Archaea , 2020, Nature Biotechnology.
[32] P. Yancey. Cellular responses in marine animals to hydrostatic pressure. , 2020, Journal of experimental zoology. Part A, Ecological and integrative physiology.
[33] P. Bork,et al. Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity , 2020, The ISME Journal.
[34] Amy K. Schmid,et al. SnapShot: Microbial Extremophiles , 2020, Cell.
[35] S. Charette,et al. Annual bacterial community cycle in a seasonally ice‐covered river reflects environmental and climatic conditions , 2020, Limnology and Oceanography.
[36] Donovan H Parks,et al. GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database , 2019, Bioinform..
[37] K. Takai. Recent Topics on Deep-Sea Microbial Communities in Microbes and Environments , 2019, Microbes and environments.
[38] Xiaohua Zhang,et al. Biogenic production of DMSP and its degradation to DMS—their roles in the global sulfur cycle , 2019, Science China Life Sciences.
[39] A. Shade,et al. A global survey of arsenic-related genes in soil microbiomes , 2019, BMC Biology.
[40] V. Acharya,et al. Complete genome sequence of Pseudomonas frederiksbergensis ERDD5:01 revealed genetic bases for survivability at high altitude ecosystem and bioprospection potential. , 2019, Genomics.
[41] Guoyong Yan,et al. Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation , 2019, Nature Ecology & Evolution.
[42] Mingchao Yu,et al. Proliferation of hydrocarbon-degrading microbes at the bottom of the Mariana Trench , 2019, Microbiome.
[43] Hiroyuki Ogata,et al. KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold , 2019, bioRxiv.
[44] Feng Li,et al. MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies , 2019, PeerJ.
[45] Nancy Merino,et al. Living at the Extremes: Extremophiles and the Limits of Life in a Planetary Context , 2019, Front. Microbiol..
[46] Xiaohua Zhang,et al. Novel Insights Into Bacterial Dimethylsulfoniopropionate Catabolism in the East China Sea , 2018, Front. Microbiol..
[47] Yihui Xie,et al. knitr: A Comprehensive Tool for Reproducible Research in R , 2018, Implementing Reproducible Research.
[48] Zhuang Han,et al. Periodic and Spatial Spreading of Alkanes and Alcanivorax Bacteria in Deep Waters of the Mariana Trench , 2018, Applied and Environmental Microbiology.
[49] Alexander J Probst,et al. Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy , 2017, Nature Microbiology.
[50] T. Fukui,et al. Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench , 2018, Microbes and environments.
[51] Michaeline B. N. Albright,et al. Function and functional redundancy in microbial systems , 2018, Nature Ecology & Evolution.
[52] E. Allen,et al. Vertically distinct microbial communities in the Mariana and Kermadec trenches , 2018, PloS one.
[53] S. Amalfitano,et al. Bacterial community structure along the subtidal sandy sediment belt of a high Arctic fjord (Kongsfjorden, Svalbard Islands). , 2018, The Science of the total environment.
[54] R. Amann,et al. Unveiling the enigma of refractory carbon in the ocean , 2018 .
[55] B. Mueller. Preliminary trace element analysis of arsenic in Nepalese groundwater may pinpoint its origin , 2018, Environmental Earth Sciences.
[56] C. Santini,et al. High Hydrostatic Pressure Inducible Trimethylamine N-Oxide Reductase Improves the Pressure Tolerance of Piezosensitive Bacteria Vibrio fluvialis , 2018, Front. Microbiol..
[57] E. Bremer,et al. Arsenobetaine: an ecophysiologically important organoarsenical confers cytoprotection against osmotic stress and growth temperature extremes , 2018, Environmental microbiology.
[58] Natalia N. Ivanova,et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea , 2017, Nature Biotechnology.
[59] J. Banfield,et al. dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication , 2017, The ISME Journal.
[60] H. Ochman,et al. The Evolution of Bacterial Genome Architecture , 2017, Front. Genet..
[61] Xuefa Shi,et al. Provenances, distribution, and accumulation of organic matter in the southern Mariana Trench rim and slope: Implication for carbon cycle and burial in hadal trenches , 2017 .
[62] Gaël Many,et al. Glacier inputs influence organic matter composition and prokaryotic distribution in a high Arctic fjord (Kongsfjorden, Svalbard) , 2016 .
[63] Ya Ping Liu,et al. Differences in Bacterial Diversity and Communities Between Glacial Snow and Glacial Soil on the Chongce Ice Cap, West Kunlun Mountains , 2016, Scientific Reports.
[64] G. Tyson,et al. Genome-centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion. , 2016, Environmental microbiology.
[65] F. Inagaki,et al. A Modified SDS-Based DNA Extraction Method for High Quality Environmental DNA from Seafloor Environments , 2016, Front. Microbiol..
[66] S. de Vries,et al. Characterization of Anammox Hydrazine Dehydrogenase, a Key N2-producing Enzyme in the Global Nitrogen Cycle* , 2016, The Journal of Biological Chemistry.
[67] Måns Magnusson,et al. MultiQC: summarize analysis results for multiple tools and samples in a single report , 2016, Bioinform..
[68] D. Bartlett,et al. Identification of Free-Living and Particle-Associated Microbial Communities Present in Hadal Regions of the Mariana Trench , 2016, Front. Microbiol..
[69] C. Mayer,et al. Light-dependent microbial metabolisms drive carbon fluxes on glacier surfaces , 2016, The ISME Journal.
[70] Brian C. Thomas,et al. A new view of the tree of life , 2016, Nature Microbiology.
[71] Blake A. Simmons,et al. MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets , 2016, Bioinform..
[72] Yan Zhang,et al. Comparative genomics reveals new evolutionary and ecological patterns of selenium utilization in bacteria , 2016, The ISME Journal.
[73] Yuguang Zhou,et al. Sphingomonas psychrolutea sp. nov., a psychrotolerant bacterium isolated from glacier ice. , 2015, International journal of systematic and evolutionary microbiology.
[74] A. Anesio,et al. Microbial diversity on Icelandic glaciers and ice caps , 2015, Front. Microbiol..
[75] R. Sletten,et al. Diversity and potential sources of microbiota associated with snow on western portions of the Greenland Ice Sheet. , 2015, Environmental microbiology.
[76] N. Yoshida,et al. Hadal biosphere: Insight into the microbial ecosystem in the deepest ocean on Earth , 2015, Proceedings of the National Academy of Sciences.
[77] Kunihiko Sadakane,et al. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph , 2014, Bioinform..
[78] V. Gladyshev,et al. Selenoproteins: molecular pathways and physiological roles. , 2014, Physiological reviews.
[79] Brian Bushnell,et al. BBMap: A Fast, Accurate, Splice-Aware Aligner , 2014 .
[80] K. Konstantinidis,et al. Bypassing Cultivation To Identify Bacterial Species: Culture-independent genomic approaches identify credibly distinct clusters, avoid cultivation bias, and provide true insights into microbial species , 2014 .
[81] Wei Shi,et al. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..
[82] D. Canfield,et al. High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth , 2013 .
[83] K. Konstantinidis,et al. Microbiome of the upper troposphere: Species composition and prevalence, effects of tropical storms, and atmospheric implications , 2012, Proceedings of the National Academy of Sciences.
[84] Pelin Yilmaz,et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..
[85] G. Barker,et al. Photophysiology and albedo-changing potential of the ice algal community on the surface of the Greenland ice sheet , 2012, The ISME Journal.
[86] P. Bonasoni,et al. Environmental conditions at the South Col of Mount Everest and their impact on hypoxia and hypothermia experienced by mountaineers , 2012, Extreme Physiology & Medicine.
[87] Edward C. Uberbacher,et al. Gene and translation initiation site prediction in metagenomic sequences , 2012, Bioinform..
[88] T. Thomas,et al. Bacterial community assembly based on functional genes rather than species , 2011, Proceedings of the National Academy of Sciences.
[89] T. Yao,et al. Microbial diversity in the snow, a moraine lake and a stream in Himalayan glacier , 2011, Extremophiles.
[90] G. Griffith,et al. Possible interactions between bacterial diversity, microbial activity and supraglacial hydrology of cryoconite holes in Svalbard , 2011, The ISME Journal.
[91] Guangli Yang,et al. Bacterial community in the East Rongbuk Glacier, Mt. Qomolangma (Everest) by culture and culture-independent methods. , 2010, Microbiological research.
[92] Eduardo P. C. Rocha,et al. The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics , 2010, PLoS genetics.
[93] Miriam L. Land,et al. Trace: Tennessee Research and Creative Exchange Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification Recommended Citation Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification , 2022 .
[94] T. Yao,et al. Bacterial diversity in the snow over Tibetan Plateau Glaciers , 2009, Extremophiles.
[95] B. Roe,et al. A core gut microbiome in obese and lean twins , 2008, Nature.
[96] Jiawen Ren,et al. Atmospheric pollution for trace elements in the remote high-altitude atmosphere in central Asia as recorded in snow from Mt. Qomolangma (Everest) of the Himalayas. , 2008, The Science of the total environment.
[97] Peer Bork,et al. Genome-Wide Experimental Determination of Barriers to Horizontal Gene Transfer , 2007, Science.
[98] W. Verstraete,et al. Quantifying Community Dynamics of Nitrifiers in Functionally Stable Reactors , 2007, Applied and Environmental Microbiology.
[99] D. Qin,et al. Spatial and seasonal variations of elemental composition in Mt. Everest (Qomolangma) snow/firn , 2007 .
[100] K. Shichang,et al. Microbial community structure in major habitats above 6000 m on Mount Everest , 2007 .
[101] J. Priscu,et al. Bacterial Diversity Associated with Blood Falls, a Subglacial Outflow from the Taylor Glacier, Antarctica , 2007, Applied and Environmental Microbiology.
[102] S. Tringe,et al. Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments , 2007, Science.
[103] T. Yao,et al. Microbial community structure in moraine lakes and glacial meltwaters, Mount Everest. , 2006, FEMS microbiology letters.
[104] K. Kaštovská,et al. Microbial Communities on Glacier Surfaces in Svalbard: Impact of Physical and Chemical Properties on Abundance and Structure of Cyanobacteria and Algae , 2006, Microbial Ecology.
[105] T. Yao,et al. Seasonal variation of snow microbial community structure in the East Rongbuk glacier, Mt. Everest , 2006 .
[106] K. Hattori,et al. Occurrence of arsenic (V) in forearc mantle serpentinites based on X-ray absorption spectroscopy study , 2005 .
[107] V. Miteva,et al. Detection and Isolation of Ultrasmall Microorganisms from a 120,000-Year-Old Greenland Glacier Ice Core , 2005, Applied and Environmental Microbiology.
[108] J. Kohler,et al. The High Arctic glacial ecosystem: new insights from nutrient budgets , 2005 .
[109] L. Øvreås,et al. Prokaryotic Diversity--Magnitude, Dynamics, and Controlling Factors , 2002, Science.
[110] L. Rothschild,et al. Life in extreme environments , 2001, Nature.
[111] D. White,et al. Preface to special issue on Sphingomonas , 1999, Journal of Industrial Microbiology and Biotechnology.
[112] J. Neff. Ecotoxicology of arsenic in the marine environment , 1997 .
[113] J. Battista,et al. Against all odds: the survival strategies of Deinococcus radiodurans. , 1997, Annual review of microbiology.
[114] M. Riley,et al. Evolution of the bacterial genome. , 1978, Annual review of microbiology.