Functional Protein Dynamics Directly from Sequences
暂无分享,去创建一个
[1] K. Kaneko,et al. Dynamics-Evolution Correspondence in Protein Structures. , 2021, Physical review letters.
[2] Gyu Rie Lee,et al. Accurate prediction of protein structures and interactions using a 3-track neural network , 2021, Science.
[3] Oriol Vinyals,et al. Highly accurate protein structure prediction with AlphaFold , 2021, Nature.
[4] Daniele Granata,et al. Patterns of coevolving amino acids unveil structural and dynamical domains , 2017, Proceedings of the National Academy of Sciences.
[5] David Baker,et al. Origins of coevolution between residues distant in protein 3D structures , 2017, Proceedings of the National Academy of Sciences.
[6] A. Valencia,et al. From residue coevolution to protein conformational ensembles and functional dynamics , 2015, Proceedings of the National Academy of Sciences.
[7] Xin-Qiu Yao,et al. Integrating protein structural dynamics and evolutionary analysis with Bio3D , 2014, BMC Bioinformatics.
[8] Sudhir Kumar,et al. Structural dynamics flexibility informs function and evolution at a proteome scale , 2013, Evolutionary applications.
[9] Thomas A. Hopf,et al. Protein structure prediction from sequence variation , 2012, Nature Biotechnology.
[10] I. Bahar,et al. Sequence Evolution Correlates with Structural Dynamics , 2012, Molecular biology and evolution.
[11] C. Sander,et al. Direct-coupling analysis of residue coevolution captures native contacts across many protein families , 2011, Proceedings of the National Academy of Sciences.
[12] Guang Song,et al. How well can we understand large-scale protein motions using normal modes of elastic network models? , 2007, Biophysical journal.
[13] Leo S. D. Caves,et al. Bio3d: an R package for the comparative analysis of protein structures , 2006, Bioinform..
[14] Taner Z Sen,et al. The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models. , 2006, Journal of chemical theory and computation.
[15] Robert L. Jernigan,et al. Dynamics of large proteins through hierarchical levels of coarse‐grained structures , 2002, J. Comput. Chem..
[16] A. Amadei,et al. On the convergence of the conformational coordinates basis set obtained by the essential dynamics analysis of proteins' molecular dynamics simulations , 1999, Proteins.
[17] A. Atilgan,et al. Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. , 1997, Folding & design.
[18] Tirion,et al. Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis. , 1996, Physical review letters.
[19] D. ben-Avraham,et al. Dynamic and elastic properties of F-actin: a normal-modes analysis. , 1995, Biophysical journal.
[20] H. Berendsen,et al. Essential dynamics of proteins , 1993, Proteins.
[21] Robert L Jernigan,et al. The use of experimental structures to model protein dynamics. , 2015, Methods in molecular biology.
[22] Fatih Nuray,et al. the convergence , 2011 .
[23] R. Jernigan,et al. Anisotropy of fluctuation dynamics of proteins with an elastic network model. , 2001, Biophysical journal.
[24] A. R. Wagner. Molecular Biology and Evolution , 2001 .
[25] L. Holm,et al. Pfam : the protein families database , 2022 .