An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH
暂无分享,去创建一个
J. Blom | J. Kalinowski | D. Wibberg | A. Berry | T. Nguyen | K. Pawlowski | Kai Battenberg | B. V. Vanden Heuvel
[1] D. R. Hoagland,et al. The Water-Culture Method for Growing Plants Without Soil , 2018 .
[2] K. Morris,et al. Permanent Draft Genome Sequence for Frankia sp. Strain CeD, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina equistifolia Grown in Senegal , 2016, Genome Announcements.
[3] K. Morris,et al. Permanent Draft Genome Sequences for Two Variants of Frankia sp. Strain CpI1, the First Frankia Strain Isolated from Root Nodules of Comptonia peregrina , 2016, Genome Announcements.
[4] K. Morris,et al. Permanent draft genome sequence of Frankia sp. strain AvcI1, a nitrogen-fixing actinobacterium isolated from the root nodules of Alnus viridis subsp. crispa grown in Canada , 2017 .
[5] Stefan P. Albaum,et al. Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R. solani AG1-IA, AG1-IB, AG3 and AG8 Isolates , 2015, PloS one.
[6] K. Morris,et al. Permanent draft genome sequence of Frankia sp. strain ACN1ag, a nitrogen-fixing actinobacterium isolated from the root nodules of Alnus glutinosa , 2018 .
[7] A. Lapidus,et al. Genome Sequence of the Atypical Symbiotic Frankia R43 Strain, a Nitrogen-Fixing and Hydrogen-Producing Actinobacterium , 2015, Genome Announcements.
[8] E. Giraud,et al. Nod Factor-Independent Nodulation in Aeschynomene evenia Required the Common Plant-Microbe Symbiotic Toolkit1 , 2015, Plant Physiology.
[9] L. Tisa,et al. Cultivating the uncultured: growing the recalcitrant cluster-2 Frankia strains , 2015, Scientific Reports.
[10] N. Kyrpides,et al. Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina , 2015, Genome Announcements.
[11] M. Facciotti,et al. Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant , 2015, PloS one.
[12] P. Normand,et al. Bacterial‐induced calcium oscillations are common to nitrogen‐fixing associations of nodulating legumes and non‐legumes , 2015, The New phytologist.
[13] H. Curtidor,et al. Mce4F Mycobacterium tuberculosis protein peptides can inhibit invasion of human cell lines. , 2015, Pathogens and disease.
[14] H. Peter Linder,et al. Do Mediterranean‐type ecosystems have a common history?—Insights from the Buckthorn family (Rhamnaceae) , 2015, Evolution; international journal of organic evolution.
[15] S. Thirup,et al. An intermolecular binding mechanism involving multiple LysM domains mediates carbohydrate recognition by an endopeptidase , 2015, Acta crystallographica. Section D, Biological crystallography.
[16] A. Pühler,et al. Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MF(T.). , 2014, Journal of biotechnology.
[17] Philippe Normand,et al. Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders 'Frankiales' and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov. , 2014, International journal of systematic and evolutionary microbiology.
[18] C. Médigue,et al. Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style? , 2014, PloS one.
[19] K. Kucho,et al. Different dynamics of genome content shuffling among host-specificity groups of the symbiotic actinobacterium Frankia , 2014, BMC Genomics.
[20] Jens Kattge,et al. A single evolutionary innovation drives the deep evolution of symbiotic N2-fixation in angiosperms , 2014, Nature Communications.
[21] K. Morris,et al. Draft Genome Sequence of Frankia sp. Strain BMG5.23, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina glauca Grown in Tunisia , 2014, Genome Announcements.
[22] K. Morris,et al. Draft Genome Sequence of Frankia sp. Strain Thr, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina cunninghamiana Grown in Egypt , 2014, Genome Announcements.
[23] Jens Stoye,et al. ReadXplorer—visualization and analysis of mapped sequences , 2014, Bioinform..
[24] P. Normand,et al. Absence of Cospeciation between the Uncultured Frankia Microsymbionts and the Disjunct Actinorhizal Coriaria Species , 2014, BioMed research international.
[25] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[26] K. Morris,et al. Draft Genome Sequence of Frankia sp. Strain CcI6, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Casuarina cunninghamiana , 2014, Genome Announcements.
[27] A. Pühler,et al. Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp. Mb1 isolated from a production-scale biogas plant. , 2013, Journal of biotechnology.
[28] A. Pühler,et al. Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass ensiling. , 2013, Journal of biotechnology.
[29] A. Goesmann,et al. Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. , 2013, Journal of biotechnology.
[30] Natalia N. Ivanova,et al. Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils , 2013, Genome Announcements.
[31] Natalia N. Ivanova,et al. Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis , 2013, Genome Announcements.
[32] S. Svistoonoff,et al. The Independent Acquisition of Plant Root Nitrogen-Fixing Symbiosis in Fabids Recruited the Same Genetic Pathway for Nodule Organogenesis , 2013, PloS one.
[33] Kai Blin,et al. antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers , 2013, Nucleic Acids Res..
[34] N. Kyrpides,et al. Draft Genome Sequence of Frankia sp. Strain QA3, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Alnus nitida , 2013, Genome Announcements.
[35] G. Oldroyd. Speak, friend, and enter: signalling systems that promote beneficial symbiotic associations in plants , 2013, Nature Reviews Microbiology.
[36] Natalia N. Ivanova,et al. Draft Genome Sequence of Frankia sp. Strain CN3, an Atypical, Noninfective (Nod–) Ineffective (Fix–) Isolate from Coriaria nepalensis , 2013, Genome Announcements.
[37] J. Willemse,et al. Mammalian cell entry genes in Streptomyces may provide clues to the evolution of bacterial virulence , 2013, Scientific Reports.
[38] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[39] C. Yesson,et al. Past Climate Change and Plant Evolution in Western North America: A Case Study in Rosaceae , 2012, PloS one.
[40] A. Goesmann,et al. Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. , 2012, Journal of biotechnology.
[41] J. Stoye,et al. The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110 , 2012, BMC Genomics.
[42] Natalia N. Ivanova,et al. Genome Sequence of “Candidatus Frankia datiscae” Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata , 2011, Journal of bacteriology.
[43] Natalia N. Ivanova,et al. Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1 , 2011, Standards in genomic sciences.
[44] J. Setubal,et al. Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. , 2011, Journal of biotechnology.
[45] Alexander Goesmann,et al. High-quality genome sequence of Pichia pastoris CBS7435. , 2011, Journal of biotechnology.
[46] Kai Blin,et al. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences , 2011, Nucleic Acids Res..
[47] Ramón Doallo,et al. ProtTest 3: fast selection of best-fit models of protein evolution , 2011, Bioinform..
[48] R. Wing,et al. LysM-Type Mycorrhizal Receptor Recruited for Rhizobium Symbiosis in Nonlegume Parasponia , 2011, Science.
[49] S. Renner,et al. Phylogenetic relationships in the order Cucurbitales and a new classification of the gourd family (Cucurbitaceae) , 2011 .
[50] Jean Dénarié,et al. Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza , 2011, Nature.
[51] Ramón Doallo,et al. ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution , 2010, Euro-Par Workshops.
[52] N. Perna,et al. progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement , 2010, PloS one.
[53] O. Gascuel,et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. , 2010, Systematic biology.
[54] Jens Stoye,et al. BIOINFORMATICS APPLICATIONS NOTE , 2009 .
[55] J. Wen,et al. Evolution of the Madrean–Tethyan disjunctions and the North and South American amphitropical disjunctions in plants , 2009 .
[56] Alla Lapidus,et al. Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations. , 2009, Genome research.
[57] Alexander Goesmann,et al. EDGAR: A software framework for the comparative analysis of prokaryotic genomes , 2009, BMC Bioinformatics.
[58] T. Silhavy,et al. An ABC transport system that maintains lipid asymmetry in the Gram-negative outer membrane , 2009, Proceedings of the National Academy of Sciences.
[59] L. Dijkhuizen,et al. The Actinobacterial mce4 Locus Encodes a Steroid Transporter* , 2008, Journal of Biological Chemistry.
[60] Martin Parniske,et al. Arbuscular mycorrhiza: the mother of plant root endosymbioses , 2008, Nature Reviews Microbiology.
[61] Laurent Laplaze,et al. SymRK defines a common genetic basis for plant root endosymbioses with arbuscular mycorrhiza fungi, rhizobia, and Frankiabacteria , 2008, Proceedings of the National Academy of Sciences.
[62] Katharina Markmann,et al. Functional Adaptation of a Plant Receptor- Kinase Paved the Way for the Evolution of Intracellular Root Symbioses with Bacteria , 2008, PLoS biology.
[63] Jack A. M. Leunissen,et al. Turning CFCs into salt. , 1996, Nucleic Acids Res..
[64] Alexander F. Auch,et al. MEGAN analysis of metagenomic data. , 2007, Genome research.
[65] Eugene Goltsman,et al. Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. , 2006, Genome research.
[66] K. Konstantinidis,et al. Genomic insights that advance the species definition for prokaryotes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[67] D. Potter,et al. Low genetic diversity among Frankia spp. strains nodulating sympatric populations of actinorhizal species of Rosaceae, Ceanothus (Rhamnaceae) and Datisca glomerata (Datiscaceae) west of the Sierra Nevada (California). , 2004, Canadian journal of microbiology.
[68] M. P. Cummings. PHYLIP (Phylogeny Inference Package) , 2004 .
[69] M. Hattori,et al. The complete genomic sequence of Nocardia farcinica IFM 10152. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[70] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[71] F. Blattner,et al. Mauve: multiple alignment of conserved genomic sequence with rearrangements. , 2004, Genome research.
[72] M. Clawson,et al. Assessing the phylogeny of Frankia-actinorhizal plant nitrogen-fixing root nodule symbioses with Frankia 16S rRNA and glutamine synthetase gene sequences. , 2004, Molecular phylogenetics and evolution.
[73] R. Giegerich,et al. GenDB--an open source genome annotation system for prokaryote genomes. , 2003, Nucleic acids research.
[74] F. Debellé,et al. Structural and functional comparison of Frankia root hair deforming factor and rhizobia Nod factor , 1999 .
[75] M. Clawson,et al. Natural Diversity of Frankia Strains in Actinorhizal Root Nodules from Promiscuous Hosts in the Family Myricaceae , 1999, Applied and Environmental Microbiology.
[76] S. Ensign,et al. Evidence for an Inducible Nucleotide-Dependent Acetone Carboxylase in Rhodococcus rhodochrousB276 , 1999, Journal of bacteriology.
[77] W. Silvester,et al. Typical Frankia infect actinorhizal plants exotic to New Zealand , 1997 .
[78] P. Normand,et al. Direct characterization of Frankia and of close phyletic neighbors from an Alnus viridis rhizosphere , 1997 .
[79] S. Swensen. THE EVOLUTION OF ACTINORHIZAL SYMBIOSES: EVIDENCE FOR MULTIPLE ORIGINS OF THE SYMBIOTIC ASSOCIATION , 1996 .
[80] W. Silvester,et al. Amplification of 16S rRNA genes from Frankia strains in root nodules of Ceanothus griseus, Coriaria arborea, Coriaria plumosa, Discaria toumatou, and Purshia tridentata , 1996, Applied and environmental microbiology.
[81] D. Soltis,et al. Chloroplast gene sequence data suggest a single origin of the predisposition for symbiotic nitrogen fixation in angiosperms. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[82] R. Mellor,et al. Structural modifications in Rhizobium meliloti Nod factors influence their stability against hydrolysis by root chitinases , 1994 .
[83] K. Huss-Danell,et al. Response of nitrogenase to altered carbon supply in a Frankia‐Alnus incana symbiosis , 1991 .
[84] P. Grimont,et al. Deoxyribonucleic Acid Relatedness among Members of the Genus Frankia , 1989 .
[85] C. Rodríguez-Barrueco,et al. The effect of pH on nodulation and growth ofCoriaria myrtifolia L. , 1978, Plant and Soil.
[86] Harold A. Mooney,et al. Mediterranean type ecosystems. Origin and structure , 1975, Pedobiologia.
[87] BOTANiCAL Gazette,et al. Handbook of Soil Science , 1933, Botanical Gazette.
[88] L. Tisa,et al. Chitinase-resistant hydrophilic symbiotic factors secreted by Frankia activate both Ca(2+) spiking and NIN gene expression in the actinorhizal plant Casuarina glauca. , 2016, The New phytologist.
[89] P. Vandamme,et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. , 2007, International journal of systematic and evolutionary microbiology.
[90] Derrick J. Zwickl. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion , 2006 .
[91] M. Hasebe,et al. Molecular phylogeny of Coriaria, with special emphasis on the disjunct distribution. , 2000, Molecular phylogenetics and evolution.
[92] A. Liston. Biogeographic relationships between the mediterranean and north american floras: insights from molecular data , 1997 .
[93] P. Normand,et al. Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae. , 1996, International journal of systematic bacteriology.
[94] Rainer Horn,et al. Handbook of soil science. , 1996 .
[95] L. Rieseberg,et al. Morphological Stasis abd Molecular Divergence in the Intercontinental Disjunct Genus Datisca (Datiscaceae) , 1989 .
[96] M. McGlone,et al. The effect of recent volcanic events and climatic changes on the vegetation of Mt Egmont (Mt Taranaki), New Zealand , 1988 .
[97] E. Pahlich,et al. A rapid DNA isolation procedure for small quantities of fresh leaf tissue , 1980 .
[98] D. I. Axelrod. Evolution and Biogeography of Madrean-Tethyan Sclerophyll Vegetation , 1975 .
[99] D. I. Axelrod. History of the Mediterranean Ecosystem in California , 1973 .
[100] Gapped BLAST and PSI-BLAST: A new , 1997 .