Nuquantus: Machine learning software for the characterization and quantification of cell nuclei in complex immunofluorescent tissue images
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Christos Davatzikos | Nicolas Honnorat | Erdem Varol | Markus Wallner | Polina Gross | Danielle M Trappanese | Thomas E Sharp | Timothy Starosta | Jason M Duran | Sarah Koller | Steven R Houser | S. Houser | C. Davatzikos | E. Varol | N. Honnorat | J. Duran | M. Wallner | Timothy Starosta | Thomas E. Sharp | Danielle M. Trappanese | Polina Gross | Sarah Koller
[1] Bernd Bodenmiller,et al. Automatic single cell segmentation on highly multiplexed tissue images , 2015, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[2] Daniele Torella,et al. Adult c-kit(pos) cardiac stem cells fulfill Koch's postulates as causal agents for cardiac regeneration. , 2014, Circulation research.
[3] Patrick Bouthemy,et al. Patch-Based Nonlocal Functional for Denoising Fluorescence Microscopy Image Sequences , 2010, IEEE Transactions on Medical Imaging.
[4] Ciro Indolfi,et al. Adult c-kitpos Cardiac Stem Cells Are Necessary and Sufficient for Functional Cardiac Regeneration and Repair , 2013, Cell.
[5] Clive Standley,et al. Advances in microscopy techniques. , 2011, Archives of pathology & laboratory medicine.
[6] Chris Bakal,et al. Visualizing cellular imaging data using PhenoPlot , 2015, Nature Communications.
[7] Yibin Wang,et al. p38 MAP kinase inhibition enables proliferation of adult mammalian cardiomyocytes. , 2005, Genes & development.
[8] Steven R Houser,et al. Are resident c-Kit+ cardiac stem cells really all that are needed to mend a broken heart? , 2013, Circulation research.
[9] Chung-Ming Chen,et al. Computer-Aided Detection and Diagnosis in Medical Imaging , 2013, Comput. Math. Methods Medicine.
[10] Anthony B. Firulli,et al. Recombinant Neuregulin 1 Does Not Activate Cardiomyocyte DNA Synthesis in Normal or Infarcted Adult Mice , 2014, PloS one.
[11] Yvette I. Sheline,et al. Evaluation of 5-ethynyl-2′-deoxyuridine staining as a sensitive and reliable method for studying cell proliferation in the adult nervous system , 2010, Brain Research.
[12] Polina Golland,et al. Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning , 2009, Proceedings of the National Academy of Sciences.
[13] N. Kostomitsopoulos,et al. A comparative anatomic and physiologic overview of the porcine heart. , 2014, Journal of the American Association for Laboratory Animal Science : JAALAS.
[14] Chih-Jen Lin,et al. LIBLINEAR: A Library for Large Linear Classification , 2008, J. Mach. Learn. Res..
[15] Mathews Jacob,et al. Design of steerable filters for feature detection using canny-like criteria , 2004, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[16] Tony Lindeberg,et al. Edge Detection and Ridge Detection with Automatic Scale Selection , 1996, Proceedings CVPR IEEE Computer Society Conference on Computer Vision and Pattern Recognition.
[17] J. Fleiss. Measuring nominal scale agreement among many raters. , 1971 .
[18] J. Terrovitis,et al. Cardiomyocyte proliferation vs progenitor cells in myocardial regeneration: The debate continues , 2013, Global cardiology science & practice.
[19] S. Houser,et al. A Characterization and Targeting of the Infarct Border Zone in a Swine Model of Myocardial Infarction , 2012, Clinical and translational science.
[20] P. Doevendans,et al. Cardiovascular phenotyping in mice. , 1998, Cardiovascular research.
[21] Don R. Hush,et al. Interactive Machine Learning in Data Exploitation , 2013, Computing in Science & Engineering.
[22] Deborah Vela,et al. Cardiomyocyte death and renewal in the normal and diseased heart. , 2008, Cardiovascular pathology : the official journal of the Society for Cardiovascular Pathology.
[23] D. Gudbjartsson,et al. Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma , 2015, Nature Communications.
[24] Kun Liu,et al. Rotation-Invariant HOG Descriptors Using Fourier Analysis in Polar and Spherical Coordinates , 2014, International Journal of Computer Vision.
[25] Thomas E Sharp,et al. Bone-Derived Stem Cells Repair the Heart After Myocardial Infarction Through Transdifferentiation and Paracrine Signaling Mechanisms , 2013, Circulation research.
[26] Gang Zhang,et al. Quantitative assessment on the cloning efficiencies of lentiviral transfer vectors with a unique clone site , 2012, Scientific Reports.
[27] Timoteo Carletti,et al. The Stochastic Evolution of a Protocell: The Gillespie Algorithm in a Dynamically Varying Volume , 2011, Comput. Math. Methods Medicine.
[28] R. Malladi,et al. Segmentation of nuclei and cells using membrane related protein markers , 2001, Journal of microscopy.
[29] M.,et al. Statistical and Structural Approaches to Texture , 2022 .
[30] C Wählby,et al. Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections , 2004, Journal of microscopy.
[31] Ichiro Manabe,et al. Cellular Interplay between Cardiomyocytes and Nonmyocytes in Cardiac Remodeling , 2011, International journal of inflammation.
[32] N. Frangogiannis,et al. Fibroblasts in myocardial infarction: a role in inflammation and repair. , 2014, Journal of molecular and cellular cardiology.
[33] B. S. Manjunath,et al. Biological imaging software tools , 2012, Nature Methods.
[34] SametHanan,et al. Efficient Component Labeling of Images of Arbitrary Dimension Represented by Linear Bintrees , 1988 .
[35] H. Irshad,et al. Methods for Nuclei Detection, Segmentation, and Classification in Digital Histopathology: A Review—Current Status and Future Potential , 2014, IEEE Reviews in Biomedical Engineering.
[36] William M. Wells,et al. Validation of image segmentation by estimating rater bias and variance , 2008, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[37] Daniel Heim,et al. Detection and Segmentation of Cell Nuclei in Virtual Microscopy Images: A Minimum-Model Approach , 2012, Scientific Reports.
[38] Jianwei Zhang,et al. Recent Advances in Morphological Cell Image Analysis , 2012, Comput. Math. Methods Medicine.
[39] Fabian Rudolf,et al. Accurate cell segmentation in microscopy images using membrane patterns , 2014, Bioinform..
[40] Pauli Rämö,et al. CellClassifier: supervised learning of cellular phenotypes , 2009, Bioinform..
[41] Scott T. Clarke,et al. Detection of S-phase cell cycle progression using 5-ethynyl-2'-deoxyuridine incorporation with click chemistry, an alternative to using 5-bromo-2'-deoxyuridine antibodies. , 2008, BioTechniques.
[42] S. Hodge,et al. Zinc and Zinc Transporters in Macrophages and Their Roles in Efferocytosis in COPD , 2014, PloS one.
[43] Hanan Samet,et al. Efficient Component Labeling of Images of Arbitrary Dimension Represented by Linear Bintrees , 1988, IEEE Trans. Pattern Anal. Mach. Intell..
[44] Jon C. Aster,et al. Robbins BASIC PATHOLOGY , 2002, Robbins Basic Pathology.
[45] Henry K. Wong,et al. Apoptosis in Tissue Injury , 2006 .
[46] J. Fleiss,et al. Statistical methods for rates and proportions , 1973 .
[47] Kayvan Najarian,et al. An Entropy-Based Automated Cell Nuclei Segmentation and Quantification: Application in Analysis of Wound Healing Process , 2013, Comput. Math. Methods Medicine.
[48] Qing Nie,et al. Mouse cardiac surgery: comprehensive techniques for the generation of mouse models of human diseases and their application for genomic studies. , 2004, Physiological genomics.
[49] I. Tikkanen,et al. Cardiomyocyte apoptosis and ventricular remodeling after myocardial infarction in rats. , 2001, American journal of physiology. Heart and circulatory physiology.
[50] M. Kubát. An Introduction to Machine Learning , 2017, Springer International Publishing.
[51] Matthew McAuliffe,et al. Whole cell segmentation in solid tissue sections , 2005, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[52] D. Loo,et al. In situ detection of apoptosis by the TUNEL assay: an overview of techniques. , 2011, Methods in molecular biology.
[53] Erik H. W. Meijering,et al. Cell Segmentation: 50 Years Down the Road [Life Sciences] , 2012, IEEE Signal Processing Magazine.
[54] Richard T. Lee,et al. Cardiac regeneration based on mechanisms of cardiomyocyte proliferation and differentiation. , 2014, Stem cell research.
[55] Luc Florack,et al. An Efficient Method for Tensor Voting Using Steerable Filters , 2006, ECCV.
[56] Lesley Oakley,et al. The Debate Continues … , 1985, Children Australia.
[57] Jibin Zhou,et al. Cardiomyocyte-specific deletion of Gsk3α mitigates post-myocardial infarction remodeling, contractile dysfunction, and heart failure. , 2014, Journal of the American College of Cardiology.