Transposable Element Domestication As an Adaptation to Evolutionary Conflicts.
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[1] D. Schatz,et al. New insights into the evolutionary origins of the recombination‐activating gene proteins and V(D)J recombination , 2017, The FEBS journal.
[2] J. Doudna,et al. CRISPR-Cas9 Structures and Mechanisms. , 2017, Annual review of biophysics.
[3] D. Weigel,et al. Arabidopsis proteins with a transposon-related domain act in gene silencing , 2017, Nature Communications.
[4] F. Guérin,et al. Flow cytometry sorting of nuclei enables the first global characterization of Paramecium germline DNA and transposable elements , 2017, BMC Genomics.
[5] P. Bieniasz,et al. Co-option of an endogenous retrovirus envelope for host defense in hominid ancestors , 2017, eLife.
[6] Kira S. Makarova,et al. Diversity and evolution of class 2 CRISPR–Cas systems , 2017, Nature Reviews Microbiology.
[7] C. Feschotte,et al. Regulatory activities of transposable elements: from conflicts to benefits , 2016, Nature Reviews Genetics.
[8] M. Bétermier,et al. Multimerization properties of PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements , 2017, Nucleic acids research.
[9] R. McLaughlin,et al. Genetic conflicts: the usual suspects and beyond , 2017, Journal of Experimental Biology.
[10] Y. C. G. Lee,et al. Recurrent Innovation at Genes Required for Telomere Integrity in Drosophila , 2016, Molecular biology and evolution.
[11] M. Yao,et al. The piggyBac transposon-derived genes TPB1 and TPB6 mediate essential transposon-like excision during the developmental rearrangement of key genes in Tetrahymena thermophila , 2016, Genes & development.
[12] Vivek Krishnakumar,et al. Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome , 2016, eLife.
[13] E. Koonin,et al. Casposon integration shows strong target site preference and recapitulates protospacer integration by CRISPR-Cas systems , 2016, Nucleic acids research.
[14] D. Haig. Transposable elements: Self‐seekers of the germline, team‐players of the soma , 2016, BioEssays : news and reviews in molecular, cellular and developmental biology.
[15] D. Schatz,et al. Discovery of an Active RAG Transposon Illuminates the Origins of V(D)J Recombination , 2016, Cell.
[16] H. Cam,et al. Restriction of Retrotransposon Mobilization in Schizosaccharomyces pombe by Transcriptional Silencing and Higher-Order Chromatin Organization , 2016, Genetics.
[17] H. Kazazian,et al. Roles for retrotransposon insertions in human disease , 2016, Mobile DNA.
[18] M. Blanchette,et al. Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements , 2016, Molecular biology and evolution.
[19] G. Mohr,et al. Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase–Cas1 fusion protein , 2016, Science.
[20] L. Maquat,et al. Retrotransposons as regulators of gene expression , 2016, Science.
[21] Phylogenomic analysis reveals genome-wide purifying selection on TBE transposons in the ciliate Oxytricha , 2016, Mobile DNA.
[22] Wei Chen,et al. Genome-wide Profiling Reveals Remarkable Parallels Between Insertion Site Selection Properties of the MLV Retrovirus and the piggyBac Transposon in Primary Human CD4+ T Cells , 2016, Molecular therapy : the journal of the American Society of Gene Therapy.
[23] P. Deininger,et al. Insertion of Retrotransposons at Chromosome Ends: Adaptive Response to Chromosome Maintenance , 2016, Front. Genet..
[24] Erik Kaestner,et al. The Origins Of Genome Architecture , 2016 .
[25] E. Koonin,et al. ISC, a Novel Group of Bacterial and Archaeal DNA Transposons That Encode Cas9 Homologs , 2015, Journal of bacteriology.
[26] G. V. James,et al. Kicking against the PRCs – A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2 , 2015, PLoS Genetics.
[27] F. Dyda,et al. The casposon-encoded Cas1 protein from Aciduliprofundum boonei is a DNA integrase that generates target site duplications , 2015, Nucleic acids research.
[28] D. Haig. Going retro: Transposable elements, embryonic stem cells, and the mammalian placenta (retrospective on DOI 10.1002/bies.201300059) , 2015, BioEssays : news and reviews in molecular, cellular and developmental biology.
[29] Sita J. Saunders,et al. An updated evolutionary classification of CRISPR–Cas systems , 2015, Nature Reviews Microbiology.
[30] H. Cam,et al. Suppression of Meiotic Recombination by CENP-B Homologs in Schizosaccharomyces pombe , 2015, Genetics.
[31] D. Schroeder,et al. Early Developmental and Evolutionary Origins of Gene Body DNA Methylation Patterns in Mammalian Placentas , 2015, PLoS genetics.
[32] R. Mueller,et al. DNA transposons have colonized the genome of the giant virus Pandoravirus salinus , 2015, BMC Biology.
[33] Eugene V Koonin,et al. Evolution of the RAG1-RAG2 locus: both proteins came from the same transposon , 2015, Biology Direct.
[34] E. Koonin,et al. Evolution of adaptive immunity from transposable elements combined with innate immune systems , 2014, Nature Reviews Genetics.
[35] C. Feschotte,et al. Fighting Fire with Fire: Endogenous Retrovirus Envelopes as Restriction Factors , 2015, Journal of Virology.
[36] Cédric Feschotte,et al. Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy , 2015, Cell reports.
[37] Jennifer A. Doudna,et al. Integrase-mediated spacer acquisition during CRISPR–Cas adaptive immunity , 2015, Nature.
[38] Gérard Pierron,et al. Retroviral envelope gene captures and syncytin exaptation for placentation in marsupials , 2015, Proceedings of the National Academy of Sciences.
[39] M. Belfort,et al. Mobile Bacterial Group II Introns at the Crux of Eukaryotic Evolution , 2015, Microbiology spectrum.
[40] C. Kozak. Origins of the Endogenous and Infectious Laboratory Mouse Gammaretroviruses , 2014, Viruses.
[41] C. Feschotte,et al. Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications. , 2014, Trends in genetics : TIG.
[42] Athanasia C. Tzika,et al. Retroviral envelope syncytin capture in an ancestrally diverged mammalian clade for placentation in the primitive Afrotherian tenrecs , 2014, Proceedings of the National Academy of Sciences.
[43] Janet M. Young,et al. Positive Selection and Multiple Losses of the LINE-1-Derived L1TD1 Gene in Mammals Suggest a Dual Role in Genome Defense and Pluripotency , 2014, PLoS genetics.
[44] Laura F. Landweber,et al. The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development , 2014, Cell.
[45] L. Carbone,et al. Inference of Transposable Element Ancestry , 2014, PLoS genetics.
[46] Josefa González,et al. Pogo-like Transposases Have Been Repeatedly Domesticated into CENP-B-Related Proteins , 2014, Genome biology and evolution.
[47] E. Koonin,et al. Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity , 2014, BMC Biology.
[48] M. Yap,et al. Evolution of the Retroviral Restriction Gene Fv1: Inhibition of Non-MLV Retroviruses , 2014, PLoS pathogens.
[49] Alexander Vogt,et al. A Domesticated PiggyBac Transposase Interacts with Heterochromatin and Catalyzes Reproducible DNA Elimination in Tetrahymena , 2013, PLoS genetics.
[50] E. Chuong. Retroviruses facilitate the rapid evolution of the mammalian placenta , 2013, BioEssays : news and reviews in molecular, cellular and developmental biology.
[51] T. Heidmann,et al. Paleovirology of ‘syncytins’, retroviral env genes exapted for a role in placentation , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[52] D. Chalker,et al. LIA5 Is Required for Nuclear Reorganization and Programmed DNA Rearrangements Occurring during Tetrahymena Macronuclear Differentiation , 2013, PloS one.
[53] Jumpei Ito,et al. Refrex-1, a Soluble Restriction Factor against Feline Endogenous and Exogenous Retroviruses , 2013, Journal of Virology.
[54] L. Landweber,et al. Transposon Domestication versus Mutualism in Ciliate Genome Rearrangements , 2013, PLoS genetics.
[55] J. Sugimoto,et al. A novel human endogenous retroviral protein inhibits cell-cell fusion , 2013, Scientific Reports.
[56] T. Heidmann,et al. Differential Evolutionary Fate of an Ancestral Primate Endogenous Retrovirus Envelope Gene, the EnvV Syncytin, Captured for a Function in Placentation , 2013, PLoS genetics.
[57] J. Baker,et al. Endogenous retroviruses function as species-specific enhancer elements in the placenta , 2013, Nature Genetics.
[58] D. Mager,et al. Transposable elements: an abundant and natural source of regulatory sequences for host genes. , 2012, Annual review of genetics.
[59] Benjamin E. Lauderdale,et al. The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences , 2012, PLoS genetics.
[60] Douglas R. Hoen,et al. A Gene Family Derived from Transposable Elements during Early Angiosperm Evolution Has Reproductive Fitness Benefits in Arabidopsis thaliana , 2012, PLoS genetics.
[61] Casey M. Bergman,et al. Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae , 2012, PloS one.
[62] Kevin C. Roach,et al. Rapid evolution of centromeres and centromeric/kinetochore proteins , 2012 .
[63] M. Batzer,et al. Repetitive Elements May Comprise Over Two-Thirds of the Human Genome , 2011, PLoS genetics.
[64] Nikhil A. Joshi,et al. Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila , 2011, G3: Genes | Genomes | Genetics.
[65] T. Heidmann,et al. A pair of co-opted retroviral envelope syncytin genes is required for formation of the two-layered murine placental syncytiotrophoblast , 2011, Proceedings of the National Academy of Sciences.
[66] N. Negre,et al. Characterization of a CENP-B homolog in the holocentric Lepidoptera Spodoptera frugiperda. , 2011, Gene.
[67] J. V. Moran,et al. Dynamic interactions between transposable elements and their hosts , 2011, Nature Reviews Genetics.
[68] M. Pardue,et al. Retrotransposons that maintain chromosome ends , 2011, Proceedings of the National Academy of Sciences.
[69] M. Pardue,et al. Adapting to life at the end of the line , 2011, Mobile genetic elements.
[70] A. Mushegian,et al. Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase. , 2011, RNA.
[71] H. Hoekstra,et al. Maternal-fetal conflict: rapidly evolving proteins in the rodent placenta. , 2010, Molecular biology and evolution.
[72] M. Yao,et al. A Domesticated piggyBac Transposase Plays Key Roles in Heterochromatin Dynamics and DNA Cleavage during Programmed DNA Deletion in Tetrahymena thermophila , 2010, Molecular biology of the cell.
[73] R. Barrangou,et al. CRISPR/Cas, the Immune System of Bacteria and Archaea , 2010, Science.
[74] Guillaume Bourque,et al. Transposable elements in gene regulation and in the evolution of vertebrate genomes. , 2009, Current opinion in genetics & development.
[75] Aurélie Kapusta,et al. PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia. , 2009, Genes & development.
[76] P. Opolon,et al. Syncytin-A knockout mice demonstrate the critical role in placentation of a fusogenic, endogenous retrovirus-derived, envelope gene , 2009, Proceedings of the National Academy of Sciences.
[77] L. Landweber,et al. A Functional Role for Transposases in a Large Eukaryotic Genome , 2009, Science.
[78] J. R. van der Ploeg. Analysis of CRISPR in Streptococcus mutans suggests frequent occurrence of acquired immunity against infection by M102-like bacteriophages. , 2009, Microbiology.
[79] M. Belfort,et al. The take and give between retrotransposable elements and their hosts. , 2008, Annual review of genetics.
[80] C. Feschotte. Transposable elements and the evolution of regulatory networks , 2008, Nature Reviews Genetics.
[81] N. Craig,et al. piggyBac can bypass DNA synthesis during cut and paste transposition , 2008, The EMBO journal.
[82] D. Haig,et al. Placental growth hormone-related proteins and prolactin-related proteins. , 2008, Placenta.
[83] S. Grewal,et al. Host genome surveillance for retrotransposons by transposon-derived proteins , 2008, Nature.
[84] C. Casola,et al. Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals. , 2007, Molecular biology and evolution.
[85] H. Masumoto,et al. CENP-B Controls Centromere Formation Depending on the Chromatin Context , 2007, Cell.
[86] C. Feschotte,et al. DNA transposons and the evolution of eukaryotic genomes. , 2007, Annual review of genetics.
[87] J. Bennetzen,et al. A unified classification system for eukaryotic transposable elements , 2007, Nature Reviews Genetics.
[88] R. Barrangou,et al. CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes , 2007, Science.
[89] Eugene V. Koonin,et al. Introns and the origin of nucleus–cytosol compartmentalization , 2006, Nature.
[90] R. Trivers,et al. Genes in Conflict , 2006 .
[91] C. Kozak,et al. Rmcf2, a Xenotropic Provirus in the Asian Mouse Species Mus castaneus, Blocks Infection by Polytropic Mouse Gammaretroviruses , 2005, Journal of Virology.
[92] J. Jurka,et al. RAG1 Core and V(D)J Recombination Signal Sequences Were Derived from Transib Transposons , 2005, PLoS biology.
[93] Harmit S. Malik. Mimulus finds centromeres in the driver's seat. , 2005, Trends in ecology & evolution.
[94] T. Lange. T-loops and the origin of telomeres , 2004, Nature Reviews Molecular Cell Biology.
[95] D. Prescott,et al. DNA of ciliated protozoa , 1971, Chromosoma.
[96] John F. McDonald,et al. Molecular domestication of mobile elements , 2004, Genetica.
[97] Keith M. Derbyshire,et al. The outs and ins of transposition: from Mu to Kangaroo , 2003, Nature Reviews Molecular Cell Biology.
[98] T. Spencer,et al. Receptor Usage and Fetal Expression of Ovine Endogenous Betaretroviruses: Implications for Coevolution of Endogenous and Exogenous Retroviruses , 2003, Journal of Virology.
[99] H. Masumoto,et al. CENP-B box is required for de novo centromere chromatin assembly on human alphoid DNA , 2002, The Journal of cell biology.
[100] M. Gellert. V(D)J recombination: RAG proteins, repair factors, and regulation. , 2002, Annual review of biochemistry.
[101] S. Henikoff,et al. The Centromere Paradox: Stable Inheritance with Rapidly Evolving DNA , 2001, Science.
[102] M. Baum,et al. Fission Yeast Homologs of Human CENP-B Have Redundant Functions Affecting Cell Growth and Chromosome Segregation , 2000, Molecular and Cellular Biology.
[103] J. Seger,et al. Selection on the protein-coding genes of the TBE1 family of transposable elements in the ciliates Oxytricha fallax and O. trifallax. , 1997, Molecular biology and evolution.
[104] T R Hughes,et al. Reverse transcriptase motifs in the catalytic subunit of telomerase. , 1997, Science.
[105] Jonathan P. Stoye,et al. Positional cloning of the mouse retrovirus restriction gene Fvl , 1996, Nature.
[106] A. Smit,et al. Tiggers and DNA transposon fossils in the human genome. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[107] T. Moore,et al. Genomic imprinting in mammalian development: a parental tug-of-war. , 1991, Trends in genetics : TIG.
[108] D. Schatz,et al. RAG-1 and RAG-2, adjacent genes that synergistically activate V(D)J recombination. , 1990, Science.
[109] F. N. Cole. SECTION B--PHYSICS. I. , 1908, Science.