Genome-wide screening of vaccine targets prioritization and reverse vaccinology aided design of peptides vaccine to enforce humoral immune response against Campylobacter jejuni
暂无分享,去创建一个
Syed Shujait Ali | Dongqing Wei | Muhammad Suleman | Abul Kalam Azad | Abbas Khan | Adnan Zeb | Muhammad Safdar | Zeeshan Anwar | N. Nizam-Uddin | Dongqing Wei | A. Azad | Abbas Khan | Muhammad Safdar | M. Suleman | Zeeshan Anwar | Adnan Zeb | N. Nizam-Uddin
[1] Q. Ain,et al. Subtractive proteomics and immunoinformatics revealed novel B-cell derived T-cell epitopes against Yersinia enterocolitica: An etiological agent of Yersiniosis. , 2018, Microbial pathogenesis.
[2] Dong-Qing Wei,et al. An Integrated Systems Biology and Network-Based Approaches to Identify Novel Biomarkers in Breast Cancer Cell Lines Using Gene Expression Data , 2020, Interdisciplinary Sciences: Computational Life Sciences.
[3] Gul Sanober,et al. Identification of plausible drug targets by investigating the druggable genome of MDR Staphylococcus epidermidis , 2017 .
[4] Gajendra PS Raghava,et al. Designing of interferon-gamma inducing MHC class-II binders , 2013, Biology Direct.
[5] Amjad Ali,et al. Identification of putative vaccine candidates against Helicobacter pylori exploiting exoproteome and secretome: a reverse vaccinology based approach. , 2015, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[6] Sudipto Saha,et al. Prediction of continuous B‐cell epitopes in an antigen using recurrent neural network , 2006, Proteins.
[7] C. Chakraborty,et al. Development of epitope‐based peptide vaccine against novel coronavirus 2019 (SARS‐COV‐2): Immunoinformatics approach , 2020, Journal of medical virology.
[8] Gajendra P. S. Raghava,et al. A Web Resource for Designing Subunit Vaccine Against Major Pathogenic Species of Bacteria , 2018, Front. Immunol..
[9] G. Natoli,et al. Adaptation and memory in immune responses , 2019, Nature Immunology.
[10] Si Ming Man,et al. Global Epidemiology of Campylobacter Infection , 2015, Clinical Microbiology Reviews.
[11] K. Nyati,et al. Role of Campylobacter jejuni Infection in the Pathogenesis of Guillain-Barré Syndrome: An Update , 2013, BioMed research international.
[12] Dieter Jahn,et al. JCat: a novel tool to adapt codon usage of a target gene to its potential expression host , 2005, Nucleic Acids Res..
[13] Jian Yang,et al. VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on , 2015, Nucleic Acids Res..
[14] Teruyuki Nagamune,et al. Design of the linkers which effectively separate domains of a bifunctional fusion protein. , 2001, Protein engineering.
[15] Gajendra P. S. Raghava,et al. AlgPred: prediction of allergenic proteins and mapping of IgE epitopes , 2006, Nucleic Acids Res..
[16] Syed Shujait Ali,et al. Structural insights of catalytic mechanism in mutant pyrazinamidase of Mycobacterium tuberculosis , 2020, Journal of biomolecular structure & dynamics.
[17] Dongqing Wei,et al. Immunoinformatics approaches to explore Helicobacter Pylori proteome (Virulence Factors) to design B and T cell multi-epitope subunit vaccine , 2019, Scientific Reports.
[18] F. Bonilla,et al. Adaptive immunity. , 2010, The Journal of allergy and clinical immunology.
[19] Dongqing Wei,et al. Structural and free energy landscape of novel mutations in ribosomal protein S1 (rpsA) associated with pyrazinamide resistance , 2019, Scientific Reports.
[20] Jenn-Kang Hwang,et al. Prediction of protein subcellular localization , 2006, Proteins.
[21] Manfred J. Sippl,et al. Thirty years of environmental health research--and growing. , 1996, Nucleic Acids Res..
[22] K. Ranaghan,et al. Towards a peptide-based vaccine against Shigella sonnei: A subtractive reverse vaccinology based approach. , 2017, Biologicals : journal of the International Association of Biological Standardization.
[23] B. Wren,et al. Transmission of Multidrug Resistant Campylobacter jejuni to Children from Different Sources in Pakistan. , 2020, Journal of global antimicrobial resistance.
[24] Daniel R Roe,et al. PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data. , 2013, Journal of chemical theory and computation.
[25] Vandana Solanki,et al. Subtractive proteomics to identify novel drug targets and reverse vaccinology for the development of chimeric vaccine against Acinetobacter baumannii , 2018, Scientific Reports.
[26] E. Crushell,et al. Enteric Campylobacter: Purging Its Secrets? , 2004, Pediatric Research.
[27] Amjad Ali,et al. Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets , 2016, BMC Genomics.
[28] M. Hasan,et al. Subtractive genomics approach towards the identification of novel therapeutic targets against human Bartonella bacilliformis , 2020 .
[29] Morten Nielsen,et al. NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction , 2009, BMC Bioinformatics.
[30] W. Snelling,et al. Campylobacter jejuni , 2005, Letters in applied microbiology.
[31] V. DiRita,et al. Campylobacter jejuni: molecular biology and pathogenesis , 2007, Nature Reviews Microbiology.
[32] S. Cawthraw,et al. Antibodies, directed towards Campylobacter jejuni antigens, in sera from poultry abattoir workers , 2000, Clinical and experimental immunology.
[33] Syed Shujait Ali,et al. Immunoinformatics and structural vaccinology driven prediction of multi-epitope vaccine against Mayaro virus and validation through in-silico expression. , 2019, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[34] Hong-Yu Ou,et al. EG: a database of essential genes , 2004, Nucleic Acids Res..
[35] Irini A. Doytchinova,et al. BMC Bioinformatics BioMed Central Methodology article VaxiJen: a server for prediction of protective antigens, tumour , 2007 .
[36] Dima Kozakov,et al. How good is automated protein docking? , 2013, Proteins.
[37] BassalRavit,et al. Trends in the Epidemiology of Campylobacteriosis in Israel (1999-2012). , 2016 .
[38] R. Rappuoli,et al. Reverse vaccinology, a genome-based approach to vaccine development. , 2001 .
[39] Syed Shujait Ali,et al. Dynamics Insights Into the Gain of Flexibility by Helix-12 in ESR1 as a Mechanism of Resistance to Drugs in Breast Cancer Cell Lines , 2020, Frontiers in Molecular Biosciences.
[40] V. Prajapati,et al. Exploring Leishmania secretory proteins to design B and T cell multi-epitope subunit vaccine using immunoinformatics approach , 2017, Scientific Reports.
[41] Debmalya Barh,et al. Exoproteome and Secretome Derived Broad Spectrum Novel Drug and Vaccine Candidates in Vibrio cholerae Targeted by Piper betel Derived Compounds , 2013, PloS one.
[42] Liam J. McGuffin,et al. The PSIPRED protein structure prediction server , 2000, Bioinform..
[43] O. Sahin,et al. Antibiotic resistance of Campylobacter jejuni isolates recovered from humans with diarrhoea in Turkey , 2019, Journal of medical microbiology.
[44] B. Wren,et al. Microbe Profile: Campylobacter jejuni - survival instincts. , 2020, Microbiology.
[45] Morten Nielsen,et al. Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction , 2007, BMC Bioinformatics.
[46] Sobia Idrees,et al. Structural analysis and epitope prediction of HCV E1 protein isolated in Pakistan: an in-silico approach , 2013, Virology Journal.
[47] N. Shams,et al. Computational Design of Different Epitope-Based Vaccines Against Salmonella typhi , 2019, International Journal of Peptide Research and Therapeutics.
[48] T. Yeates,et al. Verification of protein structures: Patterns of nonbonded atomic interactions , 1993, Protein science : a publication of the Protein Society.
[49] S. Chander,et al. Molecular Docking and Molecular Dynamics Simulation Based Approach to Explore the Dual Inhibitor Against HIV-1 Reverse Transcriptase and Integrase. , 2017, Combinatorial chemistry & high throughput screening.
[50] Dima Kozakov,et al. The ClusPro web server for protein–protein docking , 2017, Nature Protocols.
[51] C. Szymanski,et al. The structures of the lipooligosaccharide and capsule polysaccharide of Campylobacter jejuni genome sequenced strain NCTC 11168. , 2002, European journal of biochemistry.
[52] V. Prajapati,et al. Novel Immunoinformatics Approaches to Design Multi-epitope Subunit Vaccine for Malaria by Investigating Anopheles Salivary Protein , 2018, Scientific Reports.
[53] David Baker,et al. Protein structure prediction and analysis using the Robetta server , 2004, Nucleic Acids Res..