Integrating multi-omic features exploiting Chromosome Conformation Capture data
暂无分享,去创建一个
[1] William Stafford Noble,et al. Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts , 2014, Genome research.
[2] Nicole Rusk. Genomics: Genomes in 3D improve one-dimensional assemblies , 2013, Nature Methods.
[3] A. Kenter,et al. Genomic Architecture may Influence Recurrent Chromosomal Translocation Frequency in the Igh Locus , 2013, Front. Immunol..
[4] Boris Lenhard,et al. Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments , 2013, Genome research.
[5] Job Dekker,et al. Organization of the Mitotic Chromosome , 2013, Science.
[6] Pietro Liò,et al. NuChart: An R Package to Study Gene Spatial Neighbourhoods with Multi-Omics Annotations , 2013, PloS one.
[7] Pietro Liò,et al. CytoHiC: a cytoscape plugin for visual comparison of Hi-C networks , 2013, Bioinform..
[8] Renzhi Cao,et al. The Properties of Genome Conformation and Spatial Gene Interaction and Regulation Networks of Normal and Malignant Human Cell Types , 2013, PloS one.
[9] Diego di Bernardo,et al. Colocalization of Coregulated Genes: A Steered Molecular Dynamics Study of Human Chromosome 19 , 2013, PLoS Comput. Biol..
[10] Huidong Shi,et al. Aberrant epigenetic gene regulation in lymphoid malignancies. , 2013, Seminars in hematology.
[11] Mikhail Shugay,et al. Genomic Hallmarks of Genes Involved in Chromosomal Translocations in Hematological Cancer , 2012, PLoS Comput. Biol..
[12] Ming Hu,et al. HiCNorm: removing biases in Hi-C data via Poisson regression , 2012, Bioinform..
[13] Joshua D. Larkin,et al. TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed , 2012, The EMBO journal.
[14] William Stafford Noble,et al. A genome-wide 3C-method for characterizing the three-dimensional architectures of genomes. , 2012, Methods.
[15] Emmanuel Barillot,et al. HiTC - Exploration of High Throughput ’C’ experiments , 2013 .
[16] Jesse M. Engreitz,et al. Three-Dimensional Genome Architecture Influences Partner Selection for Chromosomal Translocations in Human Disease , 2012, PloS one.
[17] Vivek Chandra,et al. Global changes in nuclear positioning of genes and intra- and inter-domain genomic interactions that orchestrate B cell fate , 2012, Nature immunology.
[18] Jesse R. Dixon,et al. Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions , 2012, Nature.
[19] Michael S. Becker,et al. Spatial Organization of the Mouse Genome and Its Role in Recurrent Chromosomal Translocations , 2012, Cell.
[20] K. Zhao,et al. Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization , 2012, Cell Research.
[21] Raymond K. Auerbach,et al. Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation , 2012, Cell.
[22] W. D. Laat,et al. A Decade of 3c Technologies: Insights into Nuclear Organization References , 2022 .
[23] Ian X. Y. Leung,et al. Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide , 2010, Molecular systems biology.
[24] C. Glass,et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.
[25] G. Bernardi,et al. Distribution of DNA methylation, CpGs, and CpG islands in human isochores. , 2010, Genomics.
[26] I. Amit,et al. Comprehensive mapping of long range interactions reveals folding principles of the human genome , 2011 .
[27] E. Liu,et al. An Oestrogen Receptor α-bound Human Chromatin Interactome , 2009, Nature.
[28] Mark S Handcock,et al. networksis: A Package to Simulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Sampling. , 2008, Journal of statistical software.
[29] Fangcheng Tang,et al. Network Structure and Knowledge Transfer , 2007, International Conference on Computational Science.
[30] Tom Misteli,et al. Spatial genome organization in the formation of chromosomal translocations. , 2007, Seminars in cancer biology.
[31] Fraser McBlane,et al. Recombinase, chromosomal translocations and lymphoid neoplasia: targeting mistakes and repair failures. , 2006, DNA repair.
[32] Laurie Gordon,et al. A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors. , 2006, Genome research.
[33] M. D. Den Boer,et al. Expression Levels of TEL, AML1, and the Fusion Products TEL-AML1 and AML1-TEL versus Drug Sensitivity and Clinical Outcome in t(12;21)-Positive Pediatric Acute Lymphoblastic Leukemia , 2005, Clinical Cancer Research.
[34] T. Misteli,et al. Spatial genome organization. , 2004, Experimental cell research.
[35] Ray Reagans,et al. Network Structure and Knowledge Transfer: The Effects of Cohesion and Range , 2003 .
[36] G. Dewald,et al. Cytogenetic and FISH studies in myelodysplasia, acute myeloid leukemia, chronic lymphocytic leukemia and lymphoma. , 2002, International journal of hematology.
[37] Rappold,et al. Human Molecular Genetics , 1996, Nature Medicine.