Stable Isotope Labeling of Amino Acids in Flies (SILAF) Reveals Differential Phosphorylation of Mitochondrial Proteins Upon Loss of OXPHOS Subunits
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M. Moedas | I. Atanassov | C. Freyer | A. Wredenberg | Javier Calvo-Garrido | A. Wedell | Florian A. Schober | David Moore | Christoph Freyer
[1] L. Käll,et al. The one-carbon pool controls mitochondrial energy metabolism via complex I and iron-sulfur clusters , 2021, Science Advances.
[2] I. Atanassov,et al. Quantitative Proteomics in Drosophila with Holidic Stable-Isotope Labeling of Amino Acids in Fruit Flies (SILAF). , 2020, Methods in molecular biology.
[3] A. Pajak,et al. Defects of mitochondrial RNA turnover lead to the accumulation of double-stranded RNA in vivo , 2019, PLoS genetics.
[4] Jing Wang,et al. WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs , 2019, Nucleic Acids Res..
[5] B. Habermann,et al. mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations , 2019, bioRxiv.
[6] Simon C. Potter,et al. The EMBL-EBI search and sequence analysis tools APIs in 2019 , 2019, Nucleic Acids Res..
[7] Martin Eisenacher,et al. The PRIDE database and related tools and resources in 2019: improving support for quantification data , 2018, Nucleic Acids Res..
[8] M. Mann,et al. Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis. , 2018, Developmental cell.
[9] Maojun Yang,et al. Structure of the intact 14-subunit human cytochrome c oxidase , 2018, Cell Research.
[10] Dorte B. Bekker-Jensen,et al. Benchmarking common quantification strategies for large-scale phosphoproteomics , 2018, Nature Communications.
[11] I. Atanassov,et al. Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals , 2017, eLife.
[12] M. Piper. Using artificial diets to understand the nutritional physiology of Drosophila melanogaster. , 2017, Current opinion in insect science.
[13] Maojun Yang,et al. Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2 , 2017, Cell.
[14] Matthew D. Dun,et al. Mutant JAK3 phosphoproteomic profiling predicts synergism between JAK3 inhibitors and MEK/BCL2 inhibitors for the treatment of T-cell acute lymphoblastic leukemia , 2017, Leukemia.
[15] Linda Partridge,et al. Matching Dietary Amino Acid Balance to the In Silico-Translated Exome Optimizes Growth and Reproduction without Cost to Lifespan , 2017, Cell metabolism.
[16] T. Miyamoto,et al. Gluconeogenesis: An ancient biochemical pathway with a new twist , 2017, Fly.
[17] M. Lovell,et al. Mutations in the accessory subunit NDUFB10 result in isolated complex I deficiency and illustrate the critical role of intermembrane space import for complex I holoenzyme assembly , 2016, Human molecular genetics.
[18] Minoru Kanehisa,et al. KEGG: new perspectives on genomes, pathways, diseases and drugs , 2016, Nucleic Acids Res..
[19] Jüergen Cox,et al. The MaxQuant computational platform for mass spectrometry-based shotgun proteomics , 2016, Nature Protocols.
[20] S. Lim,et al. Regulation of mitochondrial functions by protein phosphorylation and dephosphorylation , 2016, Cell & Bioscience.
[21] R. Fischer,et al. Proteomic changes in response to crystal formation in Drosophila Malpighian tubules , 2016, Fly.
[22] Karl R. Clauser,et al. MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins , 2015, Nucleic Acids Res..
[23] Javier García-Bermúdez,et al. PKA Phosphorylates the ATPase Inhibitory Factor 1 and Inactivates Its Capacity to Bind and Inhibit the Mitochondrial H(+)-ATP Synthase. , 2015, Cell reports.
[24] Matthew E. Ritchie,et al. limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.
[25] Bin Zhang,et al. PhosphoSitePlus, 2014: mutations, PTMs and recalibrations , 2014, Nucleic Acids Res..
[26] R. Harris,et al. PyTMs: a useful PyMOL plugin for modeling common post-translational modifications , 2014, BMC Bioinformatics.
[27] J. Olsen,et al. Off-line high-pH reversed-phase fractionation for in-depth phosphoproteomics. , 2014, Journal of proteome research.
[28] Marco Y. Hein,et al. Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ * , 2014, Molecular & Cellular Proteomics.
[29] Peter R Baker,et al. MS-Viewer: A Web-based Spectral Viewer for Proteomics Results* , 2014, Molecular & Cellular Proteomics.
[30] L. Jensen,et al. Proteomic Analysis of Arginine Methylation Sites in Human Cells Reveals Dynamic Regulation During Transcriptional Arrest* , 2014, Molecular & Cellular Proteomics.
[31] Linda Partridge,et al. A holidic medium for Drosophila melanogaster , 2013, Nature Methods.
[32] M. Mann,et al. Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry* , 2013, Molecular & Cellular Proteomics.
[33] David E. James,et al. Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2 , 2013, Cell metabolism.
[34] K. Khoo,et al. Evaluation of Drosophila metabolic labeling strategies for in vivo quantitative proteomic analyses with applications to early pupa formation and amino acid starvation. , 2013, Journal of proteome research.
[35] Derek J. Bailey,et al. A quantitative map of the liver mitochondrial phosphoproteome reveals posttranslational control of ketogenesis. , 2012, Cell metabolism.
[36] J. Enríquez,et al. NDUFA4 is a subunit of complex IV of the mammalian electron transport chain. , 2012, Cell metabolism.
[37] P. Jin,et al. Stable isotope labeling with amino acids in Drosophila for quantifying proteins and modifications. , 2012, Journal of proteome research.
[38] A. M. Tarone,et al. Genetic variation in the Yolk protein expression network of Drosophila melanogaster: sex-biased negative correlations with longevity , 2012, Heredity.
[39] C. Rocher,et al. Preservation of NADH ubiquinone-oxidoreductase activity by Src kinase-mediated phosphorylation of NDUFB10. , 2012, Biochimica et biophysica acta.
[40] Shao-En Ong. The expanding field of SILAC , 2012, Analytical and Bioanalytical Chemistry.
[41] L. Partridge,et al. The Bicoid Stability Factor Controls Polyadenylation and Expression of Specific Mitochondrial mRNAs in Drosophila melanogaster , 2011, PLoS genetics.
[42] P. Højrup,et al. Quantitative proteomics by amino acid labeling in C. elegans , 2011, Nature Methods.
[43] Bonnie Berger,et al. An integrative approach to ortholog prediction for disease-focused and other functional studies , 2011, BMC Bioinformatics.
[44] C. Hunte,et al. Functional Modules and Structural Basis of Conformational Coupling in Mitochondrial Complex I , 2010, Science.
[45] M. Hüttemann,et al. Phosphomimetic substitution of cytochrome C tyrosine 48 decreases respiration and binding to cardiolipin and abolishes ability to trigger downstream caspase activation. , 2010, Biochemistry.
[46] Matthias Selbach,et al. The SILAC Fly Allows for Accurate Protein Quantification in Vivo* , 2010, Molecular & Cellular Proteomics.
[47] D. Kass,et al. Modulation of Mitochondrial Proteome and Improved Mitochondrial Function by Biventricular Pacing of Dyssynchronous Failing Hearts , 2010, Circulation. Cardiovascular genetics.
[48] M. Mann,et al. SILAC Mouse for Quantitative Proteomics Uncovers Kindlin-3 as an Essential Factor for Red Blood Cell Function , 2008, Cell.
[49] Laura A. Sullivan,et al. Global Survey of Phosphotyrosine Signaling Identifies Oncogenic Kinases in Lung Cancer , 2007, Cell.
[50] D. Galati,et al. Site specific phosphorylation of cytochrome c oxidase subunits I, IVi1 and Vb in rabbit hearts subjected to ischemia/reperfusion , 2007, FEBS letters.
[51] L. Scorrano,et al. Organelle isolation: functional mitochondria from mouse liver, muscle and cultured filroblasts , 2007, Nature Protocols.
[52] Blagoy Blagoev,et al. Quantitative proteomics to study mitogen-activated protein kinases. , 2006, Methods.
[53] M. Mann,et al. Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK) , 2006, Nature Methods.
[54] M. Mann,et al. Identifying and quantifying in vivo methylation sites by heavy methyl SILAC , 2004, Nature Methods.
[55] Eric S. Lander,et al. Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[56] M. Mann,et al. Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics* , 2002, Molecular & Cellular Proteomics.
[57] B. Kadenbach,et al. Separation of mammalian cytochrome c oxidase into 13 polypeptides by a sodium dodecyl sulfate-gel electrophoretic procedure. , 1983, Analytical biochemistry.
[58] E. Krebs,et al. FURTHER STUDIES ON THE SITE PHOSPHORYLATED IN THE PHOSPHORYLASE B TO A REACTION. , 1964, Biochemistry.
[59] E. Krebs,et al. The phosphorylase b to a converting enzyme of rabbit skeletal muscle. , 1956, Biochimica et biophysica acta.