Whirly (Why) transcription factors in tomato (Solanum lycopersicum L.): genome-wide identification and transcriptional profiling under drought and salt stresses
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[1] J. Callis,et al. Identification and biochemical characterization of the fructokinase gene family in Arabidopsis thaliana , 2017, BMC Plant Biology.
[2] J. Thelen,et al. The proteome of higher plant mitochondria. , 2017, Mitochondrion.
[3] K. Krupinska,et al. Knockdown of WHIRLY1 Affects Drought Stress-Induced Leaf Senescence and Histone Modifications of the Senescence-Associated Gene HvS40 , 2016, Plants.
[4] Liisa Holm,et al. Dali server update , 2016, Nucleic Acids Res..
[5] Sudhir Kumar,et al. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.
[6] Hsien-Da Huang,et al. PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants , 2015, Nucleic Acids Res..
[7] Quan Zhang,et al. Elevation of Pollen Mitochondrial DNA Copy Number by WHIRLY2: Altered Respiration and Pollen Tube Growth in Arabidopsis1 , 2015, Plant Physiology.
[8] Don C. Jones,et al. Small RNA sequencing identifies miRNA roles in ovule and fibre development. , 2015, Plant biotechnology journal.
[9] G. Hensel,et al. WHIRLY1 is a major organizer of chloroplast nucleoids , 2014, Front. Plant Sci..
[10] C. Foyer,et al. The functions of WHIRLY1 and REDOX-RESPONSIVE TRANSCRIPTION FACTOR 1 in cross tolerance responses in plants: a hypothesis , 2014, Philosophical Transactions of the Royal Society B: Biological Sciences.
[11] J. Franco-Zorrilla,et al. DNA-binding specificities of plant transcription factors and their potential to define target genes , 2014, Proceedings of the National Academy of Sciences.
[12] N. Yadav,et al. MYB transcription factor genes as regulators for plant responses: an overview , 2013, Physiology and Molecular Biology of Plants.
[13] A. Dziembowski,et al. The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro , 2013, Nucleic acids research.
[14] R. Sunkar,et al. Functions of microRNAs in plant stress responses. , 2012, Trends in plant science.
[15] A. Fukushima,et al. Exploring Tomato Gene Functions Based on Coexpression Modules Using Graph Clustering and Differential Coexpression Approaches1[C][W][OA] , 2012, Plant Physiology.
[16] H. Koop,et al. Recombinant Whirly1 translocates from transplastomic chloroplasts to the nucleus , 2012, FEBS letters.
[17] David M. Goodstein,et al. Phytozome: a comparative platform for green plant genomics , 2011, Nucleic Acids Res..
[18] A. K. Swami,et al. Differential proteomic analysis of salt stress response in Sorghum bicolor leaves , 2011 .
[19] Patrick Xuechun Zhao,et al. psRNATarget: a plant small RNA target analysis server , 2011, Nucleic Acids Res..
[20] P. Duque. A role for SR proteins in plant stress responses , 2011, Plant signaling & behavior.
[21] Yoshiyuki Ogata,et al. Coexpression Analysis of Tomato Genes and Experimental Verification of Coordinated Expression of Genes Found in a Functionally Enriched Coexpression Module , 2010, DNA research : an international journal for rapid publication of reports on genes and genomes.
[22] Christopher S. Brown,et al. Increasing inositol (1,4,5)-trisphosphate metabolism affects drought tolerance, carbohydrate metabolism and phosphate-sensitive biomass increases in tomato. , 2010, Plant biotechnology journal.
[23] Staffan Persson,et al. Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. , 2009, Plant, cell & environment.
[24] Yang Xu,et al. Carbon nanotubes are able to penetrate plant seed coat and dramatically affect seed germination and plant growth. , 2009, ACS nano.
[25] A. Hitmi,et al. Expression of stress-related genes in tomato plants exposed to arsenic and chromium in nutrient solution. , 2009, Journal of plant physiology.
[26] A. Powell,et al. Ripening-Regulated Susceptibility of Tomato Fruit to Botrytis cinerea Requires NOR But Not RIN or Ethylene1[W][OA] , 2009, Plant Physiology.
[27] Mikael Bodén,et al. MEME Suite: tools for motif discovery and searching , 2009, Nucleic Acids Res..
[28] G. Friso,et al. A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis , 2008, Nucleic acids research.
[29] Peter Widmayer,et al. Genevestigator V3: A Reference Expression Database for the Meta-Analysis of Transcriptomes , 2008, Adv. Bioinformatics.
[30] Jean-Sébastien Parent,et al. Overexpression of mtDNA-associated AtWhy2 compromises mitochondrial function , 2008, BMC Plant Biology.
[31] I. Meier,et al. Anchorage of Plant RanGAP to the Nuclear Envelope Involves Novel Nuclear-Pore-Associated Proteins , 2007, Current Biology.
[32] C. J. Adams-Collier,et al. WoLF PSORT: protein localization predictor , 2007, Nucleic Acids Res..
[33] V. Valpuesta,et al. TPR Proteins in Plant Hormone Signaling , 2006, Plant signaling & behavior.
[34] S. Moss,et al. Annexins: linking Ca2+ signalling to membrane dynamics , 2005, Nature Reviews Molecular Cell Biology.
[35] J. Skolnick,et al. TM-align: a protein structure alignment algorithm based on the TM-score , 2005, Nucleic acids research.
[36] L. Holm,et al. The Pfam protein families database , 2005, Nucleic Acids Res..
[37] D. Desveaux,et al. Whirly transcription factors: defense gene regulation and beyond. , 2005, Trends in plant science.
[38] Homin K. Lee,et al. Coexpression analysis of human genes across many microarray data sets. , 2004, Genome research.
[39] J. Reyes,et al. The GATA Family of Transcription Factors in Arabidopsis and Rice1 , 2004, Plant Physiology.
[40] J. Dangl,et al. A "Whirly" transcription factor is required for salicylic acid-dependent disease resistance in Arabidopsis. , 2004, Developmental cell.
[41] V. Ambros,et al. Role of MicroRNAs in Plant and Animal Development , 2003, Science.
[42] David S. Wishart,et al. VADAR: a web server for quantitative evaluation of protein structure quality , 2003, Nucleic Acids Res..
[43] J. Sygusch,et al. A new family of plant transcription factors displays a novel ssDNA-binding surface , 2002, Nature Structural Biology.
[44] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[45] D. Desveaux,et al. PBF-2 Is a Novel Single-Stranded DNA Binding Factor Implicated in PR-10a Gene Activation in Potato , 2000, Plant Cell.
[46] D. Landsman,et al. AT-hook motifs identified in a wide variety of DNA-binding proteins. , 1998, Nucleic acids research.
[47] Christophe Geourjon,et al. SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments , 1995, Comput. Appl. Biosci..
[48] R. Dobson,et al. Dihydrodipicolinate Synthase: Structure, Dynamics, Function, and Evolution. , 2017, Sub-cellular biochemistry.
[49] Q. Meng,et al. Overexpression of tomato WHIRLY protein enhances tolerance to drought stress and resistance to Pseudomonas solanacearum in transgenic tobacco , 2017, Biologia Plantarum.
[50] M. Sternberg,et al. Protein structure prediction on the Web: a case study using the Phyre server , 2009, Nature Protocols.
[51] R D Appel,et al. Protein identification and analysis tools in the ExPASy server. , 1999, Methods in molecular biology.
[52] T. A. Hall,et al. BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .
[53] L. Pauling,et al. Evolutionary Divergence and Convergence in Proteins , 1965 .
[54] Thomas D. Schmittgen,et al. Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method , 2022 .