Genomic Clues to the Evolutionary Success of Polyploid Plants

[1]  A. Müntzing ÜBER CHROMOSOMENVERMEHRUNG IN GALEOPSIS‐KREUZUNGEN UND IHRE PHYLOGENETISCHE BEDEUTUNG , 2010 .

[2]  G. Barker,et al.  Changes to gene expression associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio , 2008, Philosophical Transactions of the Royal Society B: Biological Sciences.

[3]  V. Walbot,et al.  The MuDR transposon terminal inverted repeat contains a complex plant promoter directing distinct somatic and germinal programs. , 2008, The Plant journal : for cell and molecular biology.

[4]  S. Hiscock,et al.  Polyploidy: Doubling up for Evolutionary Success , 2007, Current Biology.

[5]  J. Pires,et al.  Genomic Changes in Resynthesized Brassica napus and Their Effect on Gene Expression and Phenotype[W][OA] , 2007, The Plant Cell Online.

[6]  K. Adams,et al.  Expression Partitioning between Genes Duplicated by Polyploidy under Abiotic Stress and during Organ Development , 2007, Current Biology.

[7]  Nathan M. Springer,et al.  Nonadditive Expression and Parent-of-Origin Effects Identified by Microarray and Allele-Specific Expression Profiling of Maize Endosperm1[W][OA] , 2007, Plant Physiology.

[8]  L. Rieseberg,et al.  Plant Speciation , 2007, Science.

[9]  M. Chapman,et al.  GENETIC DIVERGENCE AND HYBRID SPECIATION , 2007, Evolution; international journal of organic evolution.

[10]  Z. Chen,et al.  Roles of dynamic and reversible histone acetylation in plant development and polyploidy. , 2007, Biochimica et biophysica acta.

[11]  Z. Chen,et al.  Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. , 2007, Annual review of plant biology.

[12]  Thierry Balliau,et al.  Differential regulation of gene products in newly synthesized Brassica napus allotetraploids is not related to protein function nor subcellular localization , 2007, BMC Genomics.

[13]  Douglas E. Soltis,et al.  Autopolyploidy in angiosperms: Have we grossly underestimated the number of species? , 2007 .

[14]  J. Pannell,et al.  ECOLOGICAL DIFFERENTIATION AND DIPLOID SUPERIORITY ACROSS A MOVING PLOIDY CONTACT ZONE , 2007, Evolution; international journal of organic evolution.

[15]  M. Ungerer,et al.  Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation , 2006, Current Biology.

[16]  G. Barker,et al.  Transcriptome Shock after Interspecific Hybridization in Senecio Is Ameliorated by Genome Duplication , 2006, Current Biology.

[17]  I. Baldwin,et al.  Innovation in anti-herbivore defense systems during neopolypoloidy - the functional consequences of instantaneous speciation. , 2006, The Plant journal : for cell and molecular biology.

[18]  D. Soltis,et al.  Evolution and Expression of Homeologous Loci in Tragopogon miscellus (Asteraceae), a Recent and Reciprocally Formed Allopolyploid , 2006, Genetics.

[19]  Z. Chen,et al.  Nonadditive Regulation of FRI and FLC Loci Mediates Flowering-Time Variation in Arabidopsis Allopolyploids , 2006, Genetics.

[20]  L. Rieseberg,et al.  Microarray analysis reveals differential gene expression in hybrid sunflower species , 2006, Molecular ecology.

[21]  Zhongfu Ni,et al.  Mechanisms of genomic rearrangements and gene expression changes in plant polyploids. , 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.

[22]  J. Udall,et al.  Quantitative trait loci for resistance to Sclerotinia sclerotiorum and its association with a homeologous non-reciprocal transposition in Brassica napus L. , 2006, Theoretical and Applied Genetics.

[23]  R W Doerge,et al.  Genomewide Nonadditive Gene Regulation in Arabidopsis Allotetraploids , 2006, Genetics.

[24]  R. Gregory The evolution of the genome , 2005 .

[25]  R. Abbott,et al.  RECENT, ALLOPATRIC, HOMOPLOID HYBRID SPECIATION: THE ORIGIN OF SENECIO SQUALIDUS (ASTERACEAE) IN THE BRITISH ISLES FROM A HYBRID ZONE ON MOUNT ETNA, SICILY , 2005, Evolution; international journal of organic evolution.

[26]  E. Baack Ecological factors influencing tetraploid establishment in snow buttercups (Ranunculus adoneus , Ranunculaceae): minority cytotype exclusion and barriers to triploid formation. , 2005, American journal of botany.

[27]  E. Baack,et al.  ECOLOGICAL FACTORS INFLUENCING TETRAPLOID SPECIATION IN SNOW BUTTERCUPS (RANUNCULUS ADONEUS): NICHE DIFFERENTIATION AND TETRAPLOID ESTABLISHMENT , 2005, Evolution; international journal of organic evolution.

[28]  G. Barker,et al.  Development of anonymous cDNA microarrays to study changes to the Senecio floral transcriptome during hybrid speciation , 2005, Molecular ecology.

[29]  E. Baack,et al.  To succeed globally, disperse locally: effects of local pollen and seed dispersal on tetraploid establishment , 2005, Heredity.

[30]  J. Wendel,et al.  Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae) , 2005, Molecular ecology.

[31]  M. Feldman,et al.  Allopolyploidy – a shaping force in the evolution of wheat genomes , 2005, Cytogenetic and Genome Research.

[32]  Jonathan F Wendel,et al.  Organ-Specific Silencing of Duplicated Genes in a Newly Synthesized Cotton Allotetraploid , 2004, Genetics.

[33]  Z. Jeffrey Chen,et al.  Stochastic and Epigenetic Changes of Gene Expression in Arabidopsis Polyploids , 2004, Genetics.

[34]  L. Lukens,et al.  Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae) , 2004 .

[35]  Guillaume Blanc,et al.  Widespread Paleopolyploidy in Model Plant Species Inferred from Age Distributions of Duplicate Genes , 2004, The Plant Cell Online.

[36]  M. Ridout,et al.  Modelling the establishment and spread of autotetraploid plants in a spatially heterogeneous environment , 2004, Journal of evolutionary biology.

[37]  D. Levin The ecological transition in speciation , 2003 .

[38]  A. Sharpe,et al.  Detection and effects of a homeologous reciprocal transposition in Brassica napus. , 2003, Genetics.

[39]  J. Birchler,et al.  Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids. , 2003, Trends in genetics : TIG.

[40]  S. Otto In polyploids, one plus one does not equal two , 2003 .

[41]  L. Rieseberg,et al.  THE ORIGIN OF ECOLOGICAL DIVERGENCE IN HELIANTHUS PARADOXUS (ASTERACEAE): SELECTION ON TRANSGRESSIVE CHARACTERS IN A NOVEL HYBRID HABITAT , 2003, Evolution; international journal of organic evolution.

[42]  L. Rieseberg,et al.  Major Ecological Transitions in Wild Sunflowers Facilitated by Hybridization , 2003, Science.

[43]  J. Paszkowski,et al.  Formation of stable epialleles and their paramutation-like interaction in tetraploid Arabidopsis thaliana , 2003, Nature Genetics.

[44]  A. Tyagi,et al.  Do the different parental 'heteromes' cause genomic shock in newly formed allopolyploids? , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[45]  L. Rieseberg,et al.  Natural selection for salt tolerance quantitative trait loci (QTLs) in wild sunflower hybrids: Implications for the origin of Helianthus paradoxus, a diploid hybrid species , 2003, Molecular ecology.

[46]  A. Ferrús,et al.  Expression of enhancers is altered in Drosophila melanogaster hybrids , 2003, Evolution & development.

[47]  E. Kellogg What happens to genes in duplicated genomes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[48]  Jonathan F. Wendel,et al.  Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[49]  Klaas Vandepoele,et al.  The hidden duplication past of Arabidopsis thaliana , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[50]  G. Moore Meiosis in allopolyploids -- the importance of 'Teflon' chromosomes. , 2002, Trends in genetics : TIG.

[51]  Andreas Madlung,et al.  Remodeling of DNA Methylation and Phenotypic and Transcriptional Changes in Synthetic Arabidopsis Allotetraploids1 , 2002, Plant Physiology.

[52]  J. Thompson,et al.  Plant polyploidy and non-uniform effects on insect herbivores , 2001, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[53]  M. Feldman,et al.  Sequence Elimination and Cytosine Methylation Are Rapid and Reproducible Responses of the Genome to Wide Hybridization and Allopolyploidy in Wheat , 2001, The Plant Cell Online.

[54]  A. Tyagi,et al.  Phenotypic Instability and Rapid Gene Silencing in Newly Formed Arabidopsis Allotetraploids , 2000, Plant Cell.

[55]  D. Soltis,et al.  The role of genetic and genomic attributes in the success of polyploids. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[56]  B. Husband Constraints on polyploid evolution: a test of the minority cytotype exclusion principle , 2000, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[57]  C. Pikaard,et al.  Nucleolar dominance and silencing of transcription. , 1999, Trends in plant science.

[58]  L. Rieseberg,et al.  Transgressive segregation, adaptation and speciation , 1999, Heredity.

[59]  D. Soltis,et al.  Polyploidy: recurrent formation and genome evolution. , 1999, Trends in ecology & evolution.

[60]  M. Purugganan,et al.  Interspecific hybrid ancestry of a plant adaptive radiation: allopolyploidy of the Hawaiian silversword alliance (Asteraceae) inferred from floral homeotic gene duplications. , 1999, Molecular biology and evolution.

[61]  Z. Chen,et al.  Gene dosage and stochastic effects determine the severity and direction of uniparental ribosomal RNA gene silencing (nucleolar dominance) in Arabidopsis allopolyploids. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[62]  D. Schemske,et al.  PATHWAYS, MECHANISMS, AND RATES OF POLYPLOID FORMATION IN FLOWERING PLANTS , 1998 .

[63]  L. Rieseberg,et al.  Rapid hybrid speciation in wild sunflowers. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[64]  M. Matzke,et al.  Polyploidy and transposons. , 1998, Trends in ecology & evolution.

[65]  K. Devos,et al.  Comparative genetics in the grasses. , 1998, Plant molecular biology.

[66]  I. Leitch,et al.  Polyploidy in angiosperms , 1997 .

[67]  Loren H. Rieseberg,et al.  Hybrid Origins of Plant Species , 1997 .

[68]  G. Segal,et al.  Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes. , 1997, Genetics.

[69]  Z. Chen,et al.  Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance. , 1997, Genes & development.

[70]  Loren H. Rieseberg,et al.  Role of Gene Interactions in Hybrid Speciation: Evidence from Ancient and Experimental Hybrids , 1996, Science.

[71]  J. Tainer,et al.  Subunit-destabilizing mutations in Drosophila copper/zinc superoxide dismutase: neuropathology and a model of dimer dysequilibrium. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[72]  P. Lu,et al.  Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[73]  J. Bennetzen,et al.  Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize. , 1994, The Plant cell.

[74]  S. Wessler,et al.  Molecular evidence that chromosome breakage by Ds elements is caused by aberrant transposition. , 1993, The Plant cell.

[75]  A. Barkan,et al.  Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[76]  M. Alleman,et al.  Gametic imprinting in maize in relation to the angiosperm life cycle. , 1990, Development (Cambridge, England). Supplement.

[77]  R. Reeder Mechanisms of nucleolar dominance in animals and plants , 1985, The Journal of cell biology.

[78]  B. Mcclintock,et al.  The significance of responses of the genome to challenge. , 1984, Science.

[79]  W. Berg,et al.  Paramutation at the sulfurea locus of Lycopersicon esculentum Mill. , 1978, Theoretical and Applied Genetics.

[80]  D. Levin MINORITY CYTOTYPE EXCLUSION IN LOCAL PLANT POPULATIONS , 1975 .

[81]  Dr. Susumu Ohno Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.

[82]  G. Ledyard Stebbins,et al.  Variation and Evolution in Plants , 1951 .

[83]  T. H. Goodspeed,et al.  Interspecific Hybridization in Nicotiana. II. a Tetraploid GLUTINOSA-TABACUM Hybrid, an Experimental Verification of Winge's Hypothesis. , 1925, Genetics.

[84]  A. M. Lutz,et al.  A PRELIMINARY NOTE ON THE CHROMOSOMES OF OEligNOTHERA LAMARCKIANA AND ONE OF ITS MUTANTS, O. GIGAS. , 1907, Science.

[85]  Arch. f. Zellforschung The stature and chromosomes of Oenothera gigas, De Vries , 2005, Zeitschrift für Induktive Abstammungs- und Vererbungslehre.

[86]  D. Soltis,et al.  Polyploidy in Plants , 2005 .

[87]  M. Morgan,et al.  THE EFFECT OF SELF-FERTILIZATION, INBREEDING DEPRESSION, AND POPULATION SIZE ON AUTOPOLYPLOID ESTABLISHMENT , 2005 .

[88]  Jonathan F. Wendel,et al.  Genome evolution in polyploids , 2004, Plant Molecular Biology.

[89]  A. Levy,et al.  Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat , 2003, Nature Genetics.

[90]  D. Levin The Role of Chromosomal Change in Plant Evolution , 2002 .

[91]  J. Wendel,et al.  Polyploid formation in cotton is not accompanied by rapid genomic changes. , 2001, Genome.

[92]  S. Otto,et al.  Polyploid incidence and evolution. , 2000, Annual review of genetics.

[93]  A. Force,et al.  The probability of duplicate gene preservation by subfunctionalization. , 2000, Genetics.

[94]  D. Soltis,et al.  Molecular data and the dynamic nature of polyploidy , 1993 .

[95]  R. Abbott,et al.  Multiple origins and genetic diversity in the newly arisen allopolyploid species, Senecio cambrensis Rosser (Compositae) , 1992, Heredity.

[96]  G. Stebbins Polyploidy, hybridization, and the invasion of new habitats. , 1985 .

[97]  A. D. Brown Evolutionary changes accompanying colonization in plants , 1981 .

[98]  W. Lewis Polyploidy : biological relevance , 1980 .

[99]  F. Ehrendorfer,et al.  Polyploidy and distribution. , 1979, Basic life sciences.

[100]  G. Ledyard Stebbins,et al.  Chromosomal evolution in higher plants , 1971 .

[101]  Recent advances in cytology. Second edition , 1938, Protoplasma.

[102]  C. D. Darlington Recent advances in cytology , 1932 .

[103]  O. Winge The chromosome. Their numbers and general importance. , 1917 .

[104]  O. Witte,et al.  Stomatal Size in Fossil Plants : Evidence for Polyploidy in Majority of Angiosperms , 2022 .