Enhancement of proton conductance by mutations of the selectivity filter of aquaporin-1.
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Gregory A Voth | Binghua Wu | Eric Beitz | Thomas Zeuthen | Hui Li | G. Voth | Hui Li | Binghua Wu | E. Beitz | Hanning Chen | T. Zeuthen | Hanning Chen | Christina Steinbronn | Christina Steinbronn
[1] Jessica M J Swanson,et al. Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations. , 2007, The journal of physical chemistry. B.
[2] G. Ning,et al. Aquaporin-1 water channel expression in human kidney. , 1997, Journal of the American Society of Nephrology : JASN.
[3] G. Voth,et al. Redox-coupled proton pumping in cytochrome c oxidase: further insights from computer simulation. , 2008, Biochimica et biophysica acta.
[4] B. Wallace,et al. The pore dimensions of gramicidin A. , 1993, Biophysical journal.
[5] I. Todorov,et al. The DL_POLY molecular dynamics package , 2005 .
[6] He-feng Huang,et al. Expression of aquaporin‐1 in normal, hyperplasic, and carcinomatous endometria , 2008, International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics.
[7] B. Roux,et al. Structure, energetics, and dynamics of lipid–protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer , 1996, Proteins.
[8] S. Nosé. A unified formulation of the constant temperature molecular dynamics methods , 1984 .
[9] G. Voth,et al. Charge delocalization in proton channels, II: the synthetic LS2 channel and proton selectivity. , 2007, Biophysical journal.
[10] M. Duszenko,et al. Ammonia permeability of the aquaglyceroporins from Plasmodium falciparum, Toxoplasma gondii and Trypansoma brucei , 2006, Molecular microbiology.
[11] F. Magni,et al. AQP1 expression analysis in human diseases: implications for proteomic characterization , 2008, Expert review of proteomics.
[12] E. Tajkhorshid,et al. Molecular basis of proton blockage in aquaporins. , 2004, Structure.
[13] M. Borgnia,et al. Cellular and molecular biology of the aquaporin water channels. , 1999, Annual review of biochemistry.
[14] M. Jensen,et al. Hydroxide and proton migration in aquaporins. , 2005, Biophysical journal.
[15] D. Levitt. General continuum theory for multiion channel. I. Theory. , 1991, Biophysical journal.
[16] A. Warshel,et al. What really prevents proton transport through aquaporin? Charge self-energy versus proton wire proposals. , 2003, Biophysical journal.
[17] A. Warshel,et al. On the origin of the electrostatic barrier for proton transport in aquaporin , 2004, FEBS letters.
[18] G. Voth,et al. A computer simulation study of the hydrated proton in a synthetic proton channel. , 2003, Biophysical journal.
[19] Gregory A Voth,et al. Computer simulation of proton solvation and transport in aqueous and biomolecular systems. , 2006, Accounts of chemical research.
[20] S. Sasaki,et al. Molecular mechanisms and drug development in aquaporin water channel diseases: aquaporin superfamily (superaquaporins): expansion of aquaporins restricted to multicellular organisms. , 2004, Journal of pharmacological sciences.
[21] P. M. Rodger,et al. DL_POLY: Application to molecular simulation , 2002 .
[22] Peter Agre,et al. Aquaporin water channels: molecular mechanisms for human diseases1 , 2003, FEBS letters.
[23] K. Schulten,et al. The mechanism of proton exclusion in aquaporin channels , 2004, Proteins.
[24] Helmut Grubmüller,et al. The dynamics and energetics of water permeation and proton exclusion in aquaporins. , 2005, Current opinion in structural biology.
[25] Gregory A Voth,et al. Computer simulation of explicit proton translocation in cytochrome c oxidase: the D-pathway. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[26] Benoît Roux,et al. Ion transport in a gramicidin-like channel: dynamics and mobility , 1991 .
[27] Gregory A. Voth,et al. Multistate Empirical Valence Bond Model for Proton Transport in Water , 1998 .
[28] G. Voth,et al. Storage of an excess proton in the hydrogen-bonded network of the d-pathway of cytochrome C oxidase: identification of a protonated water cluster. , 2007, Journal of the American Chemical Society.
[29] Thomas P. Jahn,et al. NH3 and NH4+ permeability in aquaporin-expressing Xenopus oocytes , 2005, Pflügers Archiv.
[30] G. Voth,et al. Free energy profiles for H+ conduction in the D-pathway of Cytochrome c Oxidase: a study of the wild type and N98D mutant enzymes. , 2006, Biochimica et biophysica acta.
[31] K. Schulten,et al. Theory and simulation of water permeation in aquaporin-1. , 2004, Biophysical journal.
[32] J. Valleau,et al. A Monte Carlo method for obtaining the interionic potential of mean force in ionic solution , 1975 .
[33] Peter Agre,et al. From structure to disease: the evolving tale of aquaporin biology , 2004, Nature Reviews Molecular Cell Biology.
[34] Willy Wriggers,et al. Spanning the length scales of biomolecular simulation. , 2004, Structure.
[35] J. Banavar,et al. Computer Simulation of Liquids , 1988 .
[36] D. Levitt. Interpretation of biological ion channel flux data--reaction-rate versus continuum theory. , 1986, Annual review of biophysics and biophysical chemistry.
[37] D. Raldúa,et al. Differential localization and regulation of two aquaporin-1 homologs in the intestinal epithelia of the marine teleost Sparus aurata. , 2008, American journal of physiology. Regulatory, integrative and comparative physiology.
[38] Ilian T. Todorov,et al. A short description of DL_POLY , 2006 .
[39] N. Agmon,et al. The Grotthuss mechanism , 1995 .
[40] Neil A Castle,et al. Aquaporins as targets for drug discovery. , 2005, Drug discovery today.
[41] Klaus Schulten,et al. Charge delocalization in proton channels, I: the aquaporin channels and proton blockage. , 2007, Biophysical journal.
[42] B. Roux. The calculation of the potential of mean force using computer simulations , 1995 .
[43] T. Darden,et al. Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems , 1993 .
[44] K. Schulten,et al. Control of the Selectivity of the Aquaporin Water Channel Family by Global Orientational Tuning , 2002, Science.
[45] G. Voth,et al. Origins of proton transport behavior from selectivity domain mutations of the aquaporin-1 channel. , 2006, Biophysical journal.
[46] B. Roux,et al. Ion permeation through a narrow channel: using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields. , 2006, Biophysical journal.
[47] Rebecca A Robbins,et al. Crystal structure of human aquaporin 4 at 1.8 Å and its mechanism of conductance , 2009, Proceedings of the National Academy of Sciences.
[48] Arieh Warshel,et al. The barrier for proton transport in aquaporins as a challenge for electrostatic models: The role of protein relaxation in mutational calculations , 2006, Proteins.
[49] R. Swendsen,et al. THE weighted histogram analysis method for free‐energy calculations on biomolecules. I. The method , 1992 .
[50] Binghua Wu,et al. Point mutations in the aromatic/arginine region in aquaporin 1 allow passage of urea, glycerol, ammonia, and protons. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[51] G. Voth,et al. Molecular dynamics simulation of proton transport through the influenza A virus M2 channel. , 2002, Biophysical journal.
[52] Hoover,et al. Canonical dynamics: Equilibrium phase-space distributions. , 1985, Physical review. A, General physics.
[53] Gerhard Hummer,et al. Position-dependent diffusion coefficients and free energies from Bayesian analysis of equilibrium and replica molecular dynamics simulations , 2005 .
[54] Ronald M. Welch,et al. Climatic Impact of Tropical Lowland Deforestation on Nearby Montane Cloud Forests , 2001, Science.
[55] Gregory A. Voth,et al. A second generation multistate empirical valence bond model for proton transport in aqueous systems , 2002 .
[56] P. Kollman,et al. A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules , 1995 .
[57] Gregory A Voth,et al. Proton transport behavior through the influenza A M2 channel: insights from molecular simulation. , 2007, Biophysical journal.
[58] Gregory A. Voth,et al. The computer simulation of proton transport in water , 1999 .
[59] K. Schulten,et al. Electrostatic tuning of permeation and selectivity in aquaporin water channels. , 2003, Biophysical journal.
[60] A. Verkman. More than just water channels: unexpected cellular roles of aquaporins , 2005, Journal of Cell Science.
[61] S. Hisamatsu,et al. Aquaporin 1 expression in tissues of canines possessing inherited high K+ erythrocytes , 2008, Journal of veterinary science.
[62] B. Roux,et al. Energetics of ion conduction through the gramicidin channel , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[63] B. L. de Groot,et al. The mechanism of proton exclusion in the aquaporin-1 water channel. , 2003, Journal of molecular biology.
[64] William K. Smith,et al. Guest Editorial: DL_POLY–applications to molecular simulation II , 2006 .
[65] John E. Straub,et al. Classical and modern methods in reaction rate theory , 1988 .
[66] Binghua Wu,et al. Concerted action of two cation filters in the aquaporin water channel , 2009, The EMBO journal.
[67] Origins of enhanced proton transport in the Y7F mutant of human carbonic anhydrase II. , 2008, Journal of the American Chemical Society.