Canonical, stable, general mapping using context schemes
暂无分享,去创建一个
David Haussler | Benedict Paten | Adam M. Novak | Yohei Rosen | Yohei M. Rosen | D. Haussler | B. Paten
[1] Heng Li,et al. A survey of sequence alignment algorithms for next-generation sequencing , 2010, Briefings Bioinform..
[2]
R. Durbin,et al.
Mapping Quality Scores Mapping Short Dna Sequencing Reads and Calling Variants Using P ,
2022
.
[3]
Eugene W. Myers,et al.
Computability of Models for Sequence Assembly
,
2007,
WABI.
[4]
David Haussler,et al.
Cactus Graphs for Genome Comparisons
,
2010,
RECOMB.
[5]
H. Swerdlow,et al.
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
,
2012,
BMC Genomics.
[6]
Gonçalo R. Abecasis,et al.
The Sequence Alignment/Map format and SAMtools
,
2009,
Bioinform..
[7]
David Haussler,et al.
Alignathon: a competitive assessment of whole-genome alignment methods
,
2014,
bioRxiv.
[8]
Mary Goldman,et al.
The UCSC Genome Browser database: extensions and updates 2013
,
2012,
Nucleic Acids Res..
[9]
Helen E White,et al.
Evaluation of methods to detect CALR mutations in myeloproliferative neoplasms.
,
2015,
Leukemia research.
[10]
Cole Trapnell,et al.
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
,
2009,
Genome Biology.
[11]
Deanna M. Church,et al.
Genome Reference Consortium
,
2013
.
[12]
R. Wilson,et al.
Modernizing Reference Genome Assemblies
,
2011,
PLoS biology.
[13]
Adam M. Novak,et al.
Mapping to a Reference Genome Structure
,
2014,
1404.5010.
[14]
Elena S. Babaylova,et al.
Complete sequence and gene map of a human major histocompatibility complex
,
1999,
Nature.
[15]
R. Durbin,et al.
Dindel: accurate indel calls from short-read data.
,
2011,
Genome research.
[16]
Elizabeth M. Smigielski,et al.
dbSNP: the NCBI database of genetic variation
,
2001,
Nucleic Acids Res..
[17]
S. Salzberg,et al.
Alignment of whole genomes.
,
1999,
Nucleic acids research.
[18]
Gen Tamiya,et al.
Complete sequence and gene map of a human major histocompatibility complex
,
1999
.
[19]
Heng Li.
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
,
2013,
1303.3997.
[20]
Thomas R. Gingeras,et al.
STAR: ultrafast universal RNA-seq aligner
,
2013,
Bioinform..
[21]
Mary Goldman,et al.
The UCSC Genome Browser database: extensions and updates 2011
,
2011,
Nucleic Acids Res..
[22]
Robert S. Harris,et al.
Improved pairwise alignment of genomic dna
,
2007
.
[23]
Richard Durbin,et al.
Fast and accurate long-read alignment with Burrows–Wheeler transform
,
2010,
Bioinform..
[24]
Gil McVean,et al.
Improved genome inference in the MHC using a population reference graph
,
2014,
Nature Genetics.
[25]
Richard Durbin,et al.
Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform
,
2009
.
[26]
David Haussler,et al.
Comparative assembly hubs: Web-accessible browsers for comparative genomics
,
2013,
Bioinform..