Elucidation of the Electrocatalytic Nitrite Reduction Mechanism by Bio-Inspired Copper Complexes

Mononuclear copper complexes relevant to the active site of copper nitrite reductases (CuNiRs) are known to be catalytically active for the reduction of nitrite. Yet, their catalytic mechanism has thus far not been resolved. Here, we provide a complete description of the electrocatalytic nitrite reduction mechanism of a bio-inspired CuNiR catalyst Cu(tmpa) (tmpa = tris(2-pyridylmethyl)amine) in aqueous solution. Through a combination of electrochemical studies, reaction kinetics, and density functional theory (DFT) computations, we show that the protonation steps take place in a stepwise manner and are decoupled from electron transfer. The rate-determining step is a general acid-catalyzed protonation of a copper-ligated nitrous acid (HNO2) species. In view of the growing urge to convert nitrogen-containing compounds, this work provides principal reaction parameters for efficient electrochemical nitrite reduction. This contributes to the investigation and development of nitrite reduction catalysts, which is crucial to restore the biogeochemical nitrogen cycle.

[1]  K. Karlin,et al.  Reductive Coupling of Nitric Oxide by Cu(I): Stepwise Formation of Mono- and Dinitrosyl Species En Route to a Cupric Hyponitrite Intermediate. , 2023, Journal of the American Chemical Society.

[2]  E. Jakubikova,et al.  Buffer Assists Electrocatalytic Nitrite Reduction by a Cobalt Macrocycle Complex. , 2022, Inorganic chemistry.

[3]  N. Lehnert,et al.  The Biologically Relevant Coordination Chemistry of Iron and Nitric Oxide: Electronic Structure and Reactivity. , 2021, Chemical reviews.

[4]  D. Hetterscheid,et al.  Mechanistic Study of the Activation and the Electrocatalytic Reduction of Hydrogen Peroxide by Cu‐tmpa in Neutral Aqueous Solution , 2021, ChemElectroChem.

[5]  E. Matson,et al.  Electrocatalytic Multielectron Nitrite Reduction in Water by an Iron Complex , 2020 .

[6]  D. Hetterscheid,et al.  Fast Oxygen Reduction Catalyzed by a Copper(II) Tris(2-pyridylmethyl)amine Complex through a Stepwise Mechanism. , 2019, Angewandte Chemie.

[7]  M. Meyerhoff,et al.  Nitric Oxide Generation On Demand for Biomedical Applications via Electrocatalytic Nitrite Reduction by Copper BMPA- and BEPA-Carboxylate Complexes. , 2019, ACS catalysis.

[8]  C. Bannwarth,et al.  A generally applicable atomic-charge dependent London dispersion correction. , 2018, The Journal of chemical physics.

[9]  Mark E. Meyerhoff,et al.  Comparison of Copper(II)-Ligand Complexes as Mediators for Preparing Electrochemically Modulated Nitric Oxide-Releasing Catheters. , 2018, ACS applied materials & interfaces.

[10]  P. Wheatley,et al.  Proton-Coupled-Electron Transfer Enhances the Electrocatalytic Reduction of Nitrite to NO in a Bioinspired Copper Complex , 2018 .

[11]  M. Olmstead,et al.  A Copper(II) Nitrite That Exhibits Change of Nitrite Binding Mode and Formation of Copper(II) Nitrosyl Prior to Nitric Oxide Evolution. , 2018, Inorganic chemistry.

[12]  R. Bartlett,et al.  Portable Nitric Oxide (NO) Generator Based on Electrochemical Reduction of Nitrite for Potential Applications in Inhaled NO Therapy and Cardiopulmonary Bypass Surgery. , 2017, Molecular pharmaceutics.

[13]  K. Karlin,et al.  Copper(I)/NO(g) Reductive Coupling Producing a trans-Hyponitrite Bridged Dicopper(II) Complex: Redox Reversal Giving Copper(I)/NO(g) Disproportionation. , 2017, Journal of the American Chemical Society.

[14]  H. Senn,et al.  An investigation into the unusual linkage isomerization and nitrite reduction activity of a novel tris(2-pyridyl) copper complex , 2017, Royal Society Open Science.

[15]  Elizabeth T. Papish,et al.  Electrochemical reduction of Ttz copper(II) complexes in the presence and absence of protons: Processes relevant to enzymatic nitrite reduction (Ttz R,R′ = tris(3-R, 5-R′-1, 2, 4-triazolyl)borate) , 2017 .

[16]  S. Carpenter,et al.  Planetary boundaries: Guiding human development on a changing planet , 2015, Science.

[17]  J. Bernholc,et al.  Enzymatic mechanism of copper-containing nitrite reductase. , 2015, Biochemistry.

[18]  J. Savéant,et al.  Multielectron, Multistep Molecular Catalysis of Electrochemical Reactions: Benchmarking of Homogeneous Catalysts , 2014 .

[19]  L. Maia,et al.  How biology handles nitrite. , 2014, Chemical reviews.

[20]  Robert H. Bartlett,et al.  Electrochemically Modulated Nitric Oxide (NO) Releasing Biomedical Devices via Copper(II)-Tri(2-pyridylmethyl)amine Mediated Reduction of Nitrite , 2014, ACS applied materials & interfaces.

[21]  K. Karlin,et al.  Nitric oxide generation from heme/copper assembly mediated nitrite reductase activity , 2014, JBIC Journal of Biological Inorganic Chemistry.

[22]  M. Schoenfisch,et al.  Nitric oxide-flux dependent bacterial adhesion and viability at fibrinogen-coated surfaces. , 2013, Biomaterials science.

[23]  M. Olmstead,et al.  Copper complexes relevant to the catalytic cycle of copper nitrite reductase: electrochemical detection of NO(g) evolution and flipping of NO2 binding mode upon Cu(II) → Cu(I) reduction. , 2013, Inorganic chemistry.

[24]  Antoine Gomila,et al.  Electrocatalytic reduction of nitrite ions by a copper complex attached as SAMs on gold by “self-induced electroclick”: Enhancement of the catalytic rate by surface coverage decrease , 2013 .

[25]  J. Galloway,et al.  A chronology of human understanding of the nitrogen cycle† , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.

[26]  K. Karlin,et al.  Heme/copper assembly mediated nitrite and nitric oxide interconversion. , 2012, Journal of the American Chemical Society.

[27]  M. Chiang,et al.  Copper(I) nitro complex with an anionic [HB(3,5-Me2Pz)3]− ligand: a synthetic model for the copper nitrite reductase active site. , 2012, Inorganic chemistry.

[28]  M. Zeller,et al.  Hydrotris(triazolyl)borate complexes as functional models for Cu nitrite reductase: the electronic influence of distal nitrogens. , 2012, Inorganic chemistry.

[29]  Cong Han,et al.  Proton-coupled electron transfer in the catalytic cycle of Alcaligenes xylosoxidans copper-dependent nitrite reductase. , 2011, Biochemistry.

[30]  Biplab Mondal,et al.  Nitric oxide reduction of copper(II) complexes: spectroscopic evidence of copper(II)-nitrosyl intermediate. , 2011, Inorganic chemistry.

[31]  William T Eckenhoff,et al.  Structural comparison of copper(I) and copper(II) complexes with tris(2-pyridylmethyl)amine ligand. , 2010, Inorganic chemistry.

[32]  Guang Wu,et al.  Structural characterization of a copper nitrosyl complex with a {CuNO}10 configuration. , 2010, Journal of the American Chemical Society.

[33]  Pankaj Kumar,et al.  Reduction of copper(II) complexes of tripodal ligands by nitric oxide and trinitrosation of the ligands. , 2010, Journal of the American Chemical Society.

[34]  R. Bartlett,et al.  The attenuation of platelet and monocyte activation in a rabbit model of extracorporeal circulation by a nitric oxide releasing polymer. , 2010, Biomaterials.

[35]  Abhishek Dey,et al.  Spectroscopic and computational studies of nitrite reductase: proton induced electron transfer and backbonding contributions to reactivity. , 2009, Journal of the American Chemical Society.

[36]  H. Fujii,et al.  Effect of a tridentate ligand on the structure, electronic structure, and reactivity of the copper(I) nitrite complex: role of the conserved three-histidine ligand environment of the type-2 copper site in copper-containing nitrite reductases. , 2008, Journal of the American Chemical Society.

[37]  Ken-ichi Okamoto,et al.  Structural and spectroscopic characterization of mononuclear copper(I) nitrosyl complexes: end-on versus side-on coordination of NO to copper(I). , 2008, Journal of the American Chemical Society.

[38]  A. Dey,et al.  Resolution of the spectroscopy versus crystallography issue for NO intermediates of nitrite reductase from Rhodobacter sphaeroides. , 2007, Journal of the American Chemical Society.

[39]  Per E. M. Siegbahn,et al.  Elucidating the mechanism for the reduction of nitrite by copper nitrite reductase—A contribution from quantum chemical studies , 2007, J. Comput. Chem..

[40]  L. Que,et al.  Spectroscopic and kinetic studies of the reaction of [CuI(6-PhTPA)]+ with O2. , 2006, Dalton transactions.

[41]  H. Fujii,et al.  Spectroscopic characterization of reaction intermediates in a model for copper nitrite reductase. , 2006, Angewandte Chemie.

[42]  N. Arulsamy,et al.  Synthesis of diazeniumdiolates from the reactions of nitric oxide with enolates. , 2006, Journal of Organic Chemistry.

[43]  K. Yamaguchi,et al.  Electroreduction of nitrite on gold electrode modified with Cu-containing nitrite reductase model complex. , 2005, Chemical communications.

[44]  Eric V. Anslyn,et al.  Modern Physical Organic Chemistry , 2005 .

[45]  H. Yokoyama,et al.  CuI and CuII Complexes Containing Nitrite and Tridentate Aromatic Amine Ligand as Models for the Substrate-Binding Type-2 Cu Site of Nitrite Reductase , 2005 .

[46]  Erik Van Lenthe,et al.  Optimized Slater‐type basis sets for the elements 1–118 , 2003, J. Comput. Chem..

[47]  Mark E Meyerhoff,et al.  In vivo biocompatibility and analytical performance of intravascular amperometric oxygen sensors prepared with improved nitric oxide-releasing silicone rubber coating. , 2002, Analytical chemistry.

[48]  F. Matthias Bickelhaupt,et al.  Chemistry with ADF , 2001, J. Comput. Chem..

[49]  E. Monzani,et al.  Binding of nitrite and its reductive activation to nitric oxide at biomimetic copper centers , 2000, JBIC Journal of Biological Inorganic Chemistry.

[50]  Tom Ziegler,et al.  An implementation of the conductor-like screening model of solvation within the Amsterdam density functional package , 1999 .

[51]  C. Ruggiero,et al.  Influences of Ligand Environment on the Spectroscopic Properties and Disproportionation Reactivity of Copper−Nitrosyl Complexes , 1998 .

[52]  W. Zumft Cell biology and molecular basis of denitrification , 1997 .

[53]  B. Averill Dissimilatory Nitrite and Nitric Oxide Reductases. , 1996, Chemical reviews.

[54]  O. Carugo,et al.  Synthesis, Structure, and Reactivity of Model Complexes of Copper Nitrite Reductase. , 1996, Inorganic chemistry.

[55]  E. C. Wilkinson,et al.  Synthetic Modeling of Nitrite Binding and Activation by Reduced Copper Proteins. Characterization of Copper(I)−Nitrite Complexes That Evolve Nitric Oxide , 1996 .

[56]  G. Adachi,et al.  Molecular Structure of Nitro- and Nitrito-Copper Complexes as Reaction Intermediates in Electrochemical Reduction of Nitrite to Dinitrogen Oxide , 1995 .

[57]  W. Tolman,et al.  Synthetic Model of the Substrate Adduct to the Reduced Active Site of Copper Nitrite Reductase , 1994 .

[58]  C. Ruggiero,et al.  Reductive Disproportionation of NO Mediated by Copper Complexes: Modeling N2O Generation by Copper Proteins and Heterogeneous Catalysts , 1994 .

[59]  W. Tolman,et al.  Synthetic Analogs of Nitrite Adducts of Copper Proteins: Characterization and Interconversion of Dicopper(I, I) and -(I, II) Complexes Bridged Only by NO2 - , 1994 .

[60]  G. Adachi,et al.  Molecular Structure of Copper Nitrito Complex as the Reaction Intermediate of Dissimilatory Reduction of NO2 , 1993 .

[61]  A. Becke A New Mixing of Hartree-Fock and Local Density-Functional Theories , 1993 .

[62]  C. Ruggiero,et al.  Synthesis and structural characterization of a mononuclear copper nitrosyl complex , 1992 .

[63]  W. Tolman A model for the substrate adduct of copper nitrite reductase and its conversion to a novel tetrahedral copper(II) triflate complex , 1991 .

[64]  Parr,et al.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. , 1988, Physical review. B, Condensed matter.

[65]  A. Ault General Acid and General Base Catalysis , 2007 .

[66]  A. Krężel,et al.  A formula for correlating pKa values determined in D2O and H2O. , 2004, Journal of inorganic biochemistry.

[67]  P. Smit,et al.  Studies in homogeneous catalysis: Kinetics and mechanism of the copper-catalysed reaction of nitric oxide and diethylamine (I) , 1965 .