Axial Heme Coordination by the Tyr-His Motif in the Extracellular Hemophore HasAp Is Critical for the Release of Heme to the HasR Receptor of Pseudomonas aeruginosa.

Pseudomonas aeruginosa senses extracellular heme via an extra cytoplasmic function σ factor that is activated upon interaction of the hemophore holo-HasAp with the HasR receptor. Herein, we show Y75H holo-HasAp interacts with HasR but is unable to release heme for signaling and uptake. To understand this inhibition, we undertook a spectroscopic characterization of Y75H holo-HasAp by resonance Raman (RR), electron paramagnetic resonance (EPR), and X-ray crystallography. The RR spectra are consistent with a mixed six-coordinate high-spin (6cHS), six-coordinate low-spin (6cLS) heme configuration and an H218O exchangeable FeIII-O stretching frequency with 16O/18O and H/D isotope shifts that support a two-body Fe-OH2 oscillator with (iron-hydroxy)-like character as both hydrogen atoms are engaged in short hydrogen bond interactions with protein side chains. Further support comes from the EPR spectrum of Y75H holo-HasAp that shows a LS rhombic signal with ligand-field splitting values intermediate between those of His-hydroxy and bis-His ferric hemes. The crystal structure of Y75H holo-HasAp confirmed the coordinated solvent molecule hydrogen bonded through H75 and H83. The long-range conformational rearrangement of HasAp upon heme binding can still take place in Y75H holo-HasAp, because the intercalation of a hydroxy ligand between the heme iron and H75 allows the variant to reproduce the heme binding pocket observed in wild-type holo-HasAp. However, in the absence of a covalent linkage to the Y75 loop combined with the malleability provided by the bracketing H75 and H83 hydrogen bonds, either the hydroxy sixth ligand remains bound after complexation of Y75H holo-HasAp with HasR or rearrangement and coordination of H85 prevent heme transfer.

[1]  A. Wilks,et al.  Gallium (III) Salophen as a Dual Inhibitor of Pseudomonas aeruginosa Heme Sensing and Iron Acquisition. , 2020, ACS infectious diseases.

[2]  A. Wilks,et al.  Contributions of the heme coordinating ligands of the Pseudomonas aeruginosa outer membrane receptor HasR to extracellular heme sensing and transport , 2020, The Journal of Biological Chemistry.

[3]  A. Wilks,et al.  Post-transcriptional regulation of the Pseudomonas aeruginosa heme assimilation system (Has) fine-tunes extracellular heme sensing , 2018, The Journal of Biological Chemistry.

[4]  A. Wilks,et al.  Extracellular Heme Uptake and the Challenge of Bacterial Cell Membranes. , 2017, Annual review of biochemistry.

[5]  E. Sineva,et al.  Themes and variations in gene regulation by extracytoplasmic function (ECF) sigma factors. , 2017, Current opinion in microbiology.

[6]  Amanda G. Oglesby-Sherrouse,et al.  Dual-seq transcriptomics reveals the battle for iron during Pseudomonas aeruginosa acute murine pneumonia , 2016, Scientific Reports.

[7]  H. Reyes-caballero,et al.  Metabolite-driven Regulation of Heme Uptake by the Biliverdin IXβ/δ-Selective Heme Oxygenase (HemO) of Pseudomonas aeruginosa* , 2016, The Journal of Biological Chemistry.

[8]  W. Im,et al.  Replacing Arginine 33 for Alanine in the Hemophore HasA from Pseudomonas aeruginosa Causes Closure of the H32 Loop in the Apo-Protein. , 2016, Biochemistry.

[9]  S. Payne,et al.  Vibrio Iron Transport: Evolutionary Adaptation to Life in Multiple Environments , 2015, Microbiology and Molecular Reviews.

[10]  D. Heinrichs,et al.  Recent developments in understanding the iron acquisition strategies of gram positive pathogens. , 2015, FEMS microbiology reviews.

[11]  J. Dawson,et al.  Spectroscopic Determination of Distinct Heme Ligands in Outer-Membrane Receptors PhuR and HasR of Pseudomonas aeruginosa. , 2015, Biochemistry.

[12]  A. Wilks,et al.  Differential Contributions of the Outer Membrane Receptors PhuR and HasR to Heme Acquisition in Pseudomonas aeruginosa* , 2015, The Journal of Biological Chemistry.

[13]  Juan P. Bustamante,et al.  Interplay of the H-bond donor-acceptor role of the distal residues in hydroxyl ligand stabilization of Thermobifida fusca truncated hemoglobin. , 2014, Biochemistry.

[14]  P. Visca,et al.  Cell-surface signaling in Pseudomonas: stress responses, iron transport, and pathogenicity. , 2014, FEMS microbiology reviews.

[15]  Angela T. Nguyen,et al.  Adaptation of Iron Homeostasis Pathways by a Pseudomonas aeruginosa Pyoverdine Mutant in the Cystic Fibrosis Lung , 2014, Journal of bacteriology.

[16]  N. Chim,et al.  Heme uptake in bacterial pathogens. , 2014, Current opinion in chemical biology.

[17]  M. Rivera,et al.  Replacing the Axial Ligand Tyrosine 75 or Its Hydrogen Bond Partner Histidine 83 Minimally Affects Hemin Acquisition by the Hemophore HasAp from Pseudomonas aeruginosa , 2014, Biochemistry.

[18]  D. Newman,et al.  Ferrous Iron Is a Significant Component of Bioavailable Iron in Cystic Fibrosis Airways , 2013, mBio.

[19]  M. Rivera,et al.  The hemophore HasA from Yersinia pestis (HasAyp) coordinates hemin with a single residue, Tyr75, and with minimal conformational change. , 2013, Biochemistry.

[20]  T. Mascher Signaling diversity and evolution of extracytoplasmic function (ECF) σ factors. , 2013, Current opinion in microbiology.

[21]  M. Delepierre,et al.  Role of the Iron Axial Ligands of Heme Carrier HasA in Heme Uptake and Release* , 2012, The Journal of Biological Chemistry.

[22]  Michael E. P. Murphy,et al.  Iron-coordinating tyrosine is a key determinant of NEAT domain heme transfer. , 2011, Journal of molecular biology.

[23]  A. L. Arrieta,et al.  Unique Heme-Iron Coordination by the Hemoglobin Receptor IsdB of Staphylococcus aureus , 2011, Biochemistry.

[24]  M. Rivera,et al.  Kinetic and spectroscopic studies of hemin acquisition in the hemophore HasAp from Pseudomonas aeruginosa. , 2010, Biochemistry.

[25]  W. Im,et al.  Structural, NMR spectroscopic, and computational investigation of hemin loading in the hemophore HasAp from Pseudomonas aeruginosa. , 2010, Journal of the American Chemical Society.

[26]  Randy J. Read,et al.  Acta Crystallographica Section D Biological , 2003 .

[27]  Tomas Ganz,et al.  Iron in innate immunity: starve the invaders. , 2009, Current opinion in immunology.

[28]  K. Diederichs,et al.  Heme uptake across the outer membrane as revealed by crystal structures of the receptor–hemophore complex , 2009, Proceedings of the National Academy of Sciences.

[29]  A. Becker,et al.  Structural characterization of the hemophore HasAp from Pseudomonas aeruginosa: NMR spectroscopy reveals protein-protein interactions between Holo-HasAp and hemoglobin. , 2009, Biochemistry.

[30]  A. Wilks,et al.  The Cytoplasmic Heme-binding Protein (PhuS) from the Heme Uptake System of Pseudomonas aeruginosa Is an Intracellular Heme-trafficking Protein to the δ-Regioselective Heme Oxygenase* , 2006, Journal of Biological Chemistry.

[31]  K. Poole,et al.  FpvIR Control of fpvA Ferric Pyoverdine Receptor Gene Expression in Pseudomonas aeruginosa: Demonstration of an Interaction between FpvI and FpvR and Identification of Mutations in Each Compromising This Interaction , 2005, Journal of bacteriology.

[32]  Zheng Qing Fu,et al.  SGXPro: a parallel workflow engine enabling optimization of program performance and automation of structure determination. , 2005, Acta crystallographica. Section D, Biological crystallography.

[33]  A. Prince,et al.  Pathogen-host interactions in Pseudomonas aeruginosa pneumonia. , 2005, American journal of respiratory and critical care medicine.

[34]  Kevin Cowtan,et al.  research papers Acta Crystallographica Section D Biological , 2005 .

[35]  S. Létoffé,et al.  Haemophore‐mediated signalling in Serratia marcescens: a new mode of regulation for an extra cytoplasmic function (ECF) sigma factor involved in haem acquisition , 2004, Molecular microbiology.

[36]  C. Wandersman,et al.  Haemophore‐mediated signal transduction across the bacterial cell envelope in Serratia marcescens: the inducer and the transported substrate are different molecules , 2003, Molecular microbiology.

[37]  K. Poole,et al.  Pyoverdine-Mediated Regulation of FpvA Synthesis in Pseudomonas aeruginosa: Involvement of a Probable Extracytoplasmic-Function Sigma Factor, FpvI , 2003, Journal of bacteriology.

[38]  C. K. Vanderpool,et al.  Heme-Responsive Transcriptional Activation of Bordetella bhu Genes , 2003, Journal of bacteriology.

[39]  P. Beare,et al.  Siderophore‐mediated cell signalling in Pseudomonas aeruginosa: divergent pathways regulate virulence factor production and siderophore receptor synthesis , 2002, Molecular microbiology.

[40]  A. Wilks,et al.  Homologues of Neisserial Heme Oxygenase in Gram-Negative Bacteria: Degradation of Heme by the Product of thepigA Gene of Pseudomonas aeruginosa , 2001, Journal of bacteriology.

[41]  J. Costerton Cystic fibrosis pathogenesis and the role of biofilms in persistent infection. , 2001, Trends in microbiology.

[42]  B. Howes,et al.  Formation of two types of low-spin heme in horseradish peroxidase isoenzyme A2 at low temperature , 2000, JBIC Journal of Biological Inorganic Chemistry.

[43]  V. de Lorenzo,et al.  Functional Analysis of PvdS, an Iron Starvation Sigma Factor of Pseudomonas aeruginosa , 2000, Journal of bacteriology.

[44]  B. Mcgarvey Survey of ligand field parameters of strong field d5 complexes obtained from the g matrix , 1998 .

[45]  P. Visca,et al.  Iron-regulated transcription of the pvdA gene in Pseudomonas aeruginosa: effect of Fur and PvdS on promoter activity , 1996, Journal of bacteriology.

[46]  H. Cunliffe,et al.  Cloning and characterization of pvdS, a gene required for pyoverdine synthesis in Pseudomonas aeruginosa: PvdS is probably an alternative sigma factor , 1995, Journal of bacteriology.

[47]  D. Heinrichs,et al.  Pyochelin-mediated iron transport in Pseudomonas aeruginosa: involvement of a high-molecular-mass outer membrane protein , 1991, Infection and immunity.

[48]  D. Kraus,et al.  Hemoglobins of the Lucina pectinata/bacteria symbiosis. I. Molecular properties, kinetics and equilibria of reactions with ligands. , 1990, The Journal of biological chemistry.

[49]  E. Margoliash,et al.  Multiple low spin forms of the cytochrome c ferrihemochrome. EPR spectra of various eukaryotic and prokaryotic cytochromes c. , 1977, The Journal of biological chemistry.

[50]  J. Peisach,et al.  Low—Spin Compounds of Heme Proteins , 1971 .

[51]  H. Watari,et al.  Electron spin resonance of cytochrome b2 and of cytochrome b2 core. , 1967, Biochimica et biophysica acta.

[52]  J. Wang,et al.  Porphyrins and Metalloporphyrins , 1964, The Yale Journal of Biology and Medicine.

[53]  P. W. Royt Pyoverdine-mediated iron transport Fate of iron and ligand inPseudomonas aeruginosa , 2005, Biology of Metals.

[54]  J. Helmann The extracytoplasmic function (ECF) sigma factors. , 2002, Advances in microbial physiology.

[55]  M. Vasil,et al.  Genetics and regulation of two distinct haem-uptake systems, phu and has, in Pseudomonas aeruginosa. , 2000, Microbiology.

[56]  D. Maclaren,et al.  Transferrins and heme-compounds as iron sources for pathogenic bacteria. , 1992, Critical reviews in microbiology.