Knot what we thought before: the twisted story of replication.

DNA replication requires the unwinding of the parental duplex, which generates (+) supercoiling ahead of the replication fork. It has been thought that removal of these (+) supercoils was the only method of unlinking the parental strands. Recent evidence implies that supercoils can diffuse across the replication fork, resulting in interwound replicated strands called precatenanes. Topoisomerases can then act both in front of and behind the replication fork. A new study by Sogo et al. [J Mol Biol 1999;286:637-643 (Ref. 1)], using a topological analysis, provides the best evidence that precatenanes exist in negatively supercoiled, partially replicated molecules in vivo.

[1]  T. Kelly,et al.  Structure of Replicating Simian Virus 40 Deoxyribonucleic Acid Molecules , 1971, Journal of virology.

[2]  J. Inselburg,et al.  Electron Microscopic Studies of Replicating and Catenated Colicin Factor E1 DNA Isolated from Minicells , 1972 .

[3]  J. Champoux,et al.  Characterization of the replicative intermediates of polyoma virus. , 1974, Virology.

[4]  R. Williams Use of polylysine for adsorption of nuclei acids and enzymes to electron microscope specimen films. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[5]  J. Champoux,et al.  TOPOISOMERASES AND THE SWIVEL PROBLEM , 1980 .

[6]  H. Martinson,et al.  Structure of nucleosome core particles containing uH2A (A24). , 1981, Nucleic acids research.

[7]  J. Wang,et al.  Bacterial DNA topoisomerase I can relax positively supercoiled DNA containing a single-stranded loop. , 1985, Journal of molecular biology.

[8]  N. Cozzarelli,et al.  Biochemical topology: applications to DNA recombination and replication. , 1986, Science.

[9]  T. Hill,et al.  Termination of DNA replication in Escherichia coli requires a trans-acting factor , 1988, Journal of bacteriology.

[10]  D. Bastia,et al.  The replication terminator protein of E. coli is a DNA sequence-specific contra-helicase , 1989, Cell.

[11]  N. Cozzarelli,et al.  Supercoiled DNA-directed knotting by T4 topoisomerase. , 1991, The Journal of biological chemistry.

[12]  D. Lilley,et al.  DNA replication, 2nd edn , 1992 .

[13]  H. Hiasa,et al.  Topoisomerase III, but not topoisomerase I, can support nascent chain elongation during theta-type DNA replication. , 1994, The Journal of biological chemistry.

[14]  N. Cozzarelli,et al.  Unlinking of DNA by Topoisomerases During DNA Replication , 1995 .

[15]  H. Hiasa,et al.  Two Distinct Modes of Strand Unlinking during θ-Type DNA Replication* , 1996, The Journal of Biological Chemistry.

[16]  J. Alonso,et al.  The ColE1 Unidirectional Origin Acts as a Polar Replication Fork Pausing Site* , 1996, The Journal of Biological Chemistry.

[17]  J. Schvartzman,et al.  DnaB Helicase Is Unable to Dissociate RNA-DNA Hybrids , 1998, The Journal of Biological Chemistry.

[18]  B. Peter,et al.  The Structure of Supercoiled Intermediates in DNA Replication , 1998, Cell.

[19]  B. Peter,et al.  The topological mechanism of phage lambda integrase. , 1999, Journal of molecular biology.

[20]  F. Harmon,et al.  RecQ helicase and topoisomerase III comprise a novel DNA strand passage function: a conserved mechanism for control of DNA recombination. , 1999, Molecular cell.

[21]  A. Stasiak,et al.  Formation of knots in partially replicated DNA molecules. , 1999, Journal of molecular biology.