Variational multiple-tensor fitting of fiber-ambiguous diffusion-weighted magnetic resonance imaging voxels.

Partial volume effects are often experienced in diffusion-weighted MRI of biologic tissue. This is when the signal attenuation reflects a mixture of diffusion processes, originating from different tissue compartments, residing in the same voxel. Decomposing the mixture requires elaborated models that account for multiple compartments, yet the fitting problem for those models is usually ill posed. We suggest a novel approach for stabilizing the fitting problem of the multiple-tensors model by a variational framework that adds biologically oriented assumption of neighborhood alignments. The framework is designed to address fiber ambiguity caused by a number of neuronal fiber compartments residing in the same voxel. The method requires diffusion data acquired by common, clinically feasible MRI sequences, and is able to derive familiar tensor quantities for each compartment. Neighborhood alignment is performed by adding piece-wise smooth regularization constraints to an energy function. Minimization with the gradient descent method produces a set of diffusion-reaction partial differential equations that describe a tensor-preserving flow towards a best approximation of the data while maintaining the constraints. We analyze fiber compartment separation capabilities on a synthetic model of crossing fibers and on brain areas known to have crossing fibers. We compare the results with diffusion tensor imaging analysis and discuss applications for the framework.

[1]  Mariano Rivera,et al.  Basis Tensor Decomposition for Restoring Intra-Voxel Structure and Stochastic Walks for Inferring Brain Connectivity in DT-MRI , 2006, International Journal of Computer Vision.

[2]  Daniel C Alexander,et al.  Multiple‐Fiber Reconstruction Algorithms for Diffusion MRI , 2005, Annals of the New York Academy of Sciences.

[3]  Rachid Deriche,et al.  Orthonormal Vector Sets Regularization with PDE's and Applications , 2002, International Journal of Computer Vision.

[4]  Sinisa Pajevic,et al.  Color schemes to represent the orientation of anisotropic tissues from diffusion tensor data: Application to white matter fiber tract mapping in the human brain , 1999, Magnetic resonance in medicine.

[5]  Rachid Deriche,et al.  Statistics on the Manifold of Multivariate Normal Distributions: Theory and Application to Diffusion Tensor MRI Processing , 2006, Journal of Mathematical Imaging and Vision.

[6]  P. Basser,et al.  MR diffusion tensor spectroscopy and imaging. , 1994, Biophysical journal.

[7]  P. Basser,et al.  Toward a quantitative assessment of diffusion anisotropy , 1996, Magnetic resonance in medicine.

[8]  P. Basser,et al.  Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. , 1996, Journal of magnetic resonance. Series B.

[9]  P. Basser,et al.  New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter , 2004, Magnetic resonance in medicine.

[10]  S. Arridge,et al.  Detection and modeling of non‐Gaussian apparent diffusion coefficient profiles in human brain data , 2002, Magnetic resonance in medicine.

[11]  Gareth J. Barker,et al.  Optimal imaging parameters for fiber-orientation estimation in diffusion MRI , 2005, NeuroImage.

[12]  J. E. Tanner,et al.  Spin diffusion measurements : spin echoes in the presence of a time-dependent field gradient , 1965 .

[13]  J. Schnabel,et al.  Nonlinear smoothing for reduction of systematic and random errors in diffusion tensor imaging , 2000, Journal of magnetic resonance imaging : JMRI.

[14]  Rachid Deriche,et al.  Variational frameworks for DT-MRI estimation, regularization and visualization , 2003, Proceedings Ninth IEEE International Conference on Computer Vision.

[15]  Simon R. Arridge,et al.  A Regularization Scheme for Diffusion Tensor Magnetic Resonance Images , 2001, IPMI.

[16]  Nathan Intrator,et al.  Neuronal Fiber Delineation in Area of Edema from Diffusion Weighted MRI , 2005, NIPS.

[17]  Ofer Pasternak,et al.  Variational Regularization of Multiple Diffusion Tensor Fields , 2006, Visualization and Processing of Tensor Fields.

[18]  D. Parker,et al.  Analysis of partial volume effects in diffusion‐tensor MRI , 2001, Magnetic resonance in medicine.

[19]  Pierre Kornprobst,et al.  Mathematical problems in image processing - partial differential equations and the calculus of variations , 2010, Applied mathematical sciences.

[20]  J. Craggs Applied Mathematical Sciences , 1973 .

[21]  P. Basser,et al.  Diffusion tensor MR imaging of the human brain. , 1996, Radiology.

[22]  N. Makris,et al.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity , 2002, Magnetic resonance in medicine.

[23]  P. Grenier,et al.  MR imaging of intravoxel incoherent motions: application to diffusion and perfusion in neurologic disorders. , 1986, Radiology.

[24]  Xavier Pennec,et al.  A Riemannian Framework for Tensor Computing , 2005, International Journal of Computer Vision.

[25]  Joachim Weickert,et al.  Coherence-Enhancing Diffusion Filtering , 1999, International Journal of Computer Vision.

[26]  V. Wedeen,et al.  Diffusion MRI of Complex Neural Architecture , 2003, Neuron.

[27]  T. Mareci,et al.  Generalized diffusion tensor imaging and analytical relationships between diffusion tensor imaging and high angular resolution diffusion imaging , 2003, Magnetic resonance in medicine.

[28]  B. Vemuri,et al.  Fiber tract mapping from diffusion tensor MRI , 2001, Proceedings IEEE Workshop on Variational and Level Set Methods in Computer Vision.

[29]  Carl-Fredrik Westin,et al.  Geometrically constrained two-tensor model for crossing tracts in DWI. , 2006, Magnetic resonance imaging.

[30]  Alan Connelly,et al.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution , 2004, NeuroImage.

[31]  Zhizhou Wang,et al.  A constrained variational principle for direct estimation and smoothing of the diffusion tensor field from complex DWI , 2004, IEEE Transactions on Medical Imaging.

[32]  S. Wakana,et al.  MRI Atlas of Human White Matter , 2005 .

[33]  Kalvis M. Jansons,et al.  Persistent angular structure: new insights from diffusion magnetic resonance imaging data , 2003 .

[34]  P. V. van Zijl,et al.  Three‐dimensional tracking of axonal projections in the brain by magnetic resonance imaging , 1999, Annals of neurology.

[35]  H. Pfeifer Principles of Nuclear Magnetic Resonance Microscopy , 1992 .

[36]  Nir A. Sochen,et al.  Fast Invariant Riemannian DT-MRI Regularization , 2007, 2007 IEEE 11th International Conference on Computer Vision.

[37]  P. Basser,et al.  In vivo fiber tractography using DT‐MRI data , 2000, Magnetic resonance in medicine.

[38]  Daniel C. Alexander,et al.  Persistent Angular Structure: New Insights from Diffusion MRI Data. Dummy Version , 2003, IPMI.